Wall clock time and date at job start Tue Mar 31 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00316 * 2 1 4 4 H 1.48503 * 109.46885 * 269.99932 * 3 2 1 5 5 H 1.48505 * 109.47115 * 29.99661 * 3 2 1 6 6 H 1.48501 * 109.47442 * 149.99741 * 3 2 1 7 7 C 1.37875 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00204 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47044 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47094 * 179.97438 * 11 10 9 13 13 S 1.65597 * 119.99926 * 165.27799 * 12 11 10 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 11 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 11 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 11 17 17 C 1.38306 * 120.36041 * 269.72657 * 16 13 12 18 18 N 1.31891 * 121.01667 * 179.72986 * 17 16 13 19 19 C 1.31750 * 121.84960 * 0.57706 * 18 17 16 20 20 C 1.39260 * 120.60079 * 359.68525 * 19 18 17 21 21 C 1.48464 * 120.53137 * 180.02562 * 20 19 18 22 22 N 1.34052 * 126.67333 * 179.66811 * 21 20 19 23 23 N 1.28987 * 107.26695 * 179.89601 * 22 21 20 24 24 N 1.28735 * 108.94545 * 0.37304 * 23 22 21 25 25 H 0.96997 * 125.33979 * 179.80261 * 24 23 22 26 26 N 1.28874 * 109.31285 * 359.76380 * 24 23 22 27 27 C 1.38426 * 120.36038 * 89.99980 * 16 13 12 28 28 H 0.97004 * 119.99759 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47804 * 59.99925 * 9 7 2 30 30 H 1.09002 * 109.47061 * 299.99380 * 9 7 2 31 31 H 1.08994 * 109.47357 * 60.00031 * 10 9 7 32 32 H 1.09002 * 109.47067 * 299.99259 * 10 9 7 33 33 H 1.09007 * 109.47007 * 59.99772 * 11 10 9 34 34 H 1.08995 * 109.47080 * 300.00016 * 11 10 9 35 35 H 0.97001 * 119.99790 * 344.99588 * 12 11 10 36 36 H 1.08000 * 119.49303 * 0.02562 * 17 16 13 37 37 H 1.08003 * 119.69782 * 179.70951 * 19 18 17 38 38 H 1.08001 * 120.84402 * 359.95621 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5515 -2.6368 0.0009 12 7 6.0397 -4.0180 0.0014 13 16 7.6234 -4.3365 -0.3630 14 8 7.7891 -5.7422 -0.2377 15 8 7.9115 -3.6233 -1.5579 16 6 8.6072 -3.6047 0.9025 17 6 9.0606 -2.3047 0.7716 18 7 9.7933 -1.7425 1.7132 19 6 10.1347 -2.3904 2.8084 20 6 9.7218 -3.7047 3.0122 21 6 10.1068 -4.4332 4.2472 22 7 9.7748 -5.6909 4.5713 23 7 10.3073 -5.9439 5.7185 24 7 10.9453 -4.9013 6.1223 25 1 11.4319 -4.8301 6.9584 26 7 10.8368 -3.9673 5.2409 27 6 8.9394 -4.3267 2.0359 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6801 0.8911 30 1 3.8752 -0.6806 -0.8889 31 1 3.6584 -3.1503 -0.8892 32 1 3.6578 -3.1507 0.8908 33 1 5.9148 -2.1229 0.8910 34 1 5.9148 -2.1229 -0.8890 35 1 5.4363 -4.7456 0.2192 36 1 8.8068 -1.7396 -0.1130 37 1 10.7398 -1.8977 3.5550 38 1 8.6020 -5.3448 2.1625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:56 Heat of formation + Delta-G solvation = 51.109905 kcal Electronic energy + Delta-G solvation = -25745.345551 eV Core-core repulsion = 21751.750152 eV Total energy + Delta-G solvation = -3993.595399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.60433 -41.43075 -38.45615 -37.40398 -37.04060 -35.79737 -35.09688 -35.00749 -33.81953 -32.94175 -32.12658 -28.52009 -26.44628 -26.14168 -24.81684 -24.42954 -23.56947 -22.09941 -20.69929 -20.27563 -19.11832 -18.95440 -18.47583 -18.27457 -17.93475 -17.85300 -16.99072 -16.43068 -16.25587 -16.00592 -15.53685 -15.36898 -15.21298 -14.77708 -14.52272 -14.07831 -13.96117 -13.80106 -13.48609 -13.31114 -13.27109 -13.19745 -12.77180 -12.69045 -12.66926 -12.63856 -12.39491 -12.31408 -11.79742 -11.61023 -11.57185 -11.40933 -11.26268 -10.92606 -10.71208 -10.42603 -10.31995 -8.24549 -6.28622 -0.91707 -0.70671 -0.43610 0.03274 1.02274 1.28847 1.42410 1.43328 1.54902 1.88821 2.31344 2.36772 2.41293 2.65449 2.90189 3.10619 3.11793 3.27207 3.49095 3.57762 3.85516 4.02745 4.04466 4.18165 4.30072 4.34399 4.43380 4.53025 4.68148 4.70110 4.96893 5.11638 5.13167 5.15277 5.51756 5.58746 5.65767 5.71911 6.04871 6.33636 6.45078 6.80731 6.97371 7.36123 8.92266 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.002742 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.044745 B =10207.974042 C =11035.928988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.031 0.969 9 C -0.016 4.016 10 C -0.103 4.103 11 C 0.113 3.887 12 N -1.106 6.106 13 S 2.723 3.277 14 O -0.975 6.975 15 O -0.970 6.970 16 C -0.734 4.734 17 C 0.214 3.786 18 N -0.501 5.501 19 C 0.198 3.802 20 C -0.095 4.095 21 C 0.210 3.790 22 N -0.292 5.292 23 N -0.050 5.050 24 N -0.193 5.193 25 H 0.497 0.503 26 N -0.282 5.282 27 C 0.064 3.936 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.428 0.572 36 H 0.196 0.804 37 H 0.198 0.802 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.917 -7.601 11.461 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.160 1.160 7 C -0.569 4.569 8 H 0.050 0.950 9 C -0.054 4.054 10 C -0.142 4.142 11 C -0.012 4.012 12 N -0.868 5.868 13 S 2.811 3.189 14 O -0.965 6.965 15 O -0.960 6.960 16 C -0.822 4.822 17 C 0.055 3.945 18 N -0.209 5.209 19 C 0.040 3.960 20 C -0.101 4.101 21 C -0.071 4.071 22 N -0.164 5.164 23 N -0.045 5.045 24 N -0.045 5.045 25 H 0.357 0.643 26 N -0.135 5.135 27 C 0.035 3.965 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.265 0.735 36 H 0.213 0.787 37 H 0.215 0.785 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 28.529 -7.482 11.041 31.493 hybrid contribution -0.606 0.163 1.085 1.253 sum 27.923 -7.319 12.126 31.310 Atomic orbital electron populations 1.70087 1.08492 1.28069 1.53013 1.26075 0.95602 1.03754 0.94270 0.85659 0.79776 0.77984 0.79247 1.19235 1.21595 1.16044 1.21537 0.92411 0.93002 1.49976 0.95020 1.19541 0.93682 0.94843 0.97343 1.21501 0.92821 0.97878 1.02044 1.21520 0.95956 0.80658 1.03112 1.55291 1.27511 1.15700 1.88336 1.01018 0.72247 0.72412 0.73259 1.93580 1.85748 1.30122 1.87056 1.93586 1.84409 1.74937 1.43059 1.31918 1.22888 1.08462 1.18885 1.23213 0.85526 0.89371 0.96377 1.68065 1.13583 1.37026 1.02209 1.23666 0.90253 0.88710 0.93415 1.18288 1.04417 0.95743 0.91649 1.23255 0.97918 0.90217 0.95665 1.76133 1.20166 1.14005 1.06136 1.78923 1.06477 1.12417 1.06698 1.47825 1.33416 1.04586 1.18669 0.64283 1.74858 1.20390 1.17795 1.00437 1.21480 0.87239 0.99660 0.88090 0.92673 0.95318 0.95565 0.92317 0.91929 0.90195 0.89385 0.73494 0.78739 0.78524 0.81437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 3 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.53 -29.56 9.66 25.60 0.25 -29.31 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C -0.02 -0.67 4.04 29.85 0.12 -0.55 16 10 C -0.10 -3.46 5.30 30.60 0.16 -3.30 16 11 C 0.11 2.79 6.22 86.38 0.54 3.33 16 12 N -1.11 -23.39 6.00 -187.48 -1.12 -24.51 16 13 S 2.72 59.63 5.75 -56.49 -0.32 59.31 16 14 O -0.98 -25.46 17.35 -128.00 -2.22 -27.68 16 15 O -0.97 -25.74 16.78 -128.00 -2.15 -27.89 16 16 C -0.73 -14.12 5.95 22.33 0.13 -13.99 16 17 C 0.21 3.99 10.68 84.70 0.90 4.90 16 18 N -0.50 -9.44 10.35 -194.99 -2.02 -11.46 16 19 C 0.20 3.15 10.87 84.95 0.92 4.07 16 20 C -0.09 -1.67 5.89 -19.95 -0.12 -1.79 16 21 C 0.21 3.68 7.95 137.38 1.09 4.77 16 22 N -0.29 -5.82 12.31 -52.18 -0.64 -6.46 16 23 N -0.05 -0.77 13.47 37.02 0.50 -0.27 16 24 N -0.19 -1.65 7.90 37.02 0.29 -1.36 16 25 H 0.50 -0.85 8.96 -347.53 -3.12 -3.97 16 26 N -0.28 -3.65 12.11 -52.13 -0.63 -4.28 16 27 C 0.06 1.21 9.31 22.67 0.21 1.42 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 30 H 0.03 1.07 7.57 -2.39 -0.02 1.05 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.09 2.07 7.76 -2.39 -0.02 2.05 16 35 H 0.43 7.95 8.65 -96.74 -0.84 7.12 16 36 H 0.20 2.99 7.61 -2.91 -0.02 2.96 16 37 H 0.20 2.04 7.90 -2.91 -0.02 2.02 16 38 H 0.17 3.02 7.61 -2.91 -0.02 3.00 16 Total: -1.00 -79.36 349.53 -4.32 -83.68 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.86 Total: 5.55 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 4.68 Total: -30.05 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -3.33 Total: -107.59 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -4.37 Total: -55.58 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 59.63 SS G_CDS: -0.32 Total: 59.31 kcal Total: -79.36 -4.32 -83.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.789 kcal (2) G-P(sol) polarization free energy of solvation -79.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds