Wall clock time and date at job start Tue Mar 31 2020 20:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 119.99952 * 2 1 4 4 C 1.50699 * 109.47250 * 276.80537 * 3 2 1 5 5 H 1.08003 * 119.99828 * 4.74312 * 4 3 2 6 6 C 1.37879 * 120.00029 * 184.75528 * 4 3 2 7 7 N 1.31511 * 120.00262 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99902 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47186 * 59.99558 * 8 6 4 10 10 H 1.48502 * 109.47099 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47205 * 299.99742 * 8 6 4 12 12 S 1.65601 * 120.00068 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40280 * 150.81695 * 12 2 1 14 14 O 1.42102 * 106.40366 * 17.89202 * 12 2 1 15 15 N 1.65608 * 107.21519 * 264.35433 * 12 2 1 16 16 C 1.46493 * 120.00015 * 63.98889 * 15 12 2 17 17 H 1.08994 * 109.47331 * 23.40806 * 16 15 12 18 18 C 1.53006 * 109.47173 * 143.40767 * 16 15 12 19 19 C 1.53001 * 109.46964 * 294.99876 * 18 16 15 20 20 O 1.43779 * 110.11581 * 174.99707 * 19 18 16 21 21 C 1.43892 * 107.10456 * 144.32247 * 20 19 18 22 22 C 1.54452 * 105.17213 * 358.24671 * 21 20 19 23 23 O 1.44392 * 110.16589 * 291.77548 * 19 18 16 24 24 C 1.50707 * 109.47003 * 263.40278 * 16 15 12 25 25 O 1.20824 * 120.00119 * 336.56518 * 24 16 15 26 26 O 1.34232 * 119.99592 * 156.56238 * 24 16 15 27 27 H 1.09002 * 109.47357 * 269.99856 * 1 2 3 28 28 H 1.09001 * 109.47034 * 30.00085 * 1 2 3 29 29 H 1.09002 * 109.46802 * 150.00050 * 1 2 3 30 30 H 1.09002 * 109.47385 * 36.80570 * 3 2 1 31 31 H 1.08999 * 109.47540 * 156.80462 * 3 2 1 32 32 H 0.96999 * 120.00196 * 180.02562 * 7 6 4 33 33 H 0.96999 * 119.99709 * 243.98600 * 15 12 2 34 34 H 1.08997 * 109.47231 * 174.99982 * 18 16 15 35 35 H 1.09002 * 109.46762 * 54.99610 * 18 16 15 36 36 H 1.09003 * 110.09224 * 53.40006 * 19 18 16 37 37 H 1.09007 * 110.31453 * 117.19745 * 21 20 19 38 38 H 1.08994 * 110.32367 * 239.28740 * 21 20 19 39 39 H 1.08994 * 110.72820 * 96.60215 * 22 21 20 40 40 H 1.08999 * 110.72831 * 219.90041 * 22 21 20 41 41 H 0.96704 * 116.99447 * 180.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3028 1.7879 -1.4108 5 1 1.8028 1.2697 -2.2157 6 6 3.0378 2.9244 -1.6740 7 7 3.6465 3.5556 -0.6939 8 14 3.1690 3.5676 -3.4229 9 1 1.8128 3.8908 -3.9345 10 1 4.0083 4.7926 -3.4381 11 1 3.7897 2.5311 -4.2863 12 16 2.2930 -1.4341 -0.0006 13 8 3.5244 -1.1863 -0.6652 14 8 1.3702 -2.4301 -0.4199 15 7 2.6729 -1.7815 1.5734 16 6 1.6066 -2.0342 2.5456 17 1 0.7077 -2.3604 2.0224 18 6 2.0534 -3.1255 3.5206 19 6 2.2321 -4.4433 2.7640 20 8 2.7635 -5.4498 3.6426 21 6 2.1623 -6.7014 3.2650 22 6 1.1916 -6.3530 2.1153 23 8 0.9516 -4.9369 2.3148 24 6 1.3124 -0.7685 3.3089 25 8 2.1539 0.0941 3.3957 26 8 0.1153 -0.5995 3.8922 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6666 1.9948 0.6157 31 1 3.1972 1.1111 0.4048 32 1 4.1632 4.3553 -0.8790 33 1 3.6014 -1.8176 1.8516 34 1 1.2980 -3.2513 4.2961 35 1 3.0000 -2.8382 3.9784 36 1 2.8977 -4.2992 1.9130 37 1 2.9254 -7.3983 2.9181 38 1 1.6156 -7.1277 4.1060 39 1 1.6598 -6.5320 1.1474 40 1 0.2651 -6.9197 2.2076 41 1 -0.0269 0.2289 4.3704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598468431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:11 Heat of formation + Delta-G solvation = -278.710037 kcal Electronic energy + Delta-G solvation = -29456.485227 eV Core-core repulsion = 25076.693341 eV Total energy + Delta-G solvation = -4379.791887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64248 -41.06769 -38.39942 -37.53939 -37.27378 -36.96014 -36.78701 -35.95323 -34.53020 -32.60816 -30.12294 -29.69874 -27.36991 -26.84830 -24.26002 -24.08642 -23.38206 -22.28542 -20.72132 -19.34759 -18.99017 -18.53641 -18.49530 -18.35353 -17.91146 -17.46116 -17.29575 -16.94082 -16.51480 -16.44746 -16.00216 -15.90029 -15.18068 -15.03104 -14.61112 -14.35694 -14.26706 -14.06066 -13.98041 -13.60996 -13.50128 -13.40080 -13.23304 -13.06883 -12.97199 -12.94718 -12.77695 -12.52081 -12.50923 -12.41902 -12.30734 -12.13271 -11.93431 -11.79031 -11.23112 -11.04734 -10.63051 -10.59868 -9.86652 -8.20872 -6.34294 -0.47356 1.05483 1.38519 1.42833 1.49824 1.63173 2.07240 2.38244 2.49075 2.53208 2.87252 3.09545 3.32610 3.52327 3.67012 3.72111 3.80825 3.96029 4.06325 4.11914 4.14277 4.33803 4.40751 4.61339 4.61577 4.70387 4.76255 4.79055 4.84496 5.01965 5.08766 5.17419 5.38686 5.57806 5.65141 5.73815 5.91154 5.94129 6.08034 6.74588 6.94041 7.34939 8.86808 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.003762 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.080750 B = 7440.316837 C = 8079.978711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.282 3.718 4 C -0.552 4.552 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.276 1.276 12 S 2.792 3.208 13 O -1.002 7.002 14 O -0.988 6.988 15 N -1.104 6.104 16 C 0.169 3.831 17 H 0.137 0.863 18 C -0.109 4.109 19 C 0.229 3.771 20 O -0.398 6.398 21 C 0.016 3.984 22 C 0.005 3.995 23 O -0.387 6.387 24 C 0.464 3.536 25 O -0.522 6.522 26 O -0.503 6.503 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.012 0.988 32 H 0.267 0.733 33 H 0.428 0.572 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -19.013 11.976 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.844 5.844 3 C 0.159 3.841 4 C -0.591 4.591 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.201 1.201 12 S 2.800 3.200 13 O -0.986 6.986 14 O -0.971 6.971 15 N -0.865 5.865 16 C 0.059 3.941 17 H 0.155 0.845 18 C -0.147 4.147 19 C 0.134 3.866 20 O -0.320 6.320 21 C -0.060 4.060 22 C -0.071 4.071 23 O -0.308 6.308 24 C 0.303 3.697 25 O -0.410 6.410 26 O -0.316 6.316 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.264 0.736 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.151 0.849 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -7.760 -19.334 11.153 23.630 hybrid contribution 0.723 1.472 -0.264 1.661 sum -7.037 -17.862 10.888 22.071 Atomic orbital electron populations 1.21624 0.77958 1.04216 1.02169 1.57506 1.15778 1.22093 1.89039 1.18470 0.89973 0.79966 0.95721 1.21832 1.31845 1.10595 0.94859 0.92397 1.25831 0.94627 0.96870 1.01693 1.70038 1.33318 1.19567 1.33595 0.85577 0.78819 0.77629 0.79498 1.18556 1.20253 1.20098 1.01551 0.72564 0.72641 0.73280 1.93604 1.46708 1.85732 1.72509 1.93554 1.64787 1.57984 1.80769 1.56008 1.15782 1.86805 1.27889 1.20249 0.92757 0.89933 0.91190 0.84529 1.21845 1.06027 0.89652 0.97225 1.24230 0.82999 0.89015 0.90368 1.88869 1.66888 1.17975 1.58265 1.24229 0.96997 0.86213 0.98592 1.24577 1.02372 0.81135 0.98972 1.89499 1.31364 1.23063 1.86872 1.24000 0.79838 0.88960 0.76891 1.90808 1.48462 1.44373 1.57374 1.84462 1.34636 1.47418 1.65095 0.91813 0.90662 0.89828 0.96422 0.97040 0.92391 0.73569 0.86121 0.87099 0.90648 0.88038 0.88017 0.90213 0.84879 0.70870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.89 10.64 127.77 1.36 4.25 16 2 N -1.00 -42.45 3.23 -543.23 -1.75 -44.20 16 3 C 0.28 14.97 5.10 85.63 0.44 15.40 16 4 C -0.55 -32.03 9.37 25.60 0.24 -31.79 16 5 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 6 C 0.01 0.54 5.46 84.66 0.46 1.00 16 7 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 8 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 S 2.79 110.77 6.03 -56.49 -0.34 110.43 16 13 O -1.00 -49.26 17.28 -128.00 -2.21 -51.48 16 14 O -0.99 -38.29 16.04 -128.00 -2.05 -40.34 16 15 N -1.10 -33.35 4.49 -172.52 -0.77 -34.12 16 16 C 0.17 4.18 2.80 44.25 0.12 4.30 16 17 H 0.14 3.30 7.22 -2.39 -0.02 3.29 16 18 C -0.11 -2.10 4.93 30.60 0.15 -1.95 16 19 C 0.23 4.84 3.82 71.98 0.27 5.11 16 20 O -0.40 -7.85 11.26 -125.98 -1.42 -9.27 16 21 C 0.02 0.20 8.07 72.48 0.59 0.78 16 22 C 0.01 0.08 7.83 72.48 0.57 0.64 16 23 O -0.39 -8.45 11.16 -125.98 -1.41 -9.86 16 24 C 0.46 12.17 7.55 71.24 0.54 12.71 16 25 O -0.52 -18.03 17.35 21.97 0.38 -17.65 16 26 O -0.50 -9.50 13.42 -51.43 -0.69 -10.19 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 29 H 0.08 2.57 7.00 -2.39 -0.02 2.56 16 30 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.01 0.68 7.70 -2.39 -0.02 0.66 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.43 11.67 8.85 -96.74 -0.86 10.82 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.69 7.62 -2.39 -0.02 1.68 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.43 4.95 9.10 -74.05 -0.67 4.28 16 Total: -1.00 -82.02 366.80 -3.67 -85.69 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.45 Total: 19.08 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.74 Total: 10.47 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -2.24 Total: -134.32 kcal Atomic # 8 Polarization: -131.39 SS G_CDS: -7.40 Total: -138.79 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 110.77 SS G_CDS: -0.34 Total: 110.43 kcal Total: -82.02 -3.67 -85.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.018 kcal (2) G-P(sol) polarization free energy of solvation -82.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds