Wall clock time and date at job start Tue Mar 31 2020 20:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 119.99794 * 2 1 4 4 C 1.50701 * 109.47589 * 280.40496 * 3 2 1 5 5 H 1.08001 * 119.99890 * 6.19742 * 4 3 2 6 6 C 1.37873 * 120.00252 * 186.19872 * 4 3 2 7 7 N 1.31523 * 119.99862 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00402 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46852 * 59.99708 * 8 6 4 10 10 H 1.48494 * 109.47446 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46781 * 300.00179 * 8 6 4 12 12 S 1.65602 * 119.99863 * 180.02562 * 2 1 3 13 13 O 1.42089 * 106.40544 * 326.47412 * 12 2 1 14 14 O 1.42106 * 106.39933 * 193.55000 * 12 2 1 15 15 N 1.65598 * 107.21815 * 80.01531 * 12 2 1 16 16 C 1.46499 * 120.00269 * 295.48435 * 15 12 2 17 17 H 1.09006 * 109.47099 * 352.19366 * 16 15 12 18 18 C 1.53001 * 109.47693 * 232.19434 * 16 15 12 19 19 C 1.52998 * 109.47043 * 66.07873 * 18 16 15 20 20 O 1.43755 * 109.63402 * 300.45825 * 19 18 16 21 21 C 1.44780 * 104.81404 * 215.80742 * 20 19 18 22 22 C 1.54911 * 101.72522 * 36.10370 * 21 20 19 23 23 O 1.43370 * 109.63261 * 181.09293 * 19 18 16 24 24 C 1.50701 * 109.47252 * 112.19073 * 16 15 12 25 25 O 1.20825 * 119.99956 * 359.97438 * 24 16 15 26 26 O 1.34236 * 119.99970 * 180.02562 * 24 16 15 27 27 H 1.08996 * 109.47119 * 269.99294 * 1 2 3 28 28 H 1.09000 * 109.47563 * 30.00008 * 1 2 3 29 29 H 1.09010 * 109.47209 * 149.99636 * 1 2 3 30 30 H 1.09005 * 109.47097 * 40.40536 * 3 2 1 31 31 H 1.09004 * 109.47177 * 160.40411 * 3 2 1 32 32 H 0.97003 * 120.00029 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00376 * 115.48611 * 15 12 2 34 34 H 1.09000 * 109.46532 * 306.08495 * 18 16 15 35 35 H 1.09002 * 109.47250 * 186.08447 * 18 16 15 36 36 H 1.09006 * 109.62927 * 60.70326 * 19 18 16 37 37 H 1.09003 * 110.98004 * 277.98993 * 21 20 19 38 38 H 1.09001 * 111.00491 * 154.22902 * 21 20 19 39 39 H 1.08994 * 110.69991 * 206.04354 * 22 21 20 40 40 H 1.09005 * 110.84073 * 82.89784 * 22 21 20 41 41 H 0.96695 * 116.99815 * 179.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.2264 1.8321 -1.3974 5 1 1.6640 1.3524 -2.1848 6 6 2.9709 2.9599 -1.6707 7 7 3.6554 3.5444 -0.7117 8 14 3.0074 3.6579 -3.4030 9 1 1.6301 4.0283 -3.8165 10 1 3.8747 4.8629 -3.4330 11 1 3.5469 2.6369 -4.3367 12 16 2.2930 -1.4342 -0.0006 13 8 1.5096 -2.3502 0.7518 14 8 3.6413 -1.1192 0.3189 15 7 2.3006 -1.9951 -1.5587 16 6 1.0422 -2.3697 -2.2086 17 1 0.2342 -2.3452 -1.4772 18 6 1.1660 -3.7817 -2.7846 19 6 1.3189 -4.7871 -1.6415 20 8 2.4924 -4.4707 -0.8737 21 6 3.0326 -5.7542 -0.4774 22 6 2.7297 -6.6218 -1.7245 23 8 1.4609 -6.1089 -2.1784 24 6 0.7425 -1.3979 -3.3208 25 8 1.5019 -0.4858 -3.5471 26 8 -0.3687 -1.5451 -4.0594 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.7013 1.9746 0.6662 31 1 3.2176 1.0993 0.3447 32 1 4.1795 4.3376 -0.9041 33 1 3.1382 -2.0758 -2.0411 34 1 2.0401 -3.8338 -3.4337 35 1 0.2712 -4.0191 -3.3601 36 1 0.4404 -4.7459 -0.9975 37 1 2.5163 -6.1404 0.4015 38 1 4.1059 -5.6881 -0.2992 39 1 2.6443 -7.6734 -1.4507 40 1 3.4959 -6.4848 -2.4876 41 1 -0.5183 -0.8970 -4.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598468430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:07 Heat of formation + Delta-G solvation = -271.215356 kcal Electronic energy + Delta-G solvation = -30227.790939 eV Core-core repulsion = 25848.324047 eV Total energy + Delta-G solvation = -4379.466893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56417 -40.98309 -38.28545 -37.38995 -37.14360 -36.82628 -36.66695 -35.88817 -34.44517 -32.42782 -30.07802 -29.63504 -27.08947 -26.81588 -24.21214 -24.11790 -23.17270 -22.29356 -20.63294 -19.22170 -18.71550 -18.49303 -18.37130 -18.14083 -17.96903 -17.59247 -17.03331 -16.70689 -16.50544 -16.38008 -15.91221 -15.50003 -15.10844 -14.95904 -14.58611 -14.30834 -14.14984 -13.96509 -13.90266 -13.70266 -13.58520 -13.39860 -13.12093 -12.99874 -12.89966 -12.81195 -12.77903 -12.47673 -12.42842 -12.36271 -12.19731 -11.94258 -11.71540 -11.57154 -11.10537 -10.85289 -10.55377 -10.44273 -9.76412 -8.13950 -6.24139 -0.28551 1.23228 1.38171 1.43080 1.50781 1.75023 2.18657 2.44469 2.56309 2.63482 3.04251 3.17981 3.43788 3.54315 3.68952 3.76272 3.95896 3.99828 4.11053 4.21133 4.24060 4.44210 4.55727 4.64406 4.66507 4.75676 4.81453 4.89922 4.95085 5.04716 5.10056 5.25877 5.46026 5.67586 5.78061 5.88000 6.05821 6.11786 6.16337 6.89684 7.09744 7.45315 8.94740 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.004839 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.607392 B = 5785.230950 C = 6564.469474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.006 6.006 3 C 0.257 3.743 4 C -0.533 4.533 5 H 0.082 0.918 6 C 0.006 3.994 7 N -0.934 5.934 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.279 1.279 12 S 2.807 3.193 13 O -0.984 6.984 14 O -1.018 7.018 15 N -1.086 6.086 16 C 0.172 3.828 17 H 0.136 0.864 18 C -0.125 4.125 19 C 0.234 3.766 20 O -0.392 6.392 21 C 0.002 3.998 22 C 0.023 3.977 23 O -0.394 6.394 24 C 0.459 3.541 25 O -0.512 6.512 26 O -0.505 6.505 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.422 0.578 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 -20.326 -5.530 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.847 5.847 3 C 0.134 3.866 4 C -0.572 4.572 5 H 0.100 0.900 6 C -0.192 4.192 7 N -0.574 5.574 8 Si 0.786 3.214 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.204 1.204 12 S 2.814 3.186 13 O -0.967 6.967 14 O -1.003 7.003 15 N -0.845 5.845 16 C 0.062 3.938 17 H 0.154 0.846 18 C -0.164 4.164 19 C 0.139 3.861 20 O -0.313 6.313 21 C -0.074 4.074 22 C -0.053 4.053 23 O -0.316 6.316 24 C 0.297 3.703 25 O -0.399 6.399 26 O -0.318 6.318 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.257 0.743 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.193 -20.490 -4.459 22.513 hybrid contribution 0.683 1.505 -1.506 2.236 sum -7.509 -18.985 -5.966 21.269 Atomic orbital electron populations 1.21555 0.78293 1.02975 1.02412 1.57615 1.15635 1.22310 1.89173 1.18766 0.90959 0.80142 0.96777 1.22011 1.28617 1.10571 0.95987 0.89966 1.25784 0.95086 0.97557 1.00777 1.70076 1.31730 1.21422 1.34215 0.85587 0.78293 0.77212 0.80347 1.19039 1.21138 1.20417 1.01081 0.72065 0.71980 0.73457 1.93538 1.71776 1.62464 1.68883 1.93529 1.38072 1.84970 1.83696 1.55586 1.13696 1.81048 1.34127 1.20213 0.87816 0.92617 0.93159 0.84643 1.22323 1.06624 0.89347 0.98102 1.24073 0.90217 0.82200 0.89627 1.89318 1.42399 1.28689 1.70887 1.24655 1.02229 0.82339 0.98146 1.24361 0.85320 1.00307 0.95324 1.88847 1.38687 1.29188 1.74829 1.24001 0.78834 0.84628 0.82796 1.90889 1.49099 1.32621 1.67317 1.84428 1.41948 1.58017 1.47454 0.91672 0.91002 0.90768 0.96324 0.96156 0.92811 0.74288 0.89326 0.84986 0.88681 0.89899 0.86277 0.85824 0.89898 0.71163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.05 10.30 127.77 1.32 4.37 16 2 N -1.01 -42.78 3.24 -543.22 -1.76 -44.54 16 3 C 0.26 13.79 5.43 85.63 0.46 14.25 16 4 C -0.53 -29.88 9.31 25.60 0.24 -29.65 16 5 H 0.08 4.44 5.98 -2.91 -0.02 4.42 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 8 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 S 2.81 113.16 5.62 -56.49 -0.32 112.84 16 13 O -0.98 -37.53 16.23 -123.49 -2.00 -39.53 16 14 O -1.02 -50.85 16.50 -128.00 -2.11 -52.96 16 15 N -1.09 -35.24 3.22 -172.52 -0.56 -35.80 16 16 C 0.17 4.29 2.63 44.25 0.12 4.41 16 17 H 0.14 2.99 5.61 -2.38 -0.01 2.97 16 18 C -0.12 -2.38 5.07 30.59 0.16 -2.22 16 19 C 0.23 4.91 4.08 71.98 0.29 5.21 16 20 O -0.39 -9.91 8.33 -122.36 -1.02 -10.92 16 21 C 0.00 0.04 7.95 72.64 0.58 0.62 16 22 C 0.02 0.32 8.07 72.64 0.59 0.91 16 23 O -0.39 -7.59 11.22 -126.22 -1.42 -9.01 16 24 C 0.46 12.26 7.70 71.24 0.55 12.81 16 25 O -0.51 -19.03 15.44 21.97 0.34 -18.70 16 26 O -0.51 -9.16 13.21 -51.48 -0.68 -9.84 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 29 H 0.07 1.91 5.80 -2.38 -0.01 1.90 16 30 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.02 1.24 6.75 -2.39 -0.02 1.22 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.42 13.56 8.96 -96.74 -0.87 12.70 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.13 1.86 7.97 -2.39 -0.02 1.85 16 36 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.43 4.94 9.10 -74.06 -0.67 4.27 16 Total: -1.00 -81.76 354.83 -2.90 -84.66 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.45 Total: 21.18 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 4.76 Total: 11.53 kcal Atomic # 7 Polarization: -135.35 SS G_CDS: -2.03 Total: -137.39 kcal Atomic # 8 Polarization: -134.07 SS G_CDS: -6.89 Total: -140.96 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 113.16 SS G_CDS: -0.32 Total: 112.84 kcal Total: -81.76 -2.90 -84.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.550 kcal (2) G-P(sol) polarization free energy of solvation -81.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds