Wall clock time and date at job start Tue Mar 31 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00094 * 2 1 4 4 C 1.38471 * 119.97729 * 359.97438 * 3 2 1 5 5 C 1.39576 * 119.78076 * 180.02562 * 4 3 2 6 6 C 1.47712 * 120.12351 * 180.02562 * 5 4 3 7 7 O 1.21470 * 120.00026 * 325.22548 * 6 5 4 8 8 N 1.34777 * 120.00166 * 145.23034 * 6 5 4 9 9 C 1.33329 * 119.99986 * 186.89060 * 8 6 5 10 10 H 1.08004 * 119.99643 * 134.84641 * 9 8 6 11 11 C 1.46777 * 120.00022 * 314.84005 * 9 8 6 12 12 N 1.29314 * 120.00214 * 339.68947 * 11 9 8 13 13 Si 1.86800 * 119.99874 * 159.68370 * 11 9 8 14 14 H 1.48503 * 109.47007 * 90.00181 * 13 11 9 15 15 H 1.48501 * 109.47395 * 210.00152 * 13 11 9 16 16 H 1.48507 * 109.47383 * 330.00383 * 13 11 9 17 17 C 1.46497 * 119.99801 * 6.88430 * 8 6 5 18 18 C 1.53005 * 109.47021 * 100.96944 * 17 8 6 19 19 C 1.50701 * 109.47440 * 180.02562 * 18 17 8 20 20 O 1.20831 * 119.99856 * 359.97438 * 19 18 17 21 21 O 1.34220 * 120.00203 * 180.02562 * 19 18 17 22 22 C 1.39696 * 119.75021 * 359.75563 * 5 4 3 23 23 C 1.37933 * 119.95854 * 0.50127 * 22 5 4 24 24 C 1.38309 * 120.21205 * 359.49390 * 23 22 5 25 25 N 1.48016 * 119.87367 * 180.23488 * 24 23 22 26 26 O 1.31703 * 119.99962 * 359.97438 * 25 24 23 27 27 O 1.31702 * 120.00084 * 180.02562 * 25 24 23 28 28 H 1.08998 * 109.46858 * 299.99949 * 1 2 3 29 29 H 1.09001 * 109.46901 * 60.00047 * 1 2 3 30 30 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.11177 * 0.02562 * 4 3 2 32 32 H 0.97002 * 120.00074 * 185.04171 * 12 11 9 33 33 H 1.09000 * 109.47426 * 220.96973 * 17 8 6 34 34 H 1.09005 * 109.47427 * 340.97242 * 17 8 6 35 35 H 1.09000 * 109.47044 * 300.00263 * 18 17 8 36 36 H 1.08997 * 109.47113 * 60.00042 * 18 17 8 37 37 H 0.96703 * 117.00126 * 179.97438 * 21 19 18 38 38 H 1.08005 * 120.02303 * 180.27321 * 22 5 4 39 39 H 1.07994 * 119.89580 * 179.77481 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2915 2.3720 -0.0005 5 6 1.9294 3.6134 -0.0011 6 6 1.1319 4.8567 -0.0011 7 8 0.0764 4.9012 -0.6007 8 7 1.5753 5.9418 0.6641 9 6 0.7957 7.0172 0.7803 10 1 0.7021 7.5158 1.7338 11 6 0.0648 7.5234 -0.3876 12 7 0.4515 7.2057 -1.5799 13 14 -1.4241 8.6265 -0.1514 14 1 -0.9886 10.0458 -0.1198 15 1 -2.3730 8.4248 -1.2758 16 1 -2.0945 8.2858 1.1292 17 6 2.9137 5.9396 1.2596 18 6 3.8756 6.7129 0.3552 19 6 5.2526 6.7102 0.9674 20 8 5.4450 6.1477 2.0194 21 8 6.2652 7.3333 0.3446 22 6 3.3250 3.6756 0.0041 23 6 4.0663 2.5125 -0.0007 24 6 3.4325 1.2832 -0.0001 25 7 4.2355 0.0397 -0.0001 26 8 5.5509 0.1053 -0.0011 27 8 3.6345 -1.1322 -0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2129 2.3171 -0.0005 32 1 0.0146 7.5980 -2.3521 33 1 2.8760 6.4142 2.2401 34 1 3.2623 4.9123 1.3664 35 1 3.9133 6.2383 -0.6253 36 1 3.5271 7.7402 0.2484 37 1 7.1302 7.3046 0.7761 38 1 3.8232 4.6339 0.0082 39 1 5.1452 2.5618 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599350654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:28 Heat of formation + Delta-G solvation = -87.765577 kcal Electronic energy + Delta-G solvation = -29935.744761 eV Core-core repulsion = 25428.788896 eV Total energy + Delta-G solvation = -4506.955865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25927 -41.31544 -40.50291 -39.73511 -38.36424 -37.25582 -36.64133 -35.43833 -34.60489 -33.00106 -32.31943 -31.59778 -28.66739 -28.44624 -26.59192 -25.67831 -23.79869 -23.73470 -22.22288 -21.56855 -20.10010 -19.58655 -19.20939 -19.15445 -18.35871 -17.73386 -17.47784 -17.39674 -17.21436 -16.92168 -16.59965 -16.46465 -16.17893 -15.77099 -15.56015 -15.28611 -14.72420 -14.52227 -14.11119 -13.94956 -13.70221 -13.57381 -13.11018 -12.93134 -12.75273 -12.71236 -12.63747 -12.51556 -12.45788 -12.44647 -12.16873 -12.11998 -11.90134 -11.81189 -11.58987 -10.95766 -10.75327 -10.33036 -9.79226 -9.48950 -8.42304 -5.93473 -1.86010 -0.23255 -0.15833 0.05819 1.22058 1.40255 1.48183 1.54412 1.71377 1.77588 2.07952 2.29566 2.52284 2.77338 3.07939 3.11927 3.52133 3.53863 3.65175 3.73421 3.89801 3.96582 4.18006 4.25985 4.26434 4.40420 4.46712 4.50948 4.57539 4.65704 4.68243 4.80473 4.92223 5.06738 5.08338 5.28009 5.64680 5.66112 5.80641 6.02119 6.64575 7.03413 7.07667 7.39710 8.15473 8.59020 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.004650 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.082295 B = 6019.531344 C = 8392.688977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.293 6.293 3 C 0.206 3.794 4 C -0.182 4.182 5 C -0.001 4.001 6 C 0.458 3.542 7 O -0.572 6.572 8 N -0.406 5.406 9 C -0.402 4.402 10 H 0.094 0.906 11 C 0.046 3.954 12 N -0.805 5.805 13 Si 0.972 3.028 14 H -0.259 1.259 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.083 3.917 18 C -0.125 4.125 19 C 0.496 3.504 20 O -0.540 6.540 21 O -0.510 6.510 22 C -0.158 4.158 23 C -0.007 4.007 24 C -0.061 4.061 25 N 0.002 4.998 26 O -0.213 6.213 27 O -0.189 6.189 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.278 0.722 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.429 0.571 38 H 0.173 0.827 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -2.506 2.467 6.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.203 6.203 3 C 0.156 3.844 4 C -0.202 4.202 5 C -0.006 4.006 6 C 0.249 3.751 7 O -0.455 6.455 8 N -0.122 5.122 9 C -0.529 4.529 10 H 0.112 0.888 11 C -0.174 4.174 12 N -0.433 5.433 13 Si 0.796 3.204 14 H -0.184 1.184 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.039 4.039 18 C -0.164 4.164 19 C 0.340 3.660 20 O -0.430 6.430 21 O -0.324 6.324 22 C -0.177 4.177 23 C -0.026 4.026 24 C -0.151 4.151 25 N 0.470 4.530 26 O -0.397 6.397 27 O -0.379 6.379 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.291 0.709 38 H 0.189 0.811 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.890 -2.349 2.065 4.991 hybrid contribution -0.174 0.305 0.058 0.356 sum 3.716 -2.044 2.123 4.742 Atomic orbital electron populations 1.23681 0.74863 1.06985 1.03123 1.86407 1.24714 1.23731 1.85422 1.18551 0.89094 0.86587 0.90188 1.21270 1.01759 0.88961 1.08219 1.20721 0.94464 0.94732 0.90703 1.18313 0.86462 0.82806 0.87477 1.90590 1.25938 1.83311 1.45645 1.42229 1.11569 1.10686 1.47690 1.20171 1.29119 1.08567 0.95081 0.88836 1.27635 0.99850 0.96104 0.93766 1.68868 1.38578 1.35956 0.99915 0.85299 0.78427 0.78489 0.78201 1.18392 1.21535 1.19053 1.22226 0.82919 1.01989 0.96801 1.21662 0.87691 1.06010 1.00991 1.23198 0.87186 0.73644 0.82014 1.90724 1.84874 1.43511 1.23929 1.84522 1.22720 1.70412 1.54739 1.22006 0.92321 0.99662 1.03735 1.21052 1.02981 0.87483 0.91038 1.19996 0.87508 0.83414 1.24199 1.50320 1.02899 1.04163 0.95588 1.96220 0.89621 1.95904 1.57978 1.96274 1.73035 1.12169 1.56432 0.90780 0.91214 0.84474 0.81904 0.91031 0.90320 0.87872 0.87327 0.86602 0.70898 0.81060 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.29 -8.37 8.39 -71.27 -0.60 -8.96 16 3 C 0.21 6.39 6.67 22.47 0.15 6.54 16 4 C -0.18 -5.85 8.60 22.65 0.19 -5.66 16 5 C 0.00 -0.04 5.49 -20.10 -0.11 -0.15 16 6 C 0.46 20.48 6.87 86.75 0.60 21.08 16 7 O -0.57 -30.27 14.33 -3.62 -0.05 -30.32 16 8 N -0.41 -17.31 2.48 -634.09 -1.57 -18.88 16 9 C -0.40 -18.81 9.25 86.70 0.80 -18.00 16 10 H 0.09 4.22 8.00 -2.91 -0.02 4.20 16 11 C 0.05 2.19 4.46 87.30 0.39 2.58 16 12 N -0.81 -40.79 11.84 23.25 0.28 -40.51 16 13 Si 0.97 38.61 29.69 68.60 2.04 40.65 16 14 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 15 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 17 C 0.08 2.77 4.12 86.38 0.36 3.13 16 18 C -0.13 -3.62 5.10 29.85 0.15 -3.47 16 19 C 0.50 12.32 8.24 71.24 0.59 12.91 16 20 O -0.54 -15.70 16.74 21.95 0.37 -15.34 16 21 O -0.51 -9.59 13.42 -51.32 -0.69 -10.28 16 22 C -0.16 -4.74 7.40 22.55 0.17 -4.57 16 23 C -0.01 -0.18 9.56 22.21 0.21 0.03 16 24 C -0.06 -1.94 6.90 36.54 0.25 -1.69 16 25 N 0.00 0.08 4.98 -46.08 -0.23 -0.15 16 26 O -0.21 -7.51 19.14 3.51 0.07 -7.45 16 27 O -0.19 -7.03 17.86 10.86 0.19 -6.83 16 28 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 29 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 30 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.16 5.01 6.23 -2.91 -0.02 4.99 16 32 H 0.28 13.39 8.27 -92.71 -0.77 12.63 16 33 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 34 H 0.10 3.19 4.03 -2.38 -0.01 3.18 16 35 H 0.11 3.13 6.95 -2.39 -0.02 3.12 16 36 H 0.12 3.60 8.11 -2.39 -0.02 3.58 16 37 H 0.43 3.91 9.10 -74.06 -0.67 3.24 16 38 H 0.17 4.80 3.01 -2.91 -0.01 4.79 16 39 H 0.18 4.17 7.56 -2.91 -0.02 4.15 16 Total: -1.00 -68.12 345.43 5.15 -62.98 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.49 Total: 21.14 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 4.86 Total: 13.96 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -1.52 Total: -59.54 kcal Atomic # 8 Polarization: -78.47 SS G_CDS: -0.71 Total: -79.18 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.04 Total: 40.65 kcal Total: -68.12 5.15 -62.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599350654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.790 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds