Wall clock time and date at job start Tue Mar 31 2020 21:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 116.99769 * 2 1 4 4 O 1.20824 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47073 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46788 * 179.97438 * 6 5 3 8 8 C 1.36938 * 119.99888 * 269.99093 * 7 6 5 9 9 H 1.08000 * 120.00080 * 326.07296 * 8 7 6 10 10 C 1.38813 * 119.99628 * 146.06859 * 8 7 6 11 11 N 1.31623 * 119.99797 * 337.81773 * 10 8 7 12 12 Si 1.86800 * 120.00013 * 157.82346 * 10 8 7 13 13 H 1.48499 * 109.47345 * 89.99589 * 12 10 8 14 14 H 1.48496 * 109.46961 * 209.99884 * 12 10 8 15 15 H 1.48503 * 109.47008 * 329.99547 * 12 10 8 16 16 C 1.46497 * 119.99813 * 90.00211 * 7 6 5 17 17 C 1.50702 * 109.47583 * 85.74173 * 16 7 6 18 18 N 1.28805 * 124.75899 * 89.99717 * 17 16 7 19 19 C 1.32507 * 117.11989 * 180.02562 * 18 17 16 20 20 C 1.48413 * 122.95440 * 179.97438 * 19 18 17 21 21 N 1.34065 * 126.67689 * 0.02562 * 20 19 18 22 22 N 1.28982 * 107.26458 * 180.02562 * 21 20 19 23 23 N 1.28736 * 108.95039 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.33362 * 179.97438 * 23 22 21 25 25 N 1.28870 * 109.32253 * 359.73128 * 23 22 21 26 26 C 1.34794 * 114.08771 * 359.97438 * 19 18 17 27 27 S 1.70913 * 124.75768 * 270.28694 * 17 16 7 28 28 H 1.09005 * 109.47552 * 300.00650 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00400 * 1 2 3 30 30 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47748 * 59.99601 * 5 3 2 32 32 H 1.09002 * 109.47269 * 299.99374 * 5 3 2 33 33 H 1.08994 * 109.47310 * 60.00043 * 6 5 3 34 34 H 1.08993 * 109.47058 * 299.99414 * 6 5 3 35 35 H 0.96998 * 119.99477 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.47396 * 325.73480 * 16 7 6 37 37 H 1.09005 * 109.46919 * 205.73853 * 16 7 6 38 38 H 1.07998 * 126.06018 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1458 2.8556 1.1875 9 1 5.7162 3.3567 2.0423 10 6 7.3899 2.2489 1.2914 11 7 7.7291 1.2947 0.4506 12 14 8.5828 2.7865 2.6246 13 1 8.3597 1.9721 3.8462 14 1 9.9763 2.5939 2.1490 15 1 8.3607 4.2209 2.9385 16 6 6.1956 2.8561 -1.2671 17 6 6.2815 4.2790 -1.7560 18 7 7.2315 5.0990 -1.4659 19 6 7.1550 6.3181 -1.9794 20 6 8.1769 7.3651 -1.7296 21 7 9.2824 7.2425 -0.9811 22 7 9.8987 8.3749 -1.0205 23 7 9.2276 9.1908 -1.7562 24 1 9.4765 10.1088 -1.9467 25 7 8.1762 8.5952 -2.2038 26 6 6.0674 6.5238 -2.7488 27 16 5.1285 5.0331 -2.7674 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.9564 0.7806 -0.8890 32 1 3.9556 0.7810 0.8909 33 1 3.6099 3.2368 0.8893 34 1 3.6108 3.2356 -0.8907 35 1 8.5983 0.8705 0.5235 36 1 5.6734 2.2488 -2.0064 37 1 7.2008 2.4619 -1.1178 38 1 5.8140 7.4412 -3.2592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591264999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:40 Heat of formation + Delta-G solvation = 111.915210 kcal Electronic energy + Delta-G solvation = -26164.648534 eV Core-core repulsion = 22173.689851 eV Total energy + Delta-G solvation = -3990.958683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.33715 -40.08521 -39.20714 -36.55731 -35.83904 -34.17400 -33.28870 -32.14653 -30.90735 -29.45217 -27.55759 -26.82819 -25.34114 -24.41884 -24.17264 -22.45677 -21.14277 -20.09505 -19.43580 -19.01986 -17.54161 -17.24255 -17.05020 -16.58188 -16.23251 -16.12641 -15.57070 -14.85607 -14.40674 -14.00232 -13.89804 -13.84385 -13.54379 -13.14934 -12.92299 -12.74233 -12.25435 -12.18159 -12.06853 -11.50049 -11.28487 -11.27603 -11.22387 -11.00939 -10.85503 -10.75667 -10.60915 -10.55266 -10.31088 -10.25164 -10.09698 -9.95917 -8.99909 -8.93190 -8.61307 -8.29006 -6.92933 -5.97592 -3.48452 0.82683 1.25354 1.75897 2.12003 2.17423 2.31685 2.59403 3.06075 3.40107 3.51015 3.55803 3.58153 3.74308 4.38477 4.45726 4.99970 5.13431 5.18917 5.24634 5.28348 5.42941 5.46998 5.53652 5.60514 5.73255 5.75442 5.77525 5.93703 6.25074 6.35540 6.41269 6.53832 6.56908 6.66676 6.85990 7.35458 7.72146 8.09966 8.19716 8.29321 8.41661 8.95689 9.60271 10.09868 11.05789 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003705 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.911684 B = 7554.955008 C = 9460.831428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.518 6.518 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.559 5.559 8 C -0.265 4.265 9 H 0.067 0.933 10 C 0.028 3.972 11 N -0.879 5.879 12 Si 0.903 3.097 13 H -0.287 1.287 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.200 3.800 17 C 0.091 3.909 18 N -0.443 5.443 19 C 0.142 3.858 20 C 0.260 3.740 21 N -0.237 5.237 22 N -0.057 5.057 23 N -0.234 5.234 24 H 0.473 0.527 25 N -0.295 5.295 26 C -0.242 4.242 27 S 0.097 5.903 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.138 0.862 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 6.542 -7.738 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.406 6.406 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.276 5.276 8 C -0.394 4.394 9 H 0.084 0.916 10 C -0.174 4.174 11 N -0.520 5.520 12 Si 0.732 3.268 13 H -0.214 1.214 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.069 3.931 17 C -0.192 4.192 18 N -0.156 5.156 19 C 0.007 3.993 20 C -0.023 4.023 21 N -0.110 5.110 22 N -0.053 5.053 23 N -0.079 5.079 24 H 0.327 0.673 25 N -0.149 5.149 26 C -0.386 4.386 27 S 0.353 5.647 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.955 6.405 -7.577 11.571 hybrid contribution 0.786 1.581 0.514 1.839 sum -5.169 7.986 -7.063 11.848 Atomic orbital electron populations 1.23159 0.77618 1.03044 1.02154 1.86591 1.22574 1.34617 1.84383 1.24591 0.92871 0.80755 0.71186 1.90614 1.67576 1.36381 1.46017 1.22352 0.84227 1.04266 1.06172 1.20844 0.84814 0.90739 1.00604 1.43835 0.99759 1.81936 1.02085 1.19036 1.01177 1.29648 0.89584 0.91581 1.25045 0.99681 0.94610 0.98065 1.69863 1.21751 1.21703 1.38700 0.86301 0.80664 0.79076 0.80772 1.21432 1.21046 1.20022 1.20073 1.03760 0.82760 0.86469 1.29567 0.90275 1.04033 0.95373 1.66047 1.26916 1.00461 1.22213 1.16769 0.92415 0.90110 1.00054 1.22574 0.94386 0.89776 0.95562 1.76354 1.05053 1.12358 1.17279 1.78989 1.19691 0.95868 1.10737 1.47696 1.13257 1.15802 1.31174 0.67334 1.74852 1.08773 1.08205 1.23022 1.26771 0.99218 1.03949 1.08704 1.83984 1.29158 1.03721 1.47858 0.92268 0.92286 0.88678 0.88302 0.87054 0.92263 0.93469 0.92911 0.92616 0.84493 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.41 10.56 -39.25 -0.41 -5.83 16 3 C 0.46 7.71 7.96 36.01 0.29 7.99 16 4 O -0.52 -9.62 15.73 -18.75 -0.29 -9.92 16 5 C -0.13 -2.26 6.14 -27.88 -0.17 -2.43 16 6 C 0.16 3.06 4.98 -4.04 -0.02 3.04 16 7 N -0.56 -12.58 2.44 -174.61 -0.43 -13.01 16 8 C -0.27 -6.77 9.49 -15.06 -0.14 -6.92 16 9 H 0.07 1.72 7.92 -52.49 -0.42 1.31 16 10 C 0.03 0.73 4.93 -17.43 -0.09 0.64 16 11 N -0.88 -23.24 11.32 55.49 0.63 -22.61 16 12 Si 0.90 21.81 29.61 -169.99 -5.03 16.78 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.20 4.30 5.82 -5.19 -0.03 4.27 16 17 C 0.09 1.83 6.95 -13.55 -0.09 1.74 16 18 N -0.44 -9.70 10.55 -8.42 -0.09 -9.79 16 19 C 0.14 2.71 6.72 -84.61 -0.57 2.14 16 20 C 0.26 4.67 8.15 -156.29 -1.27 3.40 16 21 N -0.24 -4.58 12.54 32.15 0.40 -4.17 16 22 N -0.06 -0.87 13.47 60.35 0.81 -0.06 16 23 N -0.23 -2.64 7.90 60.35 0.48 -2.17 16 24 H 0.47 2.61 8.96 -340.36 -3.05 -0.44 16 25 N -0.30 -4.19 12.30 32.17 0.40 -3.80 16 26 C -0.24 -3.83 11.12 29.51 0.33 -3.50 16 27 S 0.10 1.54 23.16 -107.50 -2.49 -0.95 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 33 H 0.06 1.21 8.00 -51.93 -0.42 0.80 16 34 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 36 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.14 3.41 5.32 -51.93 -0.28 3.13 16 38 H 0.18 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.04 357.10 -8.02 -40.06 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.67 Total: -1.74 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -0.71 Total: 11.82 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 2.20 Total: -55.60 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.71 Total: -15.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.49 Total: -0.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.04 -8.02 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591264999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.974 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds