Wall clock time and date at job start Tue Mar 31 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99915 * 2 1 4 4 C 1.53003 * 109.46771 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47556 * 65.00164 * 4 3 2 6 6 C 1.33336 * 119.99906 * 280.36406 * 5 4 3 7 7 H 1.08008 * 119.99722 * 315.06585 * 6 5 4 8 8 C 1.46776 * 120.00222 * 135.07054 * 6 5 4 9 9 N 1.29322 * 120.00035 * 340.05434 * 8 6 5 10 10 Si 1.86801 * 120.00126 * 160.06098 * 8 6 5 11 11 H 1.48492 * 109.47417 * 94.98676 * 10 8 6 12 12 H 1.48503 * 109.47062 * 214.99021 * 10 8 6 13 13 H 1.48499 * 109.47016 * 334.98664 * 10 8 6 14 14 C 1.34775 * 120.00044 * 100.35542 * 5 4 3 15 15 O 1.21473 * 119.99668 * 186.81309 * 14 5 4 16 16 C 1.47706 * 120.00179 * 6.81906 * 14 5 4 17 17 C 1.39411 * 120.08307 * 145.27882 * 16 14 5 18 18 C 1.39322 * 119.69665 * 179.97438 * 17 16 14 19 19 C 1.47748 * 120.07250 * 180.02562 * 18 17 16 20 20 O 1.21464 * 120.00574 * 0.02562 * 19 18 17 21 21 O 1.34710 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.39769 * 119.85025 * 0.27977 * 18 17 16 23 23 C 1.38071 * 120.15523 * 359.41992 * 22 18 17 24 24 N 1.48012 * 119.84260 * 180.30304 * 23 22 18 25 25 O 1.31703 * 119.99867 * 185.71980 * 24 23 22 26 26 O 1.31695 * 120.00477 * 5.71902 * 24 23 22 27 27 C 1.38077 * 120.30968 * 0.60555 * 23 22 18 28 28 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46802 * 299.99626 * 1 2 3 30 30 H 1.09001 * 109.46924 * 59.99775 * 1 2 3 31 31 H 1.08997 * 109.47245 * 60.00415 * 3 2 1 32 32 H 1.08994 * 109.47179 * 299.99864 * 3 2 1 33 33 H 1.09005 * 109.47303 * 304.99610 * 4 3 2 34 34 H 1.08997 * 109.46827 * 185.00235 * 4 3 2 35 35 H 0.97002 * 119.99880 * 185.04224 * 9 8 6 36 36 H 1.08003 * 120.14987 * 0.02562 * 17 16 14 37 37 H 0.96700 * 117.00321 * 179.97438 * 21 19 18 38 38 H 1.08002 * 119.92282 * 179.70374 * 22 18 17 39 39 H 1.07993 * 119.92993 * 179.70436 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 3.8974 -0.7579 -1.4053 7 1 4.2230 -1.4134 -0.6110 8 6 3.3688 -1.3227 -2.6526 9 7 2.6360 -0.5960 -3.4320 10 14 3.7542 -3.0912 -3.1143 11 1 2.6487 -3.9732 -2.6617 12 1 3.9004 -3.1974 -4.5883 13 1 5.0202 -3.5089 -2.4600 14 6 4.4599 1.3304 -2.2504 15 8 4.7087 0.8343 -3.3309 16 6 4.6879 2.7730 -2.0299 17 6 5.7596 3.4138 -2.6498 18 6 5.9669 4.7749 -2.4366 19 6 7.0997 5.4626 -3.0899 20 8 7.8513 4.8414 -3.8142 21 8 7.2990 6.7786 -2.8823 22 6 5.1039 5.4873 -1.5991 23 6 4.0408 4.8478 -0.9931 24 7 3.1274 5.6103 -0.1128 25 8 2.1811 4.9836 0.5553 26 8 3.2607 6.9154 0.0024 27 6 3.8296 3.4990 -1.1994 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1764 0.0890 35 1 2.2265 -0.9893 -4.2184 36 1 6.4256 2.8578 -3.2931 37 1 8.0534 7.1845 -3.3309 38 1 5.2663 6.5414 -1.4292 39 1 2.9989 3.0039 -0.7185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599231336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:53 Heat of formation + Delta-G solvation = -64.366074 kcal Electronic energy + Delta-G solvation = -30077.212443 eV Core-core repulsion = 25571.271257 eV Total energy + Delta-G solvation = -4505.941186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.97457 -39.94567 -38.90022 -37.66496 -36.97210 -36.33170 -34.64643 -34.39673 -32.84430 -31.96933 -31.39507 -29.29422 -26.71293 -25.96287 -25.25947 -24.99649 -23.09895 -22.10161 -21.40304 -20.15984 -18.44089 -18.36855 -17.95107 -17.05011 -16.93353 -16.64592 -16.13549 -15.89133 -15.77346 -15.53015 -15.31777 -15.22665 -14.62058 -14.45179 -14.03414 -13.67135 -13.42506 -12.92693 -12.87155 -12.63627 -12.13535 -11.86038 -11.79531 -11.65510 -11.39993 -11.35881 -11.20785 -11.11374 -11.03241 -10.93694 -10.86589 -10.67261 -10.58779 -10.28821 -9.66556 -9.28679 -9.12141 -8.98302 -8.42426 -7.57168 -6.48292 -3.85786 -0.67197 0.22780 0.99475 1.08121 2.13695 2.64307 3.10431 3.18364 3.24792 3.26401 3.99348 4.15790 4.22422 4.25072 4.40489 4.61750 4.65916 4.84754 4.88937 4.90883 5.19100 5.39052 5.45210 5.60016 5.62062 5.69266 5.75678 5.78699 5.82648 5.91875 5.94798 6.05592 6.11696 6.18923 6.30772 6.38438 6.76650 7.22994 7.60829 7.77032 7.90870 8.56718 8.91609 9.26076 10.01377 10.53319 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.004745 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.138038 B = 5899.736541 C = 8101.846458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.051 3.949 4 C 0.071 3.929 5 N -0.394 5.394 6 C -0.340 4.340 7 H 0.092 0.908 8 C 0.083 3.917 9 N -0.768 5.768 10 Si 0.918 3.082 11 H -0.278 1.278 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.459 3.541 15 O -0.529 6.529 16 C -0.090 4.090 17 C 0.028 3.972 18 C -0.128 4.128 19 C 0.535 3.465 20 O -0.500 6.500 21 O -0.510 6.510 22 C -0.021 4.021 23 C -0.015 4.015 24 N -0.013 5.013 25 O -0.170 6.170 26 O -0.174 6.174 27 C -0.046 4.046 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.275 0.725 36 H 0.163 0.837 37 H 0.418 0.582 38 H 0.165 0.835 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 9.321 4.618 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C -0.027 4.027 4 C -0.052 4.052 5 N -0.109 5.109 6 C -0.468 4.468 7 H 0.109 0.891 8 C -0.139 4.139 9 N -0.395 5.395 10 Si 0.743 3.257 11 H -0.204 1.204 12 H -0.207 1.207 13 H -0.188 1.188 14 C 0.250 3.750 15 O -0.409 6.409 16 C -0.096 4.096 17 C 0.009 3.991 18 C -0.130 4.130 19 C 0.379 3.621 20 O -0.388 6.388 21 O -0.322 6.322 22 C -0.042 4.042 23 C -0.101 4.101 24 N 0.467 4.533 25 O -0.364 6.364 26 O -0.368 6.368 27 C -0.066 4.066 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.181 0.819 37 H 0.277 0.723 38 H 0.182 0.818 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.653 8.204 3.476 9.296 hybrid contribution -0.190 0.183 -0.242 0.358 sum 2.464 8.386 3.234 9.320 Atomic orbital electron populations 1.22637 0.82840 1.01945 0.98906 1.88148 1.17783 1.25757 1.94966 1.22855 0.94465 0.86083 0.99279 1.22356 0.92641 0.98793 0.91379 1.42128 1.49968 1.06898 1.11914 1.19895 1.44227 0.80325 1.02380 0.89067 1.26865 0.92632 0.98560 0.95809 1.68832 1.21278 1.37829 1.11586 0.86113 0.79425 0.82029 0.78103 1.20394 1.20679 1.18801 1.17539 0.86028 0.83454 0.87929 1.90643 1.54775 1.72132 1.23398 1.20719 0.94840 0.97583 0.96467 1.21757 0.93999 0.91448 0.91945 1.18736 0.97106 0.93908 1.03247 1.20430 0.83393 0.80091 0.78215 1.90946 1.45588 1.66656 1.35656 1.84544 1.53359 1.24163 1.70140 1.21162 0.90003 1.01672 0.91344 1.20110 0.95739 0.92051 1.02186 1.50420 1.00692 1.02963 0.99248 1.96282 1.24900 1.70588 1.44629 1.96256 1.78840 0.90064 1.71631 1.22357 0.99991 0.90229 0.94070 0.90326 0.95178 0.94629 0.93207 0.93549 0.90325 0.90005 0.91276 0.81941 0.72317 0.81757 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -6.86 9.68 -35.23 -0.34 -7.20 16 3 C 0.05 0.91 5.15 37.16 0.19 1.10 16 4 C 0.07 1.30 5.31 -4.04 -0.02 1.28 16 5 N -0.39 -8.94 2.47 -114.38 -0.28 -9.22 16 6 C -0.34 -8.48 8.36 -13.45 -0.11 -8.59 16 7 H 0.09 2.22 8.00 -52.48 -0.42 1.80 16 8 C 0.08 2.13 4.47 -15.16 -0.07 2.06 16 9 N -0.77 -20.50 11.79 56.00 0.66 -19.84 16 10 Si 0.92 20.06 29.68 -169.99 -5.05 15.01 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 14 C 0.46 10.68 6.86 -12.39 -0.09 10.60 16 15 O -0.53 -14.40 14.29 5.39 0.08 -14.32 16 16 C -0.09 -1.66 5.47 -105.02 -0.57 -2.24 16 17 C 0.03 0.46 9.15 -38.74 -0.35 0.11 16 18 C -0.13 -1.75 5.87 -105.03 -0.62 -2.37 16 19 C 0.54 6.69 8.27 34.62 0.29 6.97 16 20 O -0.50 -7.65 17.13 -19.24 -0.33 -7.98 16 21 O -0.51 -4.43 12.67 -40.52 -0.51 -4.94 16 22 C -0.02 -0.28 9.14 -39.07 -0.36 -0.63 16 23 C -0.01 -0.22 6.86 -80.07 -0.55 -0.77 16 24 N -0.01 -0.21 4.98 33.90 0.17 -0.04 16 25 O -0.17 -2.83 19.15 -31.57 -0.60 -3.43 16 26 O -0.17 -2.77 19.15 -31.57 -0.60 -3.38 16 27 C -0.05 -0.76 6.93 -39.07 -0.27 -1.03 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.88 7.09 -51.93 -0.37 0.51 16 33 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 34 H 0.08 1.32 4.14 -51.93 -0.22 1.10 16 35 H 0.28 6.96 8.27 -40.82 -0.34 6.62 16 36 H 0.16 2.78 7.58 -52.48 -0.40 2.38 16 37 H 0.42 1.62 9.11 45.56 0.42 2.03 16 38 H 0.16 1.84 7.11 -52.49 -0.37 1.47 16 39 H 0.18 2.92 2.62 -52.49 -0.14 2.78 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -32.08 349.78 -5.71 -37.78 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -2.74 Total: 4.16 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.42 Total: 8.12 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 0.55 Total: -29.10 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.32 Total: -41.25 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.05 Total: 15.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.08 -5.71 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599231336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.583 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds