Wall clock time and date at job start Tue Mar 31 2020 21:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39033 * 120.00117 * 2 1 4 4 N 1.32353 * 119.63835 * 0.22165 * 3 2 1 5 5 C 1.31890 * 121.96416 * 180.26538 * 4 3 2 6 6 C 1.37984 * 121.00177 * 359.77665 * 5 4 3 7 7 C 1.40044 * 119.17129 * 359.97438 * 6 5 4 8 8 C 1.48035 * 120.89107 * 179.97438 * 7 6 5 9 9 O 1.21427 * 119.99770 * 142.09766 * 8 7 6 10 10 N 1.34776 * 120.00143 * 322.08721 * 8 7 6 11 11 C 1.33353 * 119.99851 * 5.16090 * 10 8 7 12 12 H 1.08004 * 119.99973 * 333.66009 * 11 10 8 13 13 C 1.46781 * 120.00190 * 153.66267 * 11 10 8 14 14 N 1.29321 * 119.99507 * 331.84292 * 13 11 10 15 15 Si 1.86792 * 120.00180 * 151.84818 * 13 11 10 16 16 H 1.48503 * 109.47497 * 89.99746 * 15 13 11 17 17 H 1.48501 * 109.47120 * 210.00159 * 15 13 11 18 18 H 1.48508 * 109.46976 * 329.99786 * 15 13 11 19 19 C 1.46501 * 120.00430 * 185.15101 * 10 8 7 20 20 C 1.53005 * 109.46605 * 84.15605 * 19 10 8 21 21 C 1.50699 * 109.46864 * 180.02562 * 20 19 10 22 22 O 1.20825 * 119.99946 * 0.02562 * 21 20 19 23 23 O 1.34228 * 120.00169 * 180.02562 * 21 20 19 24 24 C 1.39059 * 119.63908 * 180.02562 * 3 2 1 25 25 N 1.48013 * 120.54075 * 359.97438 * 24 3 2 26 26 O 1.31704 * 120.00080 * 269.72135 * 25 24 3 27 27 O 1.31699 * 120.00044 * 89.44945 * 25 24 3 28 28 H 1.08997 * 109.47287 * 300.00109 * 1 2 3 29 29 H 1.09009 * 109.47113 * 59.99807 * 1 2 3 30 30 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99714 * 180.02562 * 2 1 3 32 32 H 1.07998 * 119.49563 * 179.74926 * 5 4 3 33 33 H 1.08000 * 120.41279 * 179.97438 * 6 5 4 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47675 * 204.16261 * 19 10 8 36 36 H 1.09000 * 109.47114 * 324.16243 * 19 10 8 37 37 H 1.08994 * 109.47639 * 300.00677 * 20 19 10 38 38 H 1.09000 * 109.46864 * 60.00484 * 20 19 10 39 39 H 0.96699 * 117.00535 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4912 2.3461 0.0045 5 6 2.1038 3.5141 -0.0005 6 6 3.4813 3.5942 -0.0061 7 6 4.2337 2.4130 -0.0058 8 6 5.7135 2.4545 -0.0122 9 8 6.3463 1.6440 0.6335 10 7 6.3582 3.3918 -0.7349 11 6 5.6658 4.3442 -1.3610 12 1 4.6441 4.1612 -1.6594 13 6 6.2922 5.6410 -1.6445 14 7 7.2345 6.0851 -0.8782 15 14 5.7282 6.6498 -3.1119 16 1 4.6252 7.5534 -2.6970 17 1 6.8644 7.4578 -3.6232 18 1 5.2466 5.7400 -4.1823 19 6 7.8197 3.3646 -0.8325 20 6 8.2386 2.4020 -1.9456 21 6 9.7420 2.3736 -2.0456 22 8 10.4098 3.0530 -1.3026 23 8 10.3391 1.5934 -2.9602 24 6 3.5507 1.1953 -0.0005 25 7 4.2948 -0.0843 -0.0005 26 8 4.6311 -0.6505 1.1400 27 8 4.6159 -0.6593 -1.1410 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9499 -0.8400 -0.0004 32 1 1.5183 4.4216 -0.0007 33 1 3.9730 4.5557 -0.0105 34 1 7.6483 6.9422 -1.0653 35 1 8.1874 4.3652 -1.0599 36 1 8.2410 3.0294 0.1153 37 1 7.8709 1.4015 -1.7183 38 1 7.8173 2.7372 -2.8934 39 1 11.3056 1.6088 -2.9867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598682092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:12 Heat of formation + Delta-G solvation = -51.824109 kcal Electronic energy + Delta-G solvation = -30151.358030 eV Core-core repulsion = 25678.253455 eV Total energy + Delta-G solvation = -4473.104575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21008 -41.40500 -40.40467 -39.66244 -37.40566 -37.04828 -37.00247 -35.51699 -34.32371 -34.14461 -32.79646 -31.63930 -28.15340 -27.65991 -26.99391 -26.23318 -24.13757 -23.84100 -22.22820 -21.37272 -20.26173 -19.46153 -19.36474 -19.30553 -18.91604 -17.91361 -17.74117 -17.70604 -17.07298 -16.43763 -16.39232 -16.24677 -16.07101 -15.73809 -15.65375 -15.23528 -14.71334 -14.52287 -14.28940 -14.12875 -13.87342 -13.82430 -13.26475 -13.06650 -12.92261 -12.68058 -12.65473 -12.63549 -12.35521 -12.14592 -12.09798 -11.88374 -11.77438 -11.50104 -11.33651 -11.26867 -11.23097 -10.56917 -10.05619 -9.15202 -8.65914 -5.94579 -1.43388 -0.68717 -0.07526 0.04444 1.08245 1.35198 1.49953 1.59639 1.66836 1.80881 1.92739 2.23947 2.44171 2.58119 2.81600 3.24071 3.43323 3.67465 3.77340 3.81869 3.96856 4.13730 4.31126 4.36662 4.46972 4.56883 4.60916 4.64019 4.77390 4.89617 4.99047 5.07782 5.19562 5.27239 5.43895 5.46223 5.50724 5.73965 5.83670 6.17956 6.67055 6.70615 6.91794 7.25880 7.79655 8.29313 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004904 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.052088 B = 5707.728886 C = 7566.287072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.724 5.724 3 C 0.446 3.554 4 N -0.515 5.515 5 C 0.195 3.805 6 C -0.185 4.185 7 C 0.024 3.976 8 C 0.416 3.584 9 O -0.641 6.641 10 N -0.370 5.370 11 C -0.415 4.415 12 H 0.128 0.872 13 C 0.033 3.967 14 N -0.820 5.820 15 Si 0.984 3.016 16 H -0.250 1.250 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.115 3.885 20 C -0.120 4.120 21 C 0.499 3.501 22 O -0.545 6.545 23 O -0.505 6.505 24 C -0.130 4.130 25 N 0.001 4.999 26 O -0.158 6.158 27 O -0.174 6.174 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.230 0.770 33 H 0.181 0.819 34 H 0.296 0.704 35 H 0.120 0.880 36 H 0.039 0.961 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -0.434 -5.544 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.355 5.355 3 C 0.207 3.793 4 N -0.235 5.235 5 C 0.038 3.962 6 C -0.209 4.209 7 C 0.012 3.988 8 C 0.209 3.791 9 O -0.533 6.533 10 N -0.079 5.079 11 C -0.543 4.543 12 H 0.146 0.854 13 C -0.184 4.184 14 N -0.450 5.450 15 Si 0.804 3.196 16 H -0.174 1.174 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.009 4.009 20 C -0.158 4.158 21 C 0.342 3.658 22 O -0.435 6.435 23 O -0.319 6.319 24 C -0.221 4.221 25 N 0.494 4.506 26 O -0.364 6.364 27 O -0.376 6.376 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.242 0.758 32 H 0.246 0.754 33 H 0.198 0.802 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.710 0.151 -5.016 12.740 hybrid contribution 2.571 -0.473 -0.194 2.621 sum -9.140 -0.321 -5.210 10.525 Atomic orbital electron populations 1.21791 0.75403 1.04246 1.02835 1.44707 1.09097 1.02953 1.78737 1.17834 0.82569 0.89749 0.89135 1.67577 1.37241 0.96493 1.22228 1.23608 0.91361 0.95636 0.85628 1.22818 0.94975 0.98653 1.04426 1.20037 0.94761 0.91423 0.92560 1.18323 0.87004 0.88576 0.85196 1.90677 1.67828 1.46603 1.48196 1.42538 1.05561 1.22606 1.37227 1.21172 1.01404 0.91866 1.39811 0.85444 1.27834 0.94757 0.96869 0.98945 1.68976 1.22283 1.19549 1.34148 0.85096 0.79034 0.77825 0.77659 1.17441 1.20340 1.18082 1.21377 0.81210 1.02024 0.96252 1.21546 0.88340 1.02741 1.03186 1.23103 0.91509 0.74998 0.76215 1.90704 1.67081 1.42578 1.43146 1.84501 1.30209 1.62417 1.54773 1.20816 0.90988 0.81277 1.29055 1.50203 0.96658 1.02266 1.01472 1.96224 1.57467 1.67026 1.15675 1.96194 1.58821 1.66882 1.15660 0.91628 0.91481 0.87807 0.75840 0.75428 0.80187 0.89178 0.86243 0.94209 0.89217 0.85942 0.70893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.72 127.77 1.37 3.07 16 2 N -0.72 -19.16 5.85 -366.61 -2.15 -21.31 16 3 C 0.45 14.56 7.48 133.05 0.99 15.56 16 4 N -0.52 -14.27 9.53 -193.42 -1.84 -16.12 16 5 C 0.20 4.81 11.16 84.62 0.94 5.76 16 6 C -0.19 -6.15 7.64 22.65 0.17 -5.98 16 7 C 0.02 1.04 5.39 -19.91 -0.11 0.93 16 8 C 0.42 21.20 7.16 86.84 0.62 21.82 16 9 O -0.64 -37.41 15.31 -2.04 -0.03 -37.44 16 10 N -0.37 -17.81 2.53 -633.73 -1.60 -19.41 16 11 C -0.42 -18.01 7.34 86.70 0.64 -17.37 16 12 H 0.13 5.11 5.43 -2.91 -0.02 5.10 16 13 C 0.03 1.35 5.00 87.30 0.44 1.78 16 14 N -0.82 -36.65 11.26 23.26 0.26 -36.39 16 15 Si 0.98 31.16 29.71 68.60 2.04 33.20 16 16 H -0.25 -7.31 7.11 99.48 0.71 -6.61 16 17 H -0.28 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.26 -8.09 7.11 99.48 0.71 -7.38 16 19 C 0.11 5.49 4.27 86.38 0.37 5.86 16 20 C -0.12 -4.83 6.09 29.85 0.18 -4.65 16 21 C 0.50 18.26 8.33 71.24 0.59 18.85 16 22 O -0.54 -23.16 16.74 21.97 0.37 -22.79 16 23 O -0.51 -13.78 13.42 -51.40 -0.69 -14.47 16 24 C -0.13 -5.33 6.31 36.91 0.23 -5.09 16 25 N 0.00 0.05 2.83 -45.21 -0.13 -0.08 16 26 O -0.16 -7.56 19.55 5.64 0.11 -7.45 16 27 O -0.17 -7.93 19.97 3.52 0.07 -7.86 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.41 11.02 8.06 -92.71 -0.75 10.27 16 32 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.18 6.05 5.98 -2.91 -0.02 6.03 16 34 H 0.30 12.07 8.26 -92.71 -0.77 11.31 16 35 H 0.12 5.86 4.96 -2.39 -0.01 5.85 16 36 H 0.04 2.13 7.49 -2.39 -0.02 2.11 16 37 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 38 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 39 H 0.43 7.11 9.10 -74.06 -0.67 6.44 16 Total: -1.00 -72.61 352.94 2.60 -70.01 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.25 Total: 39.56 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 6.45 Total: 40.54 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -5.46 Total: -93.30 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -0.17 Total: -90.02 kcal Atomic # 14 Polarization: 31.16 SS G_CDS: 2.04 Total: 33.20 kcal Total: -72.61 2.60 -70.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598682092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.185 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds