Wall clock time and date at job start Tue Mar 31 2020 21:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 116.99769 * 2 1 4 4 O 1.20824 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47073 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46788 * 179.97438 * 6 5 3 8 8 C 1.36938 * 119.99888 * 269.99093 * 7 6 5 9 9 H 1.08000 * 120.00080 * 326.07296 * 8 7 6 10 10 C 1.38813 * 119.99628 * 146.06859 * 8 7 6 11 11 N 1.31623 * 119.99797 * 337.81773 * 10 8 7 12 12 Si 1.86800 * 120.00013 * 157.82346 * 10 8 7 13 13 H 1.48499 * 109.47345 * 89.99589 * 12 10 8 14 14 H 1.48496 * 109.46961 * 209.99884 * 12 10 8 15 15 H 1.48503 * 109.47008 * 329.99547 * 12 10 8 16 16 C 1.46497 * 119.99813 * 90.00211 * 7 6 5 17 17 C 1.50702 * 109.47583 * 85.74173 * 16 7 6 18 18 N 1.28805 * 124.75899 * 89.99717 * 17 16 7 19 19 C 1.32507 * 117.11989 * 180.02562 * 18 17 16 20 20 C 1.48413 * 122.95440 * 179.97438 * 19 18 17 21 21 N 1.34065 * 126.67689 * 0.02562 * 20 19 18 22 22 N 1.28982 * 107.26458 * 180.02562 * 21 20 19 23 23 N 1.28736 * 108.95039 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.33362 * 179.97438 * 23 22 21 25 25 N 1.28870 * 109.32253 * 359.73128 * 23 22 21 26 26 C 1.34794 * 114.08771 * 359.97438 * 19 18 17 27 27 S 1.70913 * 124.75768 * 270.28694 * 17 16 7 28 28 H 1.09005 * 109.47552 * 300.00650 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00400 * 1 2 3 30 30 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47748 * 59.99601 * 5 3 2 32 32 H 1.09002 * 109.47269 * 299.99374 * 5 3 2 33 33 H 1.08994 * 109.47310 * 60.00043 * 6 5 3 34 34 H 1.08993 * 109.47058 * 299.99414 * 6 5 3 35 35 H 0.96998 * 119.99477 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.47396 * 325.73480 * 16 7 6 37 37 H 1.09005 * 109.46919 * 205.73853 * 16 7 6 38 38 H 1.07998 * 126.06018 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1458 2.8556 1.1875 9 1 5.7162 3.3567 2.0423 10 6 7.3899 2.2489 1.2914 11 7 7.7291 1.2947 0.4506 12 14 8.5828 2.7865 2.6246 13 1 8.3597 1.9721 3.8462 14 1 9.9763 2.5939 2.1490 15 1 8.3607 4.2209 2.9385 16 6 6.1956 2.8561 -1.2671 17 6 6.2815 4.2790 -1.7560 18 7 7.2315 5.0990 -1.4659 19 6 7.1550 6.3181 -1.9794 20 6 8.1769 7.3651 -1.7296 21 7 9.2824 7.2425 -0.9811 22 7 9.8987 8.3749 -1.0205 23 7 9.2276 9.1908 -1.7562 24 1 9.4765 10.1088 -1.9467 25 7 8.1762 8.5952 -2.2038 26 6 6.0674 6.5238 -2.7488 27 16 5.1285 5.0331 -2.7674 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.9564 0.7806 -0.8890 32 1 3.9556 0.7810 0.8909 33 1 3.6099 3.2368 0.8893 34 1 3.6108 3.2356 -0.8907 35 1 8.5983 0.8705 0.5235 36 1 5.6734 2.2488 -2.0064 37 1 7.2008 2.4619 -1.1178 38 1 5.8140 7.4412 -3.2592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591264999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:39 Heat of formation + Delta-G solvation = 89.670337 kcal Electronic energy + Delta-G solvation = -26165.613144 eV Core-core repulsion = 22173.689851 eV Total energy + Delta-G solvation = -3991.923293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.52342 -41.37201 -40.64934 -38.04382 -37.27719 -35.39143 -34.54351 -33.92169 -32.40926 -30.92853 -28.72801 -28.33415 -26.69443 -25.98747 -25.39853 -23.91577 -22.61954 -21.46471 -20.75453 -20.36126 -19.11587 -18.54052 -18.23296 -18.12296 -17.49486 -17.38195 -16.91491 -16.68504 -15.93854 -15.61090 -15.35248 -15.13843 -14.92012 -14.59965 -14.39360 -14.08233 -13.63182 -13.45504 -13.31332 -13.12798 -12.77427 -12.70735 -12.59002 -12.48222 -12.40777 -12.24308 -12.15324 -12.05092 -11.94756 -11.76279 -11.63425 -11.43649 -10.55946 -10.44813 -10.29979 -9.61771 -8.75255 -7.91453 -5.43977 -0.44915 0.04157 0.44648 0.72931 0.78272 1.27108 1.36300 1.43927 1.52624 1.59073 1.88196 2.14884 2.49541 2.52933 3.12720 3.28122 3.61982 3.71831 4.08181 4.15766 4.25893 4.31879 4.35458 4.38798 4.40238 4.43996 4.48263 4.74331 4.77533 4.80730 5.06319 5.07423 5.24888 5.47924 5.59017 5.60239 5.70999 6.40318 6.82974 6.89778 7.08632 7.11443 7.75066 8.22589 9.08571 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003705 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.911684 B = 7554.955008 C = 9460.831428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.121 4.121 6 C 0.162 3.838 7 N -0.571 5.571 8 C -0.265 4.265 9 H 0.052 0.948 10 C -0.006 4.006 11 N -0.896 5.896 12 Si 0.939 3.061 13 H -0.277 1.277 14 H -0.293 1.293 15 H -0.291 1.291 16 C 0.205 3.795 17 C 0.052 3.948 18 N -0.483 5.483 19 C 0.110 3.890 20 C 0.241 3.759 21 N -0.291 5.291 22 N -0.060 5.060 23 N -0.193 5.193 24 H 0.497 0.503 25 N -0.276 5.276 26 C -0.218 4.218 27 S 0.181 5.819 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 7.908 -9.523 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.161 4.161 6 C 0.036 3.964 7 N -0.290 5.290 8 C -0.395 4.395 9 H 0.070 0.930 10 C -0.205 4.205 11 N -0.538 5.538 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.217 1.217 16 C 0.075 3.925 17 C -0.230 4.230 18 N -0.198 5.198 19 C -0.025 4.025 20 C -0.042 4.042 21 N -0.163 5.163 22 N -0.055 5.055 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.130 5.130 26 C -0.362 4.362 27 S 0.437 5.563 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.830 7.772 -9.358 14.467 hybrid contribution 1.246 1.354 0.900 2.048 sum -6.585 9.126 -8.458 14.077 Atomic orbital electron populations 1.23529 0.75124 1.05523 1.02469 1.86552 1.24932 1.33220 1.83784 1.24179 0.92367 0.81027 0.70723 1.90606 1.67918 1.37150 1.47167 1.22064 0.85318 1.02640 1.06064 1.20770 0.83176 0.92040 1.00443 1.43851 1.00703 1.82923 1.01559 1.19016 1.01409 1.28633 0.90489 0.93014 1.25372 1.00624 0.95243 0.99297 1.69937 1.21589 1.22652 1.39672 0.85739 0.79352 0.77830 0.80170 1.20371 1.21925 1.21678 1.19786 1.02011 0.84169 0.86553 1.28983 0.92377 1.03707 0.97936 1.65981 1.28540 1.01991 1.23282 1.16963 0.94136 0.89797 1.01638 1.22595 0.94424 0.90743 0.96456 1.76325 1.06470 1.14279 1.19275 1.78902 1.19661 0.95552 1.11351 1.47768 1.11665 1.16387 1.28695 0.64280 1.74797 1.09103 1.06786 1.22312 1.27272 0.97525 1.05080 1.06297 1.83561 1.25871 1.02170 1.44740 0.92245 0.91735 0.85196 0.87291 0.88375 0.93743 0.92168 0.93457 0.90491 0.88167 0.77108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.26 10.56 -51.39 -0.54 -10.80 16 3 C 0.47 15.20 7.96 71.24 0.57 15.77 16 4 O -0.54 -19.33 15.73 21.97 0.35 -18.98 16 5 C -0.12 -4.15 6.14 29.85 0.18 -3.97 16 6 C 0.16 6.29 4.98 86.38 0.43 6.72 16 7 N -0.57 -26.18 2.44 -706.34 -1.72 -27.90 16 8 C -0.27 -14.00 9.49 84.03 0.80 -13.20 16 9 H 0.05 2.82 7.92 -2.91 -0.02 2.79 16 10 C -0.01 -0.31 4.93 84.86 0.42 0.11 16 11 N -0.90 -49.03 11.32 21.65 0.25 -48.79 16 12 Si 0.94 46.40 29.61 68.60 2.03 48.43 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 16 C 0.21 8.92 5.82 85.63 0.50 9.42 16 17 C 0.05 2.09 6.95 88.55 0.62 2.70 16 18 N -0.48 -21.40 10.55 -180.54 -1.90 -23.30 16 19 C 0.11 4.06 6.72 40.96 0.28 4.34 16 20 C 0.24 8.46 8.15 137.35 1.12 9.58 16 21 N -0.29 -11.31 12.54 -52.20 -0.65 -11.96 16 22 N -0.06 -1.76 13.47 37.02 0.50 -1.26 16 23 N -0.19 -3.92 7.90 37.02 0.29 -3.63 16 24 H 0.50 3.94 8.96 -347.53 -3.12 0.82 16 25 N -0.28 -7.18 12.30 -52.14 -0.64 -7.82 16 26 C -0.22 -6.24 11.12 67.03 0.75 -5.50 16 27 S 0.18 5.27 23.16 -56.49 -1.31 3.96 16 28 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 29 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.04 1.84 8.00 -2.39 -0.02 1.82 16 34 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 37 H 0.10 5.18 5.32 -2.38 -0.01 5.17 16 38 H 0.21 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -72.41 357.10 1.51 -70.90 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -1.98 Total: 3.48 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 6.85 Total: 27.69 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -3.89 Total: -124.67 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.20 Total: -29.79 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.31 Total: 3.96 kcal Total: -72.41 1.51 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591264999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.569 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds