Wall clock time and date at job start Tue Mar 31 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99871 * 3 2 1 5 5 H 1.48498 * 109.47048 * 29.99870 * 3 2 1 6 6 H 1.48499 * 109.46926 * 149.99832 * 3 2 1 7 7 C 1.37875 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46940 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.39458 * 120.00417 * 179.97438 * 11 10 9 13 13 C 1.38796 * 120.13341 * 0.02562 * 12 11 10 14 14 C 1.38123 * 120.03746 * 179.71571 * 13 12 11 15 15 C 1.38416 * 120.31797 * 0.25888 * 14 13 12 16 16 C 1.38018 * 120.27456 * 359.97394 * 15 14 13 17 17 S 1.76203 * 120.02109 * 180.02562 * 16 15 14 18 18 N 1.65596 * 107.21891 * 114.99995 * 17 16 15 19 19 O 1.42100 * 106.39961 * 228.54251 * 17 16 15 20 20 O 1.42104 * 106.40183 * 1.45913 * 17 16 15 21 21 C 1.39242 * 119.95769 * 0.02562 * 16 15 14 22 22 C 1.48368 * 120.16176 * 180.02562 * 21 16 15 23 23 N 1.34074 * 126.67490 * 0.02562 * 22 21 16 24 24 N 1.28982 * 107.26367 * 179.97438 * 23 22 21 25 25 N 1.28721 * 108.95684 * 359.97438 * 24 23 22 26 26 H 0.97005 * 125.34127 * 180.02562 * 25 24 23 27 27 N 1.28875 * 109.32669 * 359.75513 * 25 24 23 28 28 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47496 * 59.99325 * 9 7 2 30 30 H 1.08998 * 109.46755 * 299.99022 * 9 7 2 31 31 H 1.09004 * 109.47187 * 59.99797 * 10 9 7 32 32 H 1.08995 * 109.47424 * 299.99712 * 10 9 7 33 33 H 0.97000 * 119.99284 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.98527 * 359.97438 * 13 12 11 35 35 H 1.07993 * 119.84256 * 180.27496 * 14 13 12 36 36 H 1.07996 * 119.86065 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99666 * 359.97438 * 18 17 16 38 38 H 0.96998 * 120.00143 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.2101 -6.1386 0.0007 13 6 3.5981 -6.1418 0.0003 14 6 4.2867 -7.3392 0.0058 15 6 3.5992 -8.5405 0.0064 16 6 2.2191 -8.5525 0.0020 17 16 1.3508 -10.0857 0.0035 18 7 0.5230 -10.1789 1.4347 19 8 0.3710 -9.9929 -1.0215 20 8 2.3387 -11.1063 0.0442 21 6 1.5134 -7.3522 -0.0035 22 6 0.0297 -7.3598 -0.0077 23 7 -0.7656 -8.4391 -0.0062 24 7 -1.9842 -8.0167 -0.0105 25 7 -1.9806 -6.7295 -0.0140 26 1 -2.7703 -6.1661 -0.0172 27 7 -0.7633 -6.3064 -0.0068 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 2.8720 -3.6043 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 0.5429 -4.9307 0.0011 34 1 4.1400 -5.2076 -0.0002 35 1 5.3666 -7.3380 0.0099 36 1 4.1451 -9.4724 0.0103 37 1 0.5841 -9.4557 2.0783 38 1 -0.0230 -10.9566 1.6295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:52 Heat of formation + Delta-G solvation = 73.918410 kcal Electronic energy + Delta-G solvation = -27129.034518 eV Core-core repulsion = 23136.428170 eV Total energy + Delta-G solvation = -3992.606348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.49751 -40.70482 -38.06902 -37.30268 -36.66835 -35.45822 -35.20480 -34.58741 -33.79206 -32.29735 -31.84589 -29.61834 -26.72433 -25.76547 -25.56231 -23.96437 -22.65432 -22.41581 -20.38208 -20.19346 -19.31817 -18.45101 -18.21710 -18.14561 -17.77878 -17.18849 -16.82280 -16.58754 -16.32506 -15.99407 -15.90088 -15.32227 -15.20109 -14.68816 -14.41964 -14.24535 -13.66369 -13.35136 -13.10167 -13.07035 -13.02828 -12.96228 -12.81915 -12.76093 -12.50582 -12.44843 -12.37251 -12.04422 -11.75547 -11.69157 -11.56465 -11.36475 -11.20710 -11.02976 -10.58730 -10.12283 -8.46442 -8.24710 -6.35684 -0.66560 -0.36021 0.11461 0.33972 1.24025 1.34747 1.42452 1.42486 1.53592 2.26326 2.35855 2.52631 2.56848 2.60635 2.86497 3.04036 3.10835 3.71388 4.06250 4.10319 4.17800 4.31093 4.32288 4.45672 4.51340 4.58399 4.73176 4.86316 5.02967 5.14471 5.34945 5.36971 5.38774 5.55994 5.56024 5.64774 5.76398 6.09627 6.29658 6.45210 6.75744 6.82322 7.11363 7.34443 8.87539 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003172 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.605563 B = 8826.433941 C =10148.496181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.022 3.978 10 C 0.135 3.865 11 N -0.733 5.733 12 C 0.227 3.773 13 C -0.152 4.152 14 C -0.056 4.056 15 C -0.085 4.085 16 C -0.599 4.599 17 S 2.728 3.272 18 N -1.225 6.225 19 O -0.971 6.971 20 O -0.996 6.996 21 C -0.044 4.044 22 C 0.185 3.815 23 N -0.248 5.248 24 N -0.041 5.041 25 N -0.205 5.205 26 H 0.492 0.508 27 N -0.314 5.314 28 H 0.264 0.736 29 H -0.006 1.006 30 H -0.002 1.002 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.408 0.592 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.419 0.581 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -17.948 3.834 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.089 0.911 9 C -0.015 4.015 10 C 0.012 3.988 11 N -0.364 5.364 12 C 0.115 3.885 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.688 4.688 17 S 2.816 3.184 18 N -0.902 5.902 19 O -0.959 6.959 20 O -0.985 6.985 21 C -0.055 4.055 22 C -0.094 4.094 23 N -0.123 5.123 24 N -0.037 5.037 25 N -0.055 5.055 26 H 0.350 0.650 27 N -0.167 5.167 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.251 0.749 34 H 0.167 0.833 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.246 0.754 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.466 -18.535 2.976 18.933 hybrid contribution -0.736 2.494 0.365 2.626 sum 1.730 -16.040 3.342 16.476 Atomic orbital electron populations 1.70091 1.07839 1.27870 1.51260 1.25938 0.95721 1.03354 0.94527 0.85422 0.78795 0.78285 0.78407 1.19996 1.21117 1.18297 1.21494 0.93913 0.91391 1.51081 0.91146 1.19075 0.94488 0.92557 0.95406 1.21471 0.95207 0.81492 1.00644 1.45781 1.10293 1.02753 1.77541 1.18168 0.92795 0.85044 0.92460 1.21322 0.90828 1.01134 1.04203 1.21620 1.02189 0.90149 0.93695 1.21055 0.90684 1.00887 0.98005 1.30341 1.06665 1.16645 1.15115 1.00595 0.72595 0.71962 0.73258 1.52438 1.67331 1.32568 1.37877 1.93607 1.59364 1.85525 1.57360 1.93545 1.61994 1.55948 1.86992 1.16087 0.83735 0.92579 1.13074 1.23959 0.96444 0.85647 1.03314 1.76424 0.95094 1.23511 1.17221 1.78792 1.16414 0.94127 1.14378 1.47730 1.07421 1.05594 1.44733 0.64964 1.74308 0.92045 1.27035 1.23320 0.92755 0.98735 0.98380 0.91705 0.92132 0.74890 0.83260 0.80592 0.81595 0.75366 0.74022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.54 -28.46 9.11 25.60 0.23 -28.22 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.09 5.09 29.85 0.15 1.24 16 10 C 0.14 5.09 4.85 86.38 0.42 5.51 16 11 N -0.73 -25.34 5.66 -338.81 -1.92 -27.25 16 12 C 0.23 6.82 6.66 38.47 0.26 7.08 16 13 C -0.15 -3.64 9.30 22.38 0.21 -3.43 16 14 C -0.06 -1.03 10.03 22.28 0.22 -0.81 16 15 C -0.08 -1.73 9.54 22.26 0.21 -1.52 16 16 C -0.60 -14.90 5.90 22.46 0.13 -14.77 16 17 S 2.73 66.41 5.47 -56.49 -0.31 66.10 16 18 N -1.22 -21.17 8.00 37.02 0.30 -20.87 16 19 O -0.97 -30.64 14.59 -128.00 -1.87 -32.50 16 20 O -1.00 -27.07 16.96 -128.00 -2.17 -29.24 16 21 C -0.04 -1.29 5.89 -19.93 -0.12 -1.41 16 22 C 0.19 5.59 7.63 137.33 1.05 6.64 16 23 N -0.25 -7.14 6.39 -52.22 -0.33 -7.47 16 24 N -0.04 -1.06 13.47 37.02 0.50 -0.56 16 25 N -0.21 -4.65 7.90 37.02 0.29 -4.35 16 26 H 0.49 6.73 8.96 -347.53 -3.12 3.61 16 27 N -0.31 -9.21 9.33 -52.17 -0.49 -9.69 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 31 H 0.06 2.28 7.95 -2.38 -0.02 2.26 16 32 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 33 H 0.41 14.69 5.06 -92.71 -0.47 14.22 16 34 H 0.15 3.26 6.73 -2.91 -0.02 3.24 16 35 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.17 2.70 7.32 -2.91 -0.02 2.68 16 37 H 0.42 6.16 8.92 -96.75 -0.86 5.29 16 38 H 0.43 5.59 8.96 -96.75 -0.87 4.72 16 Total: -1.00 -75.77 333.60 -4.59 -80.36 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -4.13 Total: 24.32 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 3.23 Total: -29.06 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -1.37 Total: -123.77 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -4.04 Total: -61.74 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 66.41 SS G_CDS: -0.31 Total: 66.10 kcal Total: -75.77 -4.59 -80.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.279 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds