Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35685 * 117.00025 * 2 1 4 4 C 1.39058 * 119.90573 * 359.97438 * 3 2 1 5 5 C 1.37636 * 120.09676 * 179.97438 * 4 3 2 6 6 C 1.39863 * 119.90419 * 0.02562 * 5 4 3 7 7 C 1.47428 * 120.09731 * 179.97438 * 6 5 4 8 8 O 1.21509 * 120.00445 * 144.87249 * 7 6 5 9 9 N 1.34778 * 119.99974 * 324.87635 * 7 6 5 10 10 C 1.33316 * 119.99677 * 4.45442 * 9 7 6 11 11 H 1.08003 * 120.00119 * 317.05376 * 10 9 7 12 12 C 1.46786 * 119.99651 * 137.06097 * 10 9 7 13 13 N 1.29310 * 119.99981 * 345.57922 * 12 10 9 14 14 Si 1.86796 * 119.99729 * 165.58718 * 12 10 9 15 15 H 1.48497 * 109.47500 * 59.99644 * 14 12 10 16 16 H 1.48500 * 109.47091 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47346 * 299.99497 * 14 12 10 18 18 C 1.46498 * 120.00343 * 184.46115 * 9 7 6 19 19 C 1.52996 * 109.47166 * 89.06806 * 18 9 7 20 20 C 1.50701 * 109.47095 * 180.02562 * 19 18 9 21 21 O 1.20830 * 119.99741 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00557 * 179.97438 * 20 19 18 23 23 C 1.39821 * 119.80721 * 359.97438 * 6 5 4 24 24 C 1.37675 * 119.90724 * 359.74512 * 23 6 5 25 25 N 1.48013 * 119.95782 * 180.25484 * 24 23 6 26 26 O 1.31704 * 119.99708 * 0.25241 * 25 24 23 27 27 O 1.31701 * 120.00285 * 180.26058 * 25 24 23 28 28 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47126 * 300.00310 * 1 2 3 30 30 H 1.08999 * 109.46515 * 60.00653 * 1 2 3 31 31 H 1.07997 * 119.95274 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.04916 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99933 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47273 * 209.07338 * 18 9 7 35 35 H 1.08998 * 109.46855 * 329.07037 * 18 9 7 36 36 H 1.09006 * 109.47264 * 300.00006 * 19 18 9 37 37 H 1.09000 * 109.47484 * 60.00073 * 19 18 9 38 38 H 0.96697 * 117.00515 * 179.97438 * 22 20 19 39 39 H 1.08007 * 120.04891 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2857 2.3739 -0.0005 5 6 1.9065 3.6024 0.0000 6 6 3.3031 3.6779 0.0005 7 6 3.9724 4.9914 0.0005 8 8 5.0149 5.1422 0.6064 9 7 3.4281 6.0252 -0.6714 10 6 2.2409 5.8853 -1.2618 11 1 2.0158 4.9857 -1.8155 12 6 1.2399 6.9539 -1.1593 13 7 1.3857 7.8946 -0.2841 14 14 -0.2446 6.9548 -2.2930 15 1 -1.0267 5.7096 -2.0857 16 1 -1.0985 8.1313 -1.9896 17 1 0.2107 7.0241 -3.7048 18 6 4.1408 7.3024 -0.7533 19 6 5.0591 7.2965 -1.9770 20 6 5.7928 8.6102 -2.0609 21 8 5.6005 9.4638 -1.2275 22 8 6.6599 8.8322 -3.0612 23 6 4.0626 2.5039 0.0011 24 6 3.4335 1.2793 0.0064 25 7 4.2364 0.0359 0.0127 26 8 5.5518 0.1016 0.0182 27 8 3.6356 -1.1360 0.0126 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 0.2074 2.3148 -0.0005 32 1 1.3160 4.5067 0.0000 33 1 0.7240 8.6006 -0.2161 34 1 3.4204 8.1154 -0.8435 35 1 4.7374 7.4439 0.1479 36 1 5.7796 6.4835 -1.8868 37 1 4.4626 7.1550 -2.8783 38 1 7.1062 9.6899 -3.0732 39 1 5.1413 2.5577 0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599479159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = -97.216254 kcal Electronic energy + Delta-G solvation = -29389.467369 eV Core-core repulsion = 24882.101693 eV Total energy + Delta-G solvation = -4507.365677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.77945 -39.95777 -39.11940 -38.37142 -36.96556 -35.90356 -35.28909 -33.96957 -32.52411 -32.02745 -31.07421 -30.10648 -27.75253 -26.31636 -25.17511 -24.60799 -22.53030 -22.21847 -20.71343 -19.75755 -18.89113 -18.02679 -17.87692 -17.69271 -16.97701 -16.47371 -16.28381 -16.15261 -15.76964 -15.46897 -15.34559 -14.73857 -14.68956 -14.49525 -14.14051 -13.75717 -13.47587 -12.87869 -12.81641 -12.65243 -12.58096 -12.16545 -12.02881 -11.58632 -11.48680 -11.30205 -11.25845 -11.22332 -11.04095 -10.94888 -10.73506 -10.65721 -10.33586 -10.31191 -10.23372 -9.54931 -9.34298 -8.97127 -8.43984 -8.00758 -6.84868 -4.38519 -0.27958 0.98935 1.41507 1.45928 2.55259 2.79950 2.83932 2.92259 2.93912 3.14645 3.31074 3.72207 3.95088 4.27327 4.49258 4.51124 4.60240 4.94649 4.97759 5.10395 5.21341 5.27105 5.34870 5.45384 5.55568 5.64092 5.79010 5.89664 6.13143 6.15501 6.25384 6.44327 6.52683 6.64830 6.72648 6.83583 6.96872 7.10746 7.14942 7.48855 7.94813 8.19179 8.48457 9.11709 9.63074 10.10249 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.004029 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.784666 B = 6947.133838 C = 8895.364781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.282 6.282 3 C 0.202 3.798 4 C -0.236 4.236 5 C 0.033 3.967 6 C -0.122 4.122 7 C 0.503 3.497 8 O -0.590 6.590 9 N -0.402 5.402 10 C -0.409 4.409 11 H 0.096 0.904 12 C 0.059 3.941 13 N -0.809 5.809 14 Si 0.914 3.086 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 C 0.122 3.878 19 C -0.125 4.125 20 C 0.483 3.517 21 O -0.514 6.514 22 O -0.524 6.524 23 C 0.012 3.988 24 C -0.054 4.054 25 N 0.000 5.000 26 O -0.205 6.205 27 O -0.166 6.166 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.285 0.715 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.402 0.598 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 -4.082 -3.766 7.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.192 6.192 3 C 0.152 3.848 4 C -0.255 4.255 5 C 0.014 3.986 6 C -0.126 4.126 7 C 0.293 3.707 8 O -0.476 6.476 9 N -0.117 5.117 10 C -0.537 4.537 11 H 0.113 0.887 12 C -0.159 4.159 13 N -0.438 5.438 14 Si 0.739 3.261 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.001 4.001 19 C -0.164 4.164 20 C 0.326 3.674 21 O -0.402 6.402 22 O -0.335 6.335 23 C -0.009 4.009 24 C -0.143 4.143 25 N 0.473 4.527 26 O -0.389 6.389 27 O -0.361 6.361 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.202 0.798 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.260 0.740 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.048 -3.576 -3.141 6.938 hybrid contribution -0.512 0.445 -0.701 0.976 sum -5.560 -3.131 -3.842 7.448 Atomic orbital electron populations 1.23289 0.77412 1.04807 1.02068 1.86350 1.22158 1.24881 1.85837 1.18948 0.89213 0.86398 0.90217 1.21395 1.00885 0.90792 1.12452 1.22681 0.94676 0.98979 0.82232 1.19954 0.93548 0.93666 1.05453 1.17991 0.86443 0.84911 0.81403 1.90664 1.26083 1.84524 1.46360 1.41977 1.16854 1.09482 1.43384 1.20110 0.90560 1.06903 1.36114 0.88716 1.27097 0.98385 0.95456 0.94921 1.68852 1.35252 1.11281 1.28444 0.86214 0.80227 0.78674 0.81018 1.18983 1.20451 1.19042 1.21285 0.94910 0.89388 0.94532 1.21829 0.99204 0.91412 1.03982 1.23717 0.76323 0.90051 0.77343 1.90711 1.62772 1.46725 1.39996 1.84584 1.55165 1.42971 1.50804 1.20987 1.02403 0.87814 0.89652 1.19479 0.87105 0.83474 1.24237 1.50187 1.03011 1.03739 0.95775 1.96265 0.89065 1.95862 1.57751 1.96259 1.73114 1.11708 1.55069 0.87431 0.91865 0.91828 0.83101 0.79769 0.90264 0.87064 0.91037 0.88349 0.87541 0.73980 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.87 8.39 -40.95 -0.34 -4.22 16 3 C 0.20 3.04 6.69 -38.98 -0.26 2.78 16 4 C -0.24 -3.15 9.01 -39.50 -0.36 -3.51 16 5 C 0.03 0.52 7.79 -39.19 -0.31 0.22 16 6 C -0.12 -2.26 5.45 -104.96 -0.57 -2.84 16 7 C 0.50 10.95 7.34 -12.52 -0.09 10.86 16 8 O -0.59 -14.43 16.38 5.36 0.09 -14.34 16 9 N -0.40 -8.64 2.43 -114.48 -0.28 -8.92 16 10 C -0.41 -8.37 6.29 -13.45 -0.08 -8.46 16 11 H 0.10 1.84 6.49 -52.48 -0.34 1.50 16 12 C 0.06 1.21 5.19 -15.16 -0.08 1.13 16 13 N -0.81 -17.93 11.52 56.00 0.65 -17.29 16 14 Si 0.91 15.74 29.66 -169.99 -5.04 10.70 16 15 H -0.27 -4.34 7.11 56.52 0.40 -3.94 16 16 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 17 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 18 C 0.12 2.60 4.30 -4.04 -0.02 2.59 16 19 C -0.13 -2.22 6.13 -27.88 -0.17 -2.39 16 20 C 0.48 8.16 8.33 36.01 0.30 8.46 16 21 O -0.51 -10.21 16.74 -18.75 -0.31 -10.53 16 22 O -0.52 -6.90 13.42 -39.25 -0.53 -7.42 16 23 C 0.01 0.21 9.13 -39.20 -0.36 -0.14 16 24 C -0.05 -0.94 6.89 -79.86 -0.55 -1.49 16 25 N 0.00 0.00 4.98 34.00 0.17 0.17 16 26 O -0.20 -4.09 19.14 -31.57 -0.60 -4.69 16 27 O -0.17 -3.18 17.87 -39.24 -0.70 -3.88 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 31 H 0.15 1.49 6.28 -52.49 -0.33 1.16 16 32 H 0.19 3.10 5.68 -52.48 -0.30 2.80 16 33 H 0.28 5.93 8.26 -40.82 -0.34 5.60 16 34 H 0.11 2.55 5.61 -51.93 -0.29 2.26 16 35 H 0.07 1.66 7.35 -51.93 -0.38 1.28 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.40 3.39 9.10 45.56 0.41 3.81 16 39 H 0.16 2.94 7.51 -52.48 -0.39 2.55 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -29.56 350.23 -6.00 -35.56 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -2.82 Total: 11.22 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.56 Total: 8.36 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.54 Total: -26.04 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.40 Total: -45.09 kcal Atomic # 14 Polarization: 15.74 SS G_CDS: -5.04 Total: 10.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.56 -6.00 -35.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599479159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.653 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds