Wall clock time and date at job start Tue Mar 31 2020 20:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99952 * 2 1 4 4 C 1.50699 * 109.47250 * 276.80537 * 3 2 1 5 5 H 1.08003 * 119.99828 * 4.74312 * 4 3 2 6 6 C 1.37879 * 120.00029 * 184.75528 * 4 3 2 7 7 N 1.31511 * 120.00262 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99902 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47186 * 59.99558 * 8 6 4 10 10 H 1.48502 * 109.47099 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47205 * 299.99742 * 8 6 4 12 12 S 1.65601 * 120.00068 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40280 * 150.81695 * 12 2 1 14 14 O 1.42102 * 106.40366 * 17.89202 * 12 2 1 15 15 N 1.65608 * 107.21519 * 264.35433 * 12 2 1 16 16 C 1.46493 * 120.00015 * 63.98889 * 15 12 2 17 17 H 1.08994 * 109.47331 * 23.40806 * 16 15 12 18 18 C 1.53006 * 109.47173 * 143.40767 * 16 15 12 19 19 C 1.53001 * 109.46964 * 294.99876 * 18 16 15 20 20 O 1.43779 * 110.11581 * 174.99707 * 19 18 16 21 21 C 1.43892 * 107.10456 * 144.32247 * 20 19 18 22 22 C 1.54452 * 105.17213 * 358.24671 * 21 20 19 23 23 O 1.44392 * 110.16589 * 291.77548 * 19 18 16 24 24 C 1.50707 * 109.47003 * 263.40278 * 16 15 12 25 25 O 1.20824 * 120.00119 * 336.56518 * 24 16 15 26 26 O 1.34232 * 119.99592 * 156.56238 * 24 16 15 27 27 H 1.09002 * 109.47357 * 269.99856 * 1 2 3 28 28 H 1.09001 * 109.47034 * 30.00085 * 1 2 3 29 29 H 1.09002 * 109.46802 * 150.00050 * 1 2 3 30 30 H 1.09002 * 109.47385 * 36.80570 * 3 2 1 31 31 H 1.08999 * 109.47540 * 156.80462 * 3 2 1 32 32 H 0.96999 * 120.00196 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99709 * 243.98600 * 15 12 2 34 34 H 1.08997 * 109.47231 * 174.99982 * 18 16 15 35 35 H 1.09002 * 109.46762 * 54.99610 * 18 16 15 36 36 H 1.09003 * 110.09224 * 53.40006 * 19 18 16 37 37 H 1.09007 * 110.31453 * 117.19745 * 21 20 19 38 38 H 1.08994 * 110.32367 * 239.28740 * 21 20 19 39 39 H 1.08994 * 110.72820 * 96.60215 * 22 21 20 40 40 H 1.08999 * 110.72831 * 219.90041 * 22 21 20 41 41 H 0.96704 * 116.99447 * 180.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3028 1.7879 -1.4108 5 1 1.8028 1.2697 -2.2157 6 6 3.0378 2.9244 -1.6740 7 7 3.6465 3.5556 -0.6939 8 14 3.1690 3.5676 -3.4229 9 1 1.8128 3.8908 -3.9345 10 1 4.0083 4.7926 -3.4381 11 1 3.7897 2.5311 -4.2863 12 16 2.2930 -1.4341 -0.0006 13 8 3.5244 -1.1863 -0.6652 14 8 1.3702 -2.4301 -0.4199 15 7 2.6729 -1.7815 1.5734 16 6 1.6066 -2.0342 2.5456 17 1 0.7077 -2.3604 2.0224 18 6 2.0534 -3.1255 3.5206 19 6 2.2321 -4.4433 2.7640 20 8 2.7635 -5.4498 3.6426 21 6 2.1623 -6.7014 3.2650 22 6 1.1916 -6.3530 2.1153 23 8 0.9516 -4.9369 2.3148 24 6 1.3124 -0.7685 3.3089 25 8 2.1539 0.0941 3.3957 26 8 0.1153 -0.5995 3.8922 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6666 1.9948 0.6157 31 1 3.1972 1.1111 0.4048 32 1 4.1632 4.3553 -0.8790 33 1 3.6014 -1.8176 1.8516 34 1 1.2980 -3.2513 4.2961 35 1 3.0000 -2.8382 3.9784 36 1 2.8977 -4.2992 1.9130 37 1 2.9254 -7.3983 2.9181 38 1 1.6156 -7.1277 4.1060 39 1 1.6598 -6.5320 1.1474 40 1 0.2651 -6.9197 2.2076 41 1 -0.0269 0.2289 4.3704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598468431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:12 Heat of formation + Delta-G solvation = -245.974484 kcal Electronic energy + Delta-G solvation = -29455.065707 eV Core-core repulsion = 25076.693341 eV Total energy + Delta-G solvation = -4378.372366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.112 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73680 -40.14258 -36.79886 -36.44063 -35.68301 -35.50439 -35.24703 -35.17922 -32.41332 -31.67133 -29.29238 -27.75901 -26.41364 -25.09345 -23.44276 -22.53577 -22.27139 -21.24107 -19.29779 -18.14821 -17.67908 -17.43573 -17.15334 -16.72868 -16.59536 -16.37614 -16.23840 -15.51071 -15.45314 -15.19262 -14.95543 -14.31443 -13.88638 -13.56854 -13.38022 -13.31798 -13.14608 -12.82065 -12.66868 -12.33331 -12.15169 -12.08679 -11.73798 -11.65926 -11.52583 -11.50464 -11.29191 -11.17525 -11.06097 -10.90599 -10.69860 -10.54973 -10.47210 -10.14890 -10.01373 -9.76585 -9.57086 -8.41345 -8.08610 -6.02388 -4.07212 1.09316 2.13870 2.75892 3.23272 3.34965 3.37147 3.39146 3.43639 3.67140 4.02323 4.26606 4.42253 4.46847 4.53602 4.61670 4.69388 4.84577 4.97098 4.98503 5.14957 5.23656 5.27671 5.31731 5.37955 5.47956 5.60305 5.72335 5.84819 5.94893 6.27054 6.49636 6.53793 6.63290 6.93150 7.28717 7.41244 7.61735 7.89244 7.93913 8.23487 8.94843 9.57658 11.06004 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.003762 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.080750 B = 7440.316837 C = 8079.978711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.993 5.993 3 C 0.262 3.738 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.773 3.227 13 O -0.954 6.954 14 O -0.988 6.988 15 N -1.114 6.114 16 C 0.173 3.827 17 H 0.132 0.868 18 C -0.116 4.116 19 C 0.232 3.768 20 O -0.384 6.384 21 C 0.020 3.980 22 C 0.014 3.986 23 O -0.365 6.365 24 C 0.456 3.544 25 O -0.480 6.480 26 O -0.516 6.516 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.420 0.580 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -17.816 11.628 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.837 5.837 3 C 0.140 3.860 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.781 3.219 13 O -0.938 6.938 14 O -0.972 6.972 15 N -0.871 5.871 16 C 0.062 3.938 17 H 0.150 0.850 18 C -0.155 4.155 19 C 0.137 3.863 20 O -0.305 6.305 21 C -0.056 4.056 22 C -0.063 4.063 23 O -0.285 6.285 24 C 0.294 3.706 25 O -0.365 6.365 26 O -0.328 6.328 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.413 -18.116 10.793 22.041 hybrid contribution 0.414 1.232 -0.262 1.325 sum -5.999 -16.885 10.531 20.784 Atomic orbital electron populations 1.21400 0.80088 1.03779 1.00144 1.57611 1.14282 1.23415 1.88351 1.19025 0.91093 0.78447 0.97406 1.21455 1.31726 1.10227 0.93698 0.92159 1.24945 0.95025 0.96589 0.97452 1.69926 1.32696 1.19092 1.31501 0.86571 0.78068 0.78185 0.84683 1.20199 1.21184 1.19994 1.02328 0.73704 0.73130 0.72766 1.93671 1.44624 1.85162 1.70312 1.93560 1.64970 1.58495 1.80129 1.56477 1.14571 1.87396 1.28690 1.20005 0.93349 0.89309 0.91147 0.84993 1.21857 1.05039 0.90885 0.97707 1.24284 0.83064 0.88536 0.90427 1.88893 1.66450 1.16946 1.58233 1.23981 0.96477 0.87117 0.98050 1.24304 1.00885 0.82518 0.98599 1.89533 1.31169 1.21106 1.86707 1.23975 0.79683 0.89522 0.77451 1.90803 1.47033 1.43029 1.55610 1.84508 1.36556 1.46192 1.65556 0.94636 0.90106 0.91254 0.95127 0.94111 0.92635 0.74569 0.87904 0.87961 0.89704 0.89741 0.89786 0.90345 0.87239 0.72991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.64 59.85 0.64 2.25 16 2 N -0.99 -20.97 3.23 -123.05 -0.40 -21.37 16 3 C 0.26 6.78 5.10 -5.20 -0.03 6.75 16 4 C -0.53 -15.20 9.37 -34.44 -0.32 -15.52 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 S 2.77 54.81 6.03 -107.50 -0.65 54.16 16 13 O -0.95 -22.87 17.28 -57.17 -0.99 -23.86 16 14 O -0.99 -19.56 16.04 -57.17 -0.92 -20.48 16 15 N -1.11 -16.92 4.49 -5.88 -0.03 -16.95 16 16 C 0.17 2.25 2.80 -69.08 -0.19 2.06 16 17 H 0.13 1.71 7.22 -51.93 -0.38 1.34 16 18 C -0.12 -1.22 4.93 -26.73 -0.13 -1.35 16 19 C 0.23 2.60 3.82 37.16 0.14 2.75 16 20 O -0.38 -4.11 11.26 -59.28 -0.67 -4.77 16 21 C 0.02 0.15 8.07 37.92 0.31 0.46 16 22 C 0.01 0.11 7.83 37.92 0.30 0.41 16 23 O -0.37 -4.29 11.16 -59.28 -0.66 -4.96 16 24 C 0.46 6.28 7.55 36.01 0.27 6.55 16 25 O -0.48 -8.34 17.35 -18.75 -0.33 -8.66 16 26 O -0.52 -5.47 13.42 -39.26 -0.53 -6.00 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 29 H 0.07 1.12 7.00 -51.93 -0.36 0.76 16 30 H 0.03 0.82 8.12 -51.93 -0.42 0.39 16 31 H 0.04 1.14 7.70 -51.93 -0.40 0.74 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.42 5.66 8.85 -34.47 -0.31 5.36 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.98 7.62 -51.93 -0.40 0.58 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.41 2.84 9.10 45.56 0.41 3.25 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -37.96 366.80 -7.80 -45.77 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.77 Total: 4.43 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 0.88 Total: 6.05 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.31 Total: -64.34 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -4.09 Total: -68.73 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 54.81 SS G_CDS: -0.65 Total: 54.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.96 -7.80 -45.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.208 kcal (2) G-P(sol) polarization free energy of solvation -37.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds