Wall clock time and date at job start Tue Mar 31 2020 21:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39033 * 120.00117 * 2 1 4 4 N 1.32353 * 119.63835 * 0.22165 * 3 2 1 5 5 C 1.31890 * 121.96416 * 180.26538 * 4 3 2 6 6 C 1.37984 * 121.00177 * 359.77665 * 5 4 3 7 7 C 1.40044 * 119.17129 * 359.97438 * 6 5 4 8 8 C 1.48035 * 120.89107 * 179.97438 * 7 6 5 9 9 O 1.21427 * 119.99770 * 142.09766 * 8 7 6 10 10 N 1.34776 * 120.00143 * 322.08721 * 8 7 6 11 11 C 1.33353 * 119.99851 * 5.16090 * 10 8 7 12 12 H 1.08004 * 119.99973 * 333.66009 * 11 10 8 13 13 C 1.46781 * 120.00190 * 153.66267 * 11 10 8 14 14 N 1.29321 * 119.99507 * 331.84292 * 13 11 10 15 15 Si 1.86792 * 120.00180 * 151.84818 * 13 11 10 16 16 H 1.48503 * 109.47497 * 89.99746 * 15 13 11 17 17 H 1.48501 * 109.47120 * 210.00159 * 15 13 11 18 18 H 1.48508 * 109.46976 * 329.99786 * 15 13 11 19 19 C 1.46501 * 120.00430 * 185.15101 * 10 8 7 20 20 C 1.53005 * 109.46605 * 84.15605 * 19 10 8 21 21 C 1.50699 * 109.46864 * 180.02562 * 20 19 10 22 22 O 1.20825 * 119.99946 * 0.02562 * 21 20 19 23 23 O 1.34228 * 120.00169 * 180.02562 * 21 20 19 24 24 C 1.39059 * 119.63908 * 180.02562 * 3 2 1 25 25 N 1.48013 * 120.54075 * 359.97438 * 24 3 2 26 26 O 1.31704 * 120.00080 * 269.72135 * 25 24 3 27 27 O 1.31699 * 120.00044 * 89.44945 * 25 24 3 28 28 H 1.08997 * 109.47287 * 300.00109 * 1 2 3 29 29 H 1.09009 * 109.47113 * 59.99807 * 1 2 3 30 30 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99714 * 180.02562 * 2 1 3 32 32 H 1.07998 * 119.49563 * 179.74926 * 5 4 3 33 33 H 1.08000 * 120.41279 * 179.97438 * 6 5 4 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47675 * 204.16261 * 19 10 8 36 36 H 1.09000 * 109.47114 * 324.16243 * 19 10 8 37 37 H 1.08994 * 109.47639 * 300.00677 * 20 19 10 38 38 H 1.09000 * 109.46864 * 60.00484 * 20 19 10 39 39 H 0.96699 * 117.00535 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4912 2.3461 0.0045 5 6 2.1038 3.5141 -0.0005 6 6 3.4813 3.5942 -0.0061 7 6 4.2337 2.4130 -0.0058 8 6 5.7135 2.4545 -0.0122 9 8 6.3463 1.6440 0.6335 10 7 6.3582 3.3918 -0.7349 11 6 5.6658 4.3442 -1.3610 12 1 4.6441 4.1612 -1.6594 13 6 6.2922 5.6410 -1.6445 14 7 7.2345 6.0851 -0.8782 15 14 5.7282 6.6498 -3.1119 16 1 4.6252 7.5534 -2.6970 17 1 6.8644 7.4578 -3.6232 18 1 5.2466 5.7400 -4.1823 19 6 7.8197 3.3646 -0.8325 20 6 8.2386 2.4020 -1.9456 21 6 9.7420 2.3736 -2.0456 22 8 10.4098 3.0530 -1.3026 23 8 10.3391 1.5934 -2.9602 24 6 3.5507 1.1953 -0.0005 25 7 4.2948 -0.0843 -0.0005 26 8 4.6311 -0.6505 1.1400 27 8 4.6159 -0.6593 -1.1410 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9499 -0.8400 -0.0004 32 1 1.5183 4.4216 -0.0007 33 1 3.9730 4.5557 -0.0105 34 1 7.6483 6.9422 -1.0653 35 1 8.1874 4.3652 -1.0599 36 1 8.2410 3.0294 0.1153 37 1 7.8709 1.4015 -1.7183 38 1 7.8173 2.7372 -2.8934 39 1 11.3056 1.6088 -2.9867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598682092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:13 Heat of formation + Delta-G solvation = -30.096207 kcal Electronic energy + Delta-G solvation = -30150.415837 eV Core-core repulsion = 25678.253455 eV Total energy + Delta-G solvation = -4472.162382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.76875 -39.92581 -38.76315 -38.04889 -35.96644 -35.77837 -35.35541 -33.80274 -32.68827 -32.60175 -31.26226 -30.26144 -26.67093 -26.46461 -25.34119 -24.67663 -22.68478 -22.44952 -20.73657 -19.72164 -18.74018 -17.99864 -17.84205 -17.68568 -17.48426 -16.46480 -16.21870 -16.13947 -15.57350 -14.99880 -14.93074 -14.79580 -14.69245 -14.32507 -14.16101 -13.79438 -13.22060 -13.09110 -12.93877 -12.66936 -12.53176 -12.25959 -12.16702 -11.65262 -11.38838 -11.22464 -11.11384 -10.92604 -10.73156 -10.69048 -10.44642 -10.30652 -10.20620 -10.12733 -9.83123 -9.80051 -9.58493 -8.85776 -8.33307 -7.91469 -7.03579 -4.22680 0.28655 0.73425 1.28415 1.61382 2.56959 2.76359 2.88127 2.92974 2.96289 3.24323 3.40903 3.68763 3.86962 4.10255 4.43191 4.52791 4.77583 5.06529 5.14913 5.17172 5.42408 5.43682 5.53369 5.64139 5.68997 5.82228 6.00534 6.04251 6.14545 6.36153 6.49082 6.55995 6.71208 6.76096 6.90948 7.02132 7.05837 7.17284 7.19450 7.84708 7.95429 8.21008 8.39688 9.00889 9.51225 9.89285 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004904 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.052088 B = 5707.728886 C = 7566.287072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.730 5.730 3 C 0.442 3.558 4 N -0.527 5.527 5 C 0.161 3.839 6 C -0.182 4.182 7 C 0.047 3.953 8 C 0.444 3.556 9 O -0.590 6.590 10 N -0.372 5.372 11 C -0.396 4.396 12 H 0.116 0.884 13 C 0.059 3.941 14 N -0.787 5.787 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.258 1.258 19 C 0.111 3.889 20 C -0.127 4.127 21 C 0.486 3.514 22 O -0.514 6.514 23 O -0.521 6.521 24 C -0.096 4.096 25 N -0.007 5.007 26 O -0.123 6.123 27 O -0.171 6.171 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.289 0.711 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 -1.823 -3.619 8.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.363 5.363 3 C 0.204 3.796 4 N -0.247 5.247 5 C 0.005 3.995 6 C -0.205 4.205 7 C 0.035 3.965 8 C 0.235 3.765 9 O -0.478 6.478 10 N -0.083 5.083 11 C -0.524 4.524 12 H 0.133 0.867 13 C -0.160 4.160 14 N -0.416 5.416 15 Si 0.738 3.262 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.182 1.182 19 C -0.012 4.012 20 C -0.165 4.165 21 C 0.328 3.672 22 O -0.402 6.402 23 O -0.333 6.333 24 C -0.187 4.187 25 N 0.487 4.513 26 O -0.335 6.335 27 O -0.368 6.368 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.243 0.757 32 H 0.190 0.810 33 H 0.200 0.800 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.883 -1.183 -3.121 9.489 hybrid contribution 1.765 -0.076 -0.755 1.921 sum -7.118 -1.258 -3.876 8.202 Atomic orbital electron populations 1.21487 0.78121 1.01877 1.02411 1.44394 1.07449 1.03919 1.80556 1.17590 0.83637 0.88241 0.90144 1.67323 1.38203 0.96679 1.22538 1.22771 0.92415 0.94321 0.89959 1.22787 0.93771 1.00187 1.03765 1.20111 0.96367 0.89698 0.90334 1.17754 0.85390 0.88238 0.85158 1.90742 1.66348 1.44686 1.46067 1.42351 1.05494 1.22449 1.38002 1.20775 1.00502 0.91626 1.39529 0.86719 1.26986 0.95211 0.96475 0.97370 1.68924 1.21250 1.18776 1.32634 0.86120 0.79312 0.79379 0.81339 1.19121 1.20005 1.18216 1.21536 0.80924 1.01879 0.96845 1.21759 0.86712 1.04339 1.03737 1.23564 0.92208 0.75174 0.76204 1.90707 1.66647 1.41046 1.41781 1.84583 1.27885 1.64100 1.56706 1.20513 0.89857 0.82548 1.25800 1.49959 0.97400 1.01848 1.02048 1.96240 1.55887 1.65951 1.15395 1.96233 1.58877 1.66314 1.15421 0.92102 0.92102 0.90913 0.75686 0.80976 0.80043 0.89813 0.85548 0.90721 0.87965 0.87590 0.73913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.07 10.72 59.85 0.64 1.71 16 2 N -0.73 -10.33 5.85 -67.23 -0.39 -10.72 16 3 C 0.44 7.56 7.48 -155.06 -1.16 6.40 16 4 N -0.53 -8.20 9.53 -12.49 -0.12 -8.32 16 5 C 0.16 2.30 11.16 -17.62 -0.20 2.10 16 6 C -0.18 -3.14 7.64 -39.00 -0.30 -3.44 16 7 C 0.05 1.00 5.39 -104.69 -0.56 0.43 16 8 C 0.44 10.74 7.16 -12.24 -0.09 10.66 16 9 O -0.59 -16.06 15.31 3.92 0.06 -16.00 16 10 N -0.37 -8.61 2.53 -114.26 -0.29 -8.90 16 11 C -0.40 -8.59 7.34 -13.44 -0.10 -8.69 16 12 H 0.12 2.36 5.43 -52.48 -0.28 2.07 16 13 C 0.06 1.23 5.00 -15.16 -0.08 1.16 16 14 N -0.79 -17.48 11.26 56.00 0.63 -16.85 16 15 Si 0.92 16.00 29.71 -169.99 -5.05 10.95 16 16 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 17 H -0.28 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 19 C 0.11 2.52 4.27 -4.04 -0.02 2.51 16 20 C -0.13 -2.48 6.09 -27.88 -0.17 -2.65 16 21 C 0.49 8.82 8.33 36.01 0.30 9.12 16 22 O -0.51 -10.68 16.74 -18.75 -0.31 -10.99 16 23 O -0.52 -7.45 13.42 -39.25 -0.53 -7.98 16 24 C -0.10 -1.94 6.31 -79.13 -0.50 -2.44 16 25 N -0.01 -0.16 2.83 34.36 0.10 -0.06 16 26 O -0.12 -2.79 19.55 -33.80 -0.66 -3.45 16 27 O -0.17 -3.77 19.97 -31.57 -0.63 -4.40 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.41 5.71 8.06 -40.82 -0.33 5.38 16 32 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.18 3.16 5.98 -52.49 -0.31 2.85 16 34 H 0.29 5.92 8.26 -40.82 -0.34 5.58 16 35 H 0.13 2.97 4.96 -51.93 -0.26 2.72 16 36 H 0.07 1.85 7.49 -51.93 -0.39 1.46 16 37 H 0.10 2.09 8.14 -51.93 -0.42 1.66 16 38 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 39 H 0.40 3.75 9.10 45.56 0.41 4.17 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -31.17 352.94 -6.93 -38.10 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -2.83 Total: 16.42 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -2.22 Total: 16.87 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.07 Total: -44.84 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -2.07 Total: -42.82 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -5.05 Total: 10.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.17 -6.93 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598682092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.008 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds