Wall clock time and date at job start Tue Mar 31 2020 20:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99915 * 2 1 4 4 C 1.53003 * 109.46771 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47556 * 65.00164 * 4 3 2 6 6 C 1.33336 * 119.99906 * 280.36406 * 5 4 3 7 7 H 1.08008 * 119.99722 * 315.06585 * 6 5 4 8 8 C 1.46776 * 120.00222 * 135.07054 * 6 5 4 9 9 N 1.29322 * 120.00035 * 340.05434 * 8 6 5 10 10 Si 1.86801 * 120.00126 * 160.06098 * 8 6 5 11 11 H 1.48492 * 109.47417 * 94.98676 * 10 8 6 12 12 H 1.48503 * 109.47062 * 214.99021 * 10 8 6 13 13 H 1.48499 * 109.47016 * 334.98664 * 10 8 6 14 14 C 1.34775 * 120.00044 * 100.35542 * 5 4 3 15 15 O 1.21473 * 119.99668 * 186.81309 * 14 5 4 16 16 C 1.47706 * 120.00179 * 6.81906 * 14 5 4 17 17 C 1.39411 * 120.08307 * 145.27882 * 16 14 5 18 18 C 1.39322 * 119.69665 * 179.97438 * 17 16 14 19 19 C 1.47748 * 120.07250 * 180.02562 * 18 17 16 20 20 O 1.21464 * 120.00574 * 0.02562 * 19 18 17 21 21 O 1.34710 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.39769 * 119.85025 * 0.27977 * 18 17 16 23 23 C 1.38071 * 120.15523 * 359.41992 * 22 18 17 24 24 N 1.48012 * 119.84260 * 180.30304 * 23 22 18 25 25 O 1.31703 * 119.99867 * 185.71980 * 24 23 22 26 26 O 1.31695 * 120.00477 * 5.71902 * 24 23 22 27 27 C 1.38077 * 120.30968 * 0.60555 * 23 22 18 28 28 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46802 * 299.99626 * 1 2 3 30 30 H 1.09001 * 109.46924 * 59.99775 * 1 2 3 31 31 H 1.08997 * 109.47245 * 60.00415 * 3 2 1 32 32 H 1.08994 * 109.47179 * 299.99864 * 3 2 1 33 33 H 1.09005 * 109.47303 * 304.99610 * 4 3 2 34 34 H 1.08997 * 109.46827 * 185.00235 * 4 3 2 35 35 H 0.97002 * 119.99880 * 185.04224 * 9 8 6 36 36 H 1.08003 * 120.14987 * 0.02562 * 17 16 14 37 37 H 0.96700 * 117.00321 * 179.97438 * 21 19 18 38 38 H 1.08002 * 119.92282 * 179.70374 * 22 18 17 39 39 H 1.07993 * 119.92993 * 179.70436 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 3.8974 -0.7579 -1.4053 7 1 4.2230 -1.4134 -0.6110 8 6 3.3688 -1.3227 -2.6526 9 7 2.6360 -0.5960 -3.4320 10 14 3.7542 -3.0912 -3.1143 11 1 2.6487 -3.9732 -2.6617 12 1 3.9004 -3.1974 -4.5883 13 1 5.0202 -3.5089 -2.4600 14 6 4.4599 1.3304 -2.2504 15 8 4.7087 0.8343 -3.3309 16 6 4.6879 2.7730 -2.0299 17 6 5.7596 3.4138 -2.6498 18 6 5.9669 4.7749 -2.4366 19 6 7.0997 5.4626 -3.0899 20 8 7.8513 4.8414 -3.8142 21 8 7.2990 6.7786 -2.8823 22 6 5.1039 5.4873 -1.5991 23 6 4.0408 4.8478 -0.9931 24 7 3.1274 5.6103 -0.1128 25 8 2.1811 4.9836 0.5553 26 8 3.2607 6.9154 0.0024 27 6 3.8296 3.4990 -1.1994 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1764 0.0890 35 1 2.2265 -0.9893 -4.2184 36 1 6.4256 2.8578 -3.2931 37 1 8.0534 7.1845 -3.3309 38 1 5.2663 6.5414 -1.4292 39 1 2.9989 3.0039 -0.7185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599231336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:52 Heat of formation + Delta-G solvation = -86.542149 kcal Electronic energy + Delta-G solvation = -30078.174070 eV Core-core repulsion = 25571.271257 eV Total energy + Delta-G solvation = -4506.902813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26119 -41.11457 -40.34104 -39.00220 -38.48412 -37.24349 -36.33906 -35.69810 -34.50919 -33.30842 -32.88842 -30.79980 -28.01473 -27.32651 -26.85980 -26.17614 -24.61843 -23.56270 -22.57312 -21.65640 -19.81392 -19.57511 -19.06865 -18.61194 -18.28513 -17.92566 -17.43023 -17.26130 -16.97818 -16.86045 -16.79878 -16.64408 -16.11906 -15.97748 -15.64845 -15.01711 -14.72268 -14.41509 -14.28151 -13.96736 -13.58499 -13.43738 -13.15144 -12.92393 -12.73485 -12.68366 -12.66982 -12.59623 -12.50847 -12.44092 -12.16164 -11.99728 -11.94569 -11.87393 -10.97870 -10.88349 -10.70153 -10.41308 -10.22332 -9.36676 -8.30426 -5.76947 -1.96053 -0.98394 -0.32323 -0.20387 0.98455 1.39717 1.45471 1.52709 1.65649 1.88831 2.30197 2.50892 2.72045 2.91790 3.10910 3.13794 3.20523 3.39196 3.47150 3.57934 3.92909 4.11325 4.15587 4.23261 4.28233 4.31604 4.39574 4.47626 4.57047 4.61988 4.62711 4.74093 4.88557 4.94094 4.95538 5.38482 5.41371 5.47534 6.09660 6.45610 6.78505 6.81768 7.15259 7.52751 8.24909 8.72964 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.004745 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.138038 B = 5899.736541 C = 8101.846458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.055 3.945 4 C 0.071 3.929 5 N -0.406 5.406 6 C -0.377 4.377 7 H 0.084 0.916 8 C 0.045 3.955 9 N -0.813 5.813 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.263 1.263 14 C 0.458 3.542 15 O -0.577 6.577 16 C -0.106 4.106 17 C 0.035 3.965 18 C -0.119 4.119 19 C 0.549 3.451 20 O -0.530 6.530 21 O -0.491 6.491 22 C 0.024 3.976 23 C -0.019 4.019 24 N -0.013 5.013 25 O -0.196 6.196 26 O -0.148 6.148 27 C -0.031 4.031 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.270 0.730 36 H 0.152 0.848 37 H 0.443 0.557 38 H 0.201 0.799 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 12.976 5.928 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.022 4.022 4 C -0.051 4.051 5 N -0.122 5.122 6 C -0.505 4.505 7 H 0.102 0.898 8 C -0.172 4.172 9 N -0.443 5.443 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.249 3.751 15 O -0.461 6.461 16 C -0.111 4.111 17 C 0.015 3.985 18 C -0.121 4.121 19 C 0.393 3.607 20 O -0.421 6.421 21 O -0.306 6.306 22 C 0.005 3.995 23 C -0.105 4.105 24 N 0.467 4.533 25 O -0.383 6.383 26 O -0.349 6.349 27 C -0.051 4.051 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.169 0.831 37 H 0.307 0.693 38 H 0.218 0.782 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.482 11.839 4.853 13.261 hybrid contribution -0.286 -0.400 -0.601 0.776 sum 3.195 11.440 4.252 12.616 Atomic orbital electron populations 1.22781 0.81155 1.02849 0.99787 1.88103 1.19818 1.26911 1.95162 1.22859 0.93948 0.85650 0.99776 1.22531 0.93313 0.99635 0.89663 1.42188 1.50506 1.06511 1.12949 1.19807 1.46600 0.81514 1.02619 0.89815 1.27519 0.92325 1.01410 0.95967 1.68919 1.23759 1.39110 1.12464 0.85357 0.79481 0.78991 0.76959 1.19097 1.21696 1.18672 1.18150 0.84520 0.85299 0.87130 1.90594 1.56238 1.73868 1.25381 1.20211 0.96651 0.95606 0.98655 1.21699 0.93006 0.92793 0.91013 1.18753 0.97728 0.92711 1.02918 1.19999 0.82280 0.81096 0.77325 1.90967 1.46473 1.67716 1.36953 1.84471 1.54614 1.21609 1.69860 1.21555 0.87353 1.02834 0.87799 1.20041 0.96361 0.91468 1.02610 1.50414 1.00714 1.02948 0.99226 1.96312 1.25643 1.70655 1.45720 1.96247 1.78128 0.89952 1.70609 1.22184 0.99144 0.91036 0.92776 0.89572 0.92218 0.95626 0.89915 0.95458 0.89633 0.87922 0.91946 0.83076 0.69312 0.78245 0.80887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.38 -15.30 9.68 -148.98 -1.44 -16.74 16 3 C 0.06 1.96 5.15 71.98 0.37 2.33 16 4 C 0.07 2.60 5.31 86.38 0.46 3.06 16 5 N -0.41 -19.19 2.47 -634.10 -1.57 -20.76 16 6 C -0.38 -19.79 8.36 86.70 0.73 -19.06 16 7 H 0.08 4.33 8.00 -2.91 -0.02 4.31 16 8 C 0.04 2.41 4.47 87.30 0.39 2.80 16 9 N -0.81 -46.13 11.79 23.25 0.27 -45.86 16 10 Si 0.97 43.38 29.68 68.60 2.04 45.41 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 14 C 0.46 22.12 6.86 86.75 0.60 22.72 16 15 O -0.58 -33.12 14.29 -3.63 -0.05 -33.17 16 16 C -0.11 -3.88 5.47 -20.12 -0.11 -3.99 16 17 C 0.03 1.09 9.15 22.81 0.21 1.30 16 18 C -0.12 -2.83 5.87 -20.13 -0.12 -2.95 16 19 C 0.55 11.51 8.27 70.34 0.58 12.09 16 20 O -0.53 -14.87 17.13 19.95 0.34 -14.53 16 21 O -0.49 -5.75 12.67 -56.20 -0.71 -6.46 16 22 C 0.02 0.51 9.14 22.60 0.21 0.72 16 23 C -0.02 -0.49 6.86 36.30 0.25 -0.24 16 24 N -0.01 -0.36 4.98 -46.65 -0.23 -0.59 16 25 O -0.20 -6.05 19.15 3.51 0.07 -5.99 16 26 O -0.15 -3.98 19.15 3.52 0.07 -3.91 16 27 C -0.03 -0.98 6.93 22.60 0.16 -0.82 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 32 H 0.03 1.06 7.09 -2.39 -0.02 1.05 16 33 H 0.09 2.98 8.11 -2.38 -0.02 2.96 16 34 H 0.10 3.22 4.14 -2.39 -0.01 3.21 16 35 H 0.27 14.60 8.27 -92.71 -0.77 13.83 16 36 H 0.15 5.21 7.58 -2.91 -0.02 5.19 16 37 H 0.44 0.98 9.11 -74.06 -0.67 0.30 16 38 H 0.20 3.00 7.11 -2.91 -0.02 2.98 16 39 H 0.17 5.61 2.62 -2.91 -0.01 5.60 16 Total: -1.00 -73.92 349.78 4.22 -69.70 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.48 Total: 12.72 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 4.96 Total: 20.17 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.53 Total: -67.20 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -1.73 Total: -80.80 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.04 Total: 45.41 kcal Total: -73.92 4.22 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599231336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.845 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds