Wall clock time and date at job start Tue Mar 31 2020 20:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99871 * 3 2 1 5 5 H 1.48498 * 109.47048 * 29.99870 * 3 2 1 6 6 H 1.48499 * 109.46926 * 149.99832 * 3 2 1 7 7 C 1.37875 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46940 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.39458 * 120.00417 * 179.97438 * 11 10 9 13 13 C 1.38796 * 120.13341 * 0.02562 * 12 11 10 14 14 C 1.38123 * 120.03746 * 179.71571 * 13 12 11 15 15 C 1.38416 * 120.31797 * 0.25888 * 14 13 12 16 16 C 1.38018 * 120.27456 * 359.97394 * 15 14 13 17 17 S 1.76203 * 120.02109 * 180.02562 * 16 15 14 18 18 N 1.65596 * 107.21891 * 114.99995 * 17 16 15 19 19 O 1.42100 * 106.39961 * 228.54251 * 17 16 15 20 20 O 1.42104 * 106.40183 * 1.45913 * 17 16 15 21 21 C 1.39242 * 119.95769 * 0.02562 * 16 15 14 22 22 C 1.48368 * 120.16176 * 180.02562 * 21 16 15 23 23 N 1.34074 * 126.67490 * 0.02562 * 22 21 16 24 24 N 1.28982 * 107.26367 * 179.97438 * 23 22 21 25 25 N 1.28721 * 108.95684 * 359.97438 * 24 23 22 26 26 H 0.97005 * 125.34127 * 180.02562 * 25 24 23 27 27 N 1.28875 * 109.32669 * 359.75513 * 25 24 23 28 28 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47496 * 59.99325 * 9 7 2 30 30 H 1.08998 * 109.46755 * 299.99022 * 9 7 2 31 31 H 1.09004 * 109.47187 * 59.99797 * 10 9 7 32 32 H 1.08995 * 109.47424 * 299.99712 * 10 9 7 33 33 H 0.97000 * 119.99284 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.98527 * 359.97438 * 13 12 11 35 35 H 1.07993 * 119.84256 * 180.27496 * 14 13 12 36 36 H 1.07996 * 119.86065 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99666 * 359.97438 * 18 17 16 38 38 H 0.96998 * 120.00143 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.2101 -6.1386 0.0007 13 6 3.5981 -6.1418 0.0003 14 6 4.2867 -7.3392 0.0058 15 6 3.5992 -8.5405 0.0064 16 6 2.2191 -8.5525 0.0020 17 16 1.3508 -10.0857 0.0035 18 7 0.5230 -10.1789 1.4347 19 8 0.3710 -9.9929 -1.0215 20 8 2.3387 -11.1063 0.0442 21 6 1.5134 -7.3522 -0.0035 22 6 0.0297 -7.3598 -0.0077 23 7 -0.7656 -8.4391 -0.0062 24 7 -1.9842 -8.0167 -0.0105 25 7 -1.9806 -6.7295 -0.0140 26 1 -2.7703 -6.1661 -0.0172 27 7 -0.7633 -6.3064 -0.0068 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 2.8720 -3.6043 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 0.5429 -4.9307 0.0011 34 1 4.1400 -5.2076 -0.0002 35 1 5.3666 -7.3380 0.0099 36 1 4.1451 -9.4724 0.0103 37 1 0.5841 -9.4557 2.0783 38 1 -0.0230 -10.9566 1.6295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:53 Heat of formation + Delta-G solvation = 102.275978 kcal Electronic energy + Delta-G solvation = -27127.804841 eV Core-core repulsion = 23136.428170 eV Total energy + Delta-G solvation = -3991.376671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.44867 -39.64642 -36.99092 -35.97798 -35.56515 -34.42715 -33.73942 -33.12674 -32.94732 -30.88727 -30.69717 -28.21952 -25.25258 -24.67651 -24.30623 -22.68598 -21.59118 -20.88728 -19.35600 -19.20982 -18.25919 -17.25761 -17.12443 -16.80514 -16.51921 -16.08611 -15.74250 -15.39852 -14.90595 -14.54778 -14.44303 -14.29768 -14.10898 -13.52038 -13.19329 -12.54419 -12.38725 -12.20856 -12.00377 -11.93259 -11.79185 -11.77459 -11.38972 -11.30158 -11.24717 -11.01458 -10.80181 -10.72865 -10.65511 -10.61612 -10.20670 -9.85104 -9.74217 -9.41831 -9.13121 -8.54677 -7.28134 -6.20164 -4.24154 0.33618 0.64034 1.15301 1.36947 2.21368 2.32652 3.20709 3.22302 3.27554 3.29845 3.54138 3.62321 3.72433 3.83848 4.10392 4.32374 4.67641 5.04667 5.13554 5.17080 5.18133 5.32163 5.39849 5.52184 5.72541 5.97144 5.99229 6.07603 6.08418 6.14157 6.31183 6.39024 6.53598 6.62698 7.10356 7.27466 7.48210 7.54033 7.78585 7.98393 8.13867 8.25352 8.81392 9.41256 10.91337 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003172 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.605563 B = 8826.433941 C =10148.496181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.015 3.985 10 C 0.115 3.885 11 N -0.719 5.719 12 C 0.249 3.751 13 C -0.148 4.148 14 C -0.070 4.070 15 C -0.091 4.091 16 C -0.592 4.592 17 S 2.710 3.290 18 N -1.237 6.237 19 O -0.936 6.936 20 O -0.979 6.979 21 C -0.032 4.032 22 C 0.198 3.802 23 N -0.239 5.239 24 N -0.040 5.040 25 N -0.226 5.226 26 H 0.476 0.524 27 N -0.297 5.297 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.413 0.587 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.411 0.589 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -17.514 3.375 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.022 4.022 10 C -0.008 4.008 11 N -0.348 5.348 12 C 0.134 3.866 13 C -0.171 4.171 14 C -0.090 4.090 15 C -0.113 4.113 16 C -0.680 4.680 17 S 2.797 3.203 18 N -0.910 5.910 19 O -0.924 6.924 20 O -0.968 6.968 21 C -0.043 4.043 22 C -0.081 4.081 23 N -0.114 5.114 24 N -0.036 5.036 25 N -0.072 5.072 26 H 0.331 0.669 27 N -0.149 5.149 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.237 0.763 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.360 -18.052 2.508 18.229 hybrid contribution -0.063 2.460 0.493 2.510 sum 0.297 -15.592 3.001 15.881 Atomic orbital electron populations 1.69957 1.06141 1.26970 1.49998 1.25002 0.94894 0.99464 0.94858 0.86507 0.79799 0.82964 0.78246 1.20518 1.21124 1.19709 1.21009 0.93126 0.90315 1.51864 0.92244 1.19256 0.94170 0.90794 0.98001 1.21897 0.96684 0.82232 0.99968 1.46005 1.10558 1.02732 1.75496 1.17931 0.91801 0.85745 0.91104 1.21050 0.91700 0.99685 1.04648 1.21189 1.00246 0.91551 0.96057 1.20623 0.91197 0.99510 1.00018 1.30312 1.05848 1.17348 1.14535 1.01371 0.73134 0.72568 0.73265 1.52765 1.67578 1.31804 1.38873 1.93645 1.58302 1.85061 1.55344 1.93567 1.61436 1.55260 1.86528 1.15960 0.83702 0.92187 1.12446 1.23760 0.95963 0.85476 1.02911 1.76436 0.94875 1.23417 1.16652 1.78858 1.16748 0.93638 1.14366 1.47701 1.07442 1.05784 1.46259 0.66923 1.74339 0.91162 1.26623 1.22727 0.92769 0.95944 0.95928 0.92648 0.92678 0.74349 0.84186 0.84678 0.83714 0.76332 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.76 9.11 -34.44 -0.31 -14.08 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.36 5.09 -27.88 -0.14 0.22 16 10 C 0.11 2.17 4.85 -4.04 -0.02 2.15 16 11 N -0.72 -12.33 5.66 -58.44 -0.33 -12.66 16 12 C 0.25 3.83 6.66 -83.55 -0.56 3.27 16 13 C -0.15 -1.93 9.30 -39.42 -0.37 -2.30 16 14 C -0.07 -0.76 10.03 -39.56 -0.40 -1.16 16 15 C -0.09 -1.06 9.54 -39.60 -0.38 -1.44 16 16 C -0.59 -7.78 5.90 -39.29 -0.23 -8.01 16 17 S 2.71 34.25 5.47 -107.50 -0.59 33.66 16 18 N -1.24 -11.34 8.00 60.35 0.48 -10.86 16 19 O -0.94 -14.86 14.59 -57.17 -0.83 -15.69 16 20 O -0.98 -14.03 16.96 -57.17 -0.97 -15.00 16 21 C -0.03 -0.48 5.89 -104.72 -0.62 -1.09 16 22 C 0.20 2.98 7.63 -156.29 -1.19 1.79 16 23 N -0.24 -3.45 6.39 32.14 0.21 -3.25 16 24 N -0.04 -0.52 13.47 60.35 0.81 0.29 16 25 N -0.23 -2.55 7.90 60.35 0.48 -2.07 16 26 H 0.48 3.25 8.96 -340.36 -3.05 0.20 16 27 N -0.30 -4.27 9.33 32.16 0.30 -3.97 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.41 7.20 5.06 -40.82 -0.21 7.00 16 34 H 0.14 1.70 6.73 -52.49 -0.35 1.35 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.15 1.44 7.32 -52.49 -0.38 1.05 16 37 H 0.41 3.24 8.92 -34.46 -0.31 2.93 16 38 H 0.42 2.96 8.96 -34.47 -0.31 2.65 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -35.09 333.60 -10.26 -45.35 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.25 Total: 7.39 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -4.31 Total: -19.13 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 2.68 Total: -57.07 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.80 Total: -30.69 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 34.25 SS G_CDS: -0.59 Total: 33.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.09 -10.26 -45.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.626 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds