Wall clock time and date at job start Tue Mar 31 2020 20:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00316 * 2 1 4 4 H 1.48503 * 109.46885 * 269.99932 * 3 2 1 5 5 H 1.48505 * 109.47115 * 29.99661 * 3 2 1 6 6 H 1.48501 * 109.47442 * 149.99741 * 3 2 1 7 7 C 1.37875 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00204 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47044 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47094 * 179.97438 * 11 10 9 13 13 S 1.65597 * 119.99926 * 165.27799 * 12 11 10 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 11 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 11 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 11 17 17 C 1.38306 * 120.36041 * 269.72657 * 16 13 12 18 18 N 1.31891 * 121.01667 * 179.72986 * 17 16 13 19 19 C 1.31750 * 121.84960 * 0.57706 * 18 17 16 20 20 C 1.39260 * 120.60079 * 359.68525 * 19 18 17 21 21 C 1.48464 * 120.53137 * 180.02562 * 20 19 18 22 22 N 1.34052 * 126.67333 * 179.66811 * 21 20 19 23 23 N 1.28987 * 107.26695 * 179.89601 * 22 21 20 24 24 N 1.28735 * 108.94545 * 0.37304 * 23 22 21 25 25 H 0.96997 * 125.33979 * 179.80261 * 24 23 22 26 26 N 1.28874 * 109.31285 * 359.76380 * 24 23 22 27 27 C 1.38426 * 120.36038 * 89.99980 * 16 13 12 28 28 H 0.97004 * 119.99759 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47804 * 59.99925 * 9 7 2 30 30 H 1.09002 * 109.47061 * 299.99380 * 9 7 2 31 31 H 1.08994 * 109.47357 * 60.00031 * 10 9 7 32 32 H 1.09002 * 109.47067 * 299.99259 * 10 9 7 33 33 H 1.09007 * 109.47007 * 59.99772 * 11 10 9 34 34 H 1.08995 * 109.47080 * 300.00016 * 11 10 9 35 35 H 0.97001 * 119.99790 * 344.99588 * 12 11 10 36 36 H 1.08000 * 119.49303 * 0.02562 * 17 16 13 37 37 H 1.08003 * 119.69782 * 179.70951 * 19 18 17 38 38 H 1.08001 * 120.84402 * 359.95621 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5515 -2.6368 0.0009 12 7 6.0397 -4.0180 0.0014 13 16 7.6234 -4.3365 -0.3630 14 8 7.7891 -5.7422 -0.2377 15 8 7.9115 -3.6233 -1.5579 16 6 8.6072 -3.6047 0.9025 17 6 9.0606 -2.3047 0.7716 18 7 9.7933 -1.7425 1.7132 19 6 10.1347 -2.3904 2.8084 20 6 9.7218 -3.7047 3.0122 21 6 10.1068 -4.4332 4.2472 22 7 9.7748 -5.6909 4.5713 23 7 10.3073 -5.9439 5.7185 24 7 10.9453 -4.9013 6.1223 25 1 11.4319 -4.8301 6.9584 26 7 10.8368 -3.9673 5.2409 27 6 8.9394 -4.3267 2.0359 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6801 0.8911 30 1 3.8752 -0.6806 -0.8889 31 1 3.6584 -3.1503 -0.8892 32 1 3.6578 -3.1507 0.8908 33 1 5.9148 -2.1229 0.8910 34 1 5.9148 -2.1229 -0.8890 35 1 5.4363 -4.7456 0.2192 36 1 8.8068 -1.7396 -0.1130 37 1 10.7398 -1.8977 3.5550 38 1 8.6020 -5.3448 2.1625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:57 Heat of formation + Delta-G solvation = 81.550581 kcal Electronic energy + Delta-G solvation = -25744.025544 eV Core-core repulsion = 21751.750152 eV Total energy + Delta-G solvation = -3992.275392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.99009 -40.69318 -37.44099 -36.19535 -36.02103 -35.15146 -34.35822 -33.27258 -33.05809 -31.43952 -31.22209 -26.87667 -25.77268 -25.44901 -24.09586 -22.91169 -22.84037 -20.58508 -19.94339 -19.44941 -18.30516 -17.67933 -17.59534 -17.23128 -17.04994 -16.81155 -15.92518 -15.63650 -14.84191 -14.67336 -14.58650 -14.53580 -14.08154 -13.78294 -13.26243 -12.96934 -12.86026 -12.51340 -12.40683 -12.25116 -12.15477 -12.02926 -11.84100 -11.76555 -11.75094 -11.64732 -11.18132 -10.97381 -10.71958 -10.19354 -10.10908 -9.88101 -9.75232 -9.62206 -9.42739 -9.24599 -8.57317 -6.07654 -4.06580 -0.16845 0.15230 0.34732 0.65279 1.70085 1.72833 2.78232 2.99522 3.10758 3.29292 3.37007 3.38919 3.53182 3.57999 3.85309 4.04328 4.18803 4.31676 4.42140 4.65298 4.74001 4.87080 5.00579 5.13312 5.24154 5.26045 5.38409 5.45937 5.68847 5.82998 5.85900 5.86402 6.36737 6.51896 6.72931 6.95492 7.18389 7.19701 7.32776 7.60052 7.73870 8.48906 8.96798 9.54203 11.05653 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.002742 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.044745 B =10207.974042 C =11035.928988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.108 4.108 11 C 0.107 3.893 12 N -1.109 6.109 13 S 2.701 3.299 14 O -0.955 6.955 15 O -0.947 6.947 16 C -0.735 4.735 17 C 0.220 3.780 18 N -0.488 5.488 19 C 0.193 3.807 20 C -0.093 4.093 21 C 0.222 3.778 22 N -0.263 5.263 23 N -0.041 5.041 24 N -0.223 5.223 25 H 0.478 0.522 26 N -0.289 5.289 27 C 0.070 3.930 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.421 0.579 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.115 -8.690 10.345 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.147 4.147 11 C -0.018 4.018 12 N -0.871 5.871 13 S 2.786 3.214 14 O -0.945 6.945 15 O -0.937 6.937 16 C -0.821 4.821 17 C 0.061 3.939 18 N -0.196 5.196 19 C 0.034 3.966 20 C -0.100 4.100 21 C -0.058 4.058 22 N -0.136 5.136 23 N -0.036 5.036 24 N -0.069 5.069 25 H 0.333 0.667 26 N -0.141 5.141 27 C 0.042 3.958 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.257 0.743 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 25.716 -8.524 9.920 28.851 hybrid contribution 0.245 0.591 1.319 1.466 sum 25.961 -7.933 11.239 29.381 Atomic orbital electron populations 1.69915 1.06339 1.26954 1.50938 1.25040 0.94746 0.99237 0.94504 0.86780 0.80320 0.83566 0.78619 1.20154 1.21440 1.18953 1.21095 0.89310 0.94540 1.51089 0.90953 1.19558 0.97442 0.91576 0.96647 1.21671 0.89883 1.00868 1.02290 1.21682 0.98987 0.79513 1.01641 1.55471 1.27263 1.16170 1.88220 1.01910 0.72624 0.73232 0.73659 1.93607 1.85507 1.28723 1.86683 1.93618 1.84091 1.74622 1.41351 1.32244 1.22429 1.08241 1.19177 1.22944 0.85680 0.89381 0.95894 1.68006 1.13190 1.36696 1.01729 1.23298 0.90848 0.88974 0.93501 1.18233 1.04589 0.95488 0.91649 1.23250 0.97154 0.90244 0.95197 1.76153 1.18983 1.13243 1.05187 1.78975 1.05940 1.11725 1.06979 1.47745 1.34903 1.05754 1.18540 0.66719 1.74890 1.20968 1.17629 1.00622 1.21368 0.87050 0.99418 0.87962 0.92689 0.96383 0.96556 0.91571 0.91889 0.92179 0.90150 0.74285 0.80008 0.80840 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.11 -1.87 5.30 -26.73 -0.14 -2.01 16 11 C 0.11 1.44 6.22 -4.04 -0.03 1.42 16 12 N -1.11 -12.60 6.00 -10.61 -0.06 -12.66 16 13 S 2.70 31.28 5.75 -107.50 -0.62 30.66 16 14 O -0.96 -12.84 17.35 -57.17 -0.99 -13.84 16 15 O -0.95 -13.22 16.78 -57.17 -0.96 -14.18 16 16 C -0.74 -7.67 5.95 -39.49 -0.24 -7.91 16 17 C 0.22 2.28 10.68 -17.50 -0.19 2.10 16 18 N -0.49 -5.17 10.35 -12.98 -0.13 -5.31 16 19 C 0.19 1.76 10.87 -17.21 -0.19 1.57 16 20 C -0.09 -0.90 5.89 -104.75 -0.62 -1.52 16 21 C 0.22 2.13 7.95 -156.30 -1.24 0.89 16 22 N -0.26 -2.77 12.31 32.16 0.40 -2.37 16 23 N -0.04 -0.35 13.47 60.35 0.81 0.47 16 24 N -0.22 -1.20 7.90 60.35 0.48 -0.73 16 25 H 0.48 0.21 8.96 -340.36 -3.05 -2.84 16 26 N -0.29 -2.21 12.11 32.17 0.39 -1.82 16 27 C 0.07 0.71 9.31 -38.96 -0.36 0.35 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 30 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.06 7.76 -51.93 -0.40 0.65 16 35 H 0.42 4.16 8.65 -34.47 -0.30 3.86 16 36 H 0.18 1.60 7.61 -52.49 -0.40 1.20 16 37 H 0.17 1.15 7.90 -52.48 -0.41 0.74 16 38 H 0.17 1.55 7.61 -52.49 -0.40 1.15 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -36.63 349.53 -9.45 -46.08 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.59 Total: -2.98 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.54 Total: -18.42 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 2.65 Total: -49.03 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.95 Total: -28.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 31.28 SS G_CDS: -0.62 Total: 30.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.63 -9.45 -46.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.627 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds