Wall clock time and date at job start Tue Mar 31 2020 20:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 119.99794 * 2 1 4 4 C 1.50701 * 109.47589 * 280.40496 * 3 2 1 5 5 H 1.08001 * 119.99890 * 6.19742 * 4 3 2 6 6 C 1.37873 * 120.00252 * 186.19872 * 4 3 2 7 7 N 1.31523 * 119.99862 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00402 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46852 * 59.99708 * 8 6 4 10 10 H 1.48494 * 109.47446 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46781 * 300.00179 * 8 6 4 12 12 S 1.65602 * 119.99863 * 180.02562 * 2 1 3 13 13 O 1.42089 * 106.40544 * 326.47412 * 12 2 1 14 14 O 1.42106 * 106.39933 * 193.55000 * 12 2 1 15 15 N 1.65598 * 107.21815 * 80.01531 * 12 2 1 16 16 C 1.46499 * 120.00269 * 295.48435 * 15 12 2 17 17 H 1.09006 * 109.47099 * 352.19366 * 16 15 12 18 18 C 1.53001 * 109.47693 * 232.19434 * 16 15 12 19 19 C 1.52998 * 109.47043 * 66.07873 * 18 16 15 20 20 O 1.43755 * 109.63402 * 300.45825 * 19 18 16 21 21 C 1.44780 * 104.81404 * 215.80742 * 20 19 18 22 22 C 1.54911 * 101.72522 * 36.10370 * 21 20 19 23 23 O 1.43370 * 109.63261 * 181.09293 * 19 18 16 24 24 C 1.50701 * 109.47252 * 112.19073 * 16 15 12 25 25 O 1.20825 * 119.99956 * 359.97438 * 24 16 15 26 26 O 1.34236 * 119.99970 * 180.02562 * 24 16 15 27 27 H 1.08996 * 109.47119 * 269.99294 * 1 2 3 28 28 H 1.09000 * 109.47563 * 30.00008 * 1 2 3 29 29 H 1.09010 * 109.47209 * 149.99636 * 1 2 3 30 30 H 1.09005 * 109.47097 * 40.40536 * 3 2 1 31 31 H 1.09004 * 109.47177 * 160.40411 * 3 2 1 32 32 H 0.97003 * 120.00029 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00376 * 115.48611 * 15 12 2 34 34 H 1.09000 * 109.46532 * 306.08495 * 18 16 15 35 35 H 1.09002 * 109.47250 * 186.08447 * 18 16 15 36 36 H 1.09006 * 109.62927 * 60.70326 * 19 18 16 37 37 H 1.09003 * 110.98004 * 277.98993 * 21 20 19 38 38 H 1.09001 * 111.00491 * 154.22902 * 21 20 19 39 39 H 1.08994 * 110.69991 * 206.04354 * 22 21 20 40 40 H 1.09005 * 110.84073 * 82.89784 * 22 21 20 41 41 H 0.96695 * 116.99815 * 179.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.2264 1.8321 -1.3974 5 1 1.6640 1.3524 -2.1848 6 6 2.9709 2.9599 -1.6707 7 7 3.6554 3.5444 -0.7117 8 14 3.0074 3.6579 -3.4030 9 1 1.6301 4.0283 -3.8165 10 1 3.8747 4.8629 -3.4330 11 1 3.5469 2.6369 -4.3367 12 16 2.2930 -1.4342 -0.0006 13 8 1.5096 -2.3502 0.7518 14 8 3.6413 -1.1192 0.3189 15 7 2.3006 -1.9951 -1.5587 16 6 1.0422 -2.3697 -2.2086 17 1 0.2342 -2.3452 -1.4772 18 6 1.1660 -3.7817 -2.7846 19 6 1.3189 -4.7871 -1.6415 20 8 2.4924 -4.4707 -0.8737 21 6 3.0326 -5.7542 -0.4774 22 6 2.7297 -6.6218 -1.7245 23 8 1.4609 -6.1089 -2.1784 24 6 0.7425 -1.3979 -3.3208 25 8 1.5019 -0.4858 -3.5471 26 8 -0.3687 -1.5451 -4.0594 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.7013 1.9746 0.6662 31 1 3.2176 1.0993 0.3447 32 1 4.1795 4.3376 -0.9041 33 1 3.1382 -2.0758 -2.0411 34 1 2.0401 -3.8338 -3.4337 35 1 0.2712 -4.0191 -3.3601 36 1 0.4404 -4.7459 -0.9975 37 1 2.5163 -6.1404 0.4015 38 1 4.1059 -5.6881 -0.2992 39 1 2.6443 -7.6734 -1.4507 40 1 3.4959 -6.4848 -2.4876 41 1 -0.5183 -0.8970 -4.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598468430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:08 Heat of formation + Delta-G solvation = -239.259700 kcal Electronic energy + Delta-G solvation = -30226.405238 eV Core-core repulsion = 25848.324047 eV Total energy + Delta-G solvation = -4378.081192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63314 -39.98126 -36.67393 -36.21412 -35.53511 -35.42781 -35.12537 -35.02612 -32.34613 -31.43973 -29.18188 -27.71741 -26.07053 -25.08607 -23.45388 -22.32072 -22.14571 -21.22127 -19.17976 -17.96092 -17.45347 -17.35883 -16.92282 -16.75437 -16.56340 -16.22678 -15.80053 -15.60672 -15.23118 -14.89980 -14.69667 -14.25844 -13.77305 -13.40546 -13.32266 -13.28571 -13.01434 -12.77339 -12.75913 -12.40196 -12.10665 -11.91610 -11.61589 -11.49221 -11.37318 -11.35499 -11.23366 -11.07359 -11.00575 -10.71996 -10.52198 -10.41932 -10.36301 -10.00772 -9.82991 -9.56273 -9.32470 -8.35297 -7.98453 -5.96536 -4.00137 1.30232 2.35423 2.92285 3.22846 3.37269 3.41407 3.47368 3.59718 3.84876 4.22023 4.39120 4.51917 4.57231 4.62647 4.75014 4.81208 4.93468 5.01484 5.12017 5.30641 5.37180 5.37864 5.40745 5.49636 5.58412 5.65450 5.83549 5.97838 6.02893 6.24730 6.58599 6.63968 6.89760 7.17216 7.41709 7.53831 7.71430 7.98542 8.11227 8.31443 9.09636 9.65649 11.12166 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.004839 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.607392 B = 5785.230950 C = 6564.469474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.997 5.997 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.275 1.275 12 S 2.791 3.209 13 O -0.989 6.989 14 O -0.972 6.972 15 N -1.091 6.091 16 C 0.180 3.820 17 H 0.123 0.877 18 C -0.135 4.135 19 C 0.238 3.762 20 O -0.361 6.361 21 C 0.013 3.987 22 C 0.021 3.979 23 O -0.386 6.386 24 C 0.447 3.553 25 O -0.459 6.459 26 O -0.524 6.524 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.262 0.738 33 H 0.420 0.580 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -18.681 -3.883 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.840 5.840 3 C 0.122 3.878 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.201 1.201 12 S 2.798 3.202 13 O -0.973 6.973 14 O -0.956 6.956 15 N -0.848 5.848 16 C 0.068 3.932 17 H 0.140 0.860 18 C -0.174 4.174 19 C 0.143 3.857 20 O -0.281 6.281 21 C -0.064 4.064 22 C -0.055 4.055 23 O -0.307 6.307 24 C 0.283 3.717 25 O -0.342 6.342 26 O -0.336 6.336 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -6.398 -18.813 -2.801 20.067 hybrid contribution 0.231 1.147 -2.016 2.331 sum -6.167 -17.665 -4.817 19.321 Atomic orbital electron populations 1.21274 0.80709 1.01514 1.00820 1.57713 1.13930 1.23769 1.88580 1.19259 0.92362 0.78442 0.97777 1.21686 1.29231 1.10852 0.95245 0.90692 1.24941 0.95166 0.96908 0.97031 1.69948 1.30637 1.20797 1.32178 0.86575 0.77669 0.78076 0.85125 1.20568 1.21594 1.20081 1.01716 0.73271 0.72349 0.72829 1.93540 1.72221 1.63148 1.68360 1.93594 1.35332 1.84308 1.82363 1.55946 1.12215 1.81637 1.34972 1.19892 0.89017 0.91274 0.92967 0.85968 1.22349 1.05350 0.91513 0.98226 1.24016 0.90516 0.81679 0.89540 1.89348 1.41646 1.26698 1.70406 1.24411 1.01534 0.83177 0.97247 1.24192 0.86079 0.99349 0.95879 1.88869 1.37510 1.29627 1.74665 1.23970 0.78983 0.85714 0.83025 1.90899 1.47214 1.30449 1.65629 1.84476 1.44020 1.57719 1.47401 0.93261 0.90636 0.94029 0.95010 0.92537 0.92817 0.74542 0.89451 0.87508 0.88886 0.90396 0.87292 0.88372 0.90637 0.73237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.30 59.85 0.62 2.40 16 2 N -1.00 -21.22 3.24 -123.05 -0.40 -21.62 16 3 C 0.24 6.35 5.43 -5.20 -0.03 6.32 16 4 C -0.53 -14.75 9.31 -34.44 -0.32 -15.07 16 5 H 0.08 2.03 5.98 -52.49 -0.31 1.72 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 S 2.79 56.32 5.62 -107.50 -0.60 55.71 16 13 O -0.99 -19.41 16.23 -61.89 -1.00 -20.42 16 14 O -0.97 -23.52 16.50 -57.17 -0.94 -24.47 16 15 N -1.09 -18.11 3.22 -5.88 -0.02 -18.13 16 16 C 0.18 2.44 2.63 -69.08 -0.18 2.25 16 17 H 0.12 1.53 5.61 -51.93 -0.29 1.24 16 18 C -0.13 -1.47 5.07 -26.73 -0.14 -1.60 16 19 C 0.24 2.76 4.08 37.16 0.15 2.91 16 20 O -0.36 -4.79 8.33 -63.08 -0.53 -5.32 16 21 C 0.01 0.12 7.95 38.17 0.30 0.43 16 22 C 0.02 0.18 8.07 38.17 0.31 0.48 16 23 O -0.39 -4.20 11.22 -59.04 -0.66 -4.86 16 24 C 0.45 6.48 7.70 36.01 0.28 6.76 16 25 O -0.46 -8.82 15.44 -18.75 -0.29 -9.11 16 26 O -0.52 -5.65 13.21 -39.27 -0.52 -6.16 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 29 H 0.04 0.59 5.80 -51.92 -0.30 0.29 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.64 6.75 -51.93 -0.35 1.29 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.42 6.76 8.96 -34.47 -0.31 6.45 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.11 0.96 7.97 -51.93 -0.41 0.54 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 3.06 9.10 45.56 0.41 3.48 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -37.50 354.83 -7.51 -45.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.50 Total: 6.29 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 0.89 Total: 6.55 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: 0.32 Total: -65.96 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -3.94 Total: -70.33 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 56.32 SS G_CDS: -0.60 Total: 55.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.50 -7.51 -45.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.248 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds