Wall clock time and date at job start Tue Mar 31 2020 20:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35685 * 117.00025 * 2 1 4 4 C 1.39058 * 119.90573 * 359.97438 * 3 2 1 5 5 C 1.37636 * 120.09676 * 179.97438 * 4 3 2 6 6 C 1.39863 * 119.90419 * 0.02562 * 5 4 3 7 7 C 1.47428 * 120.09731 * 179.97438 * 6 5 4 8 8 O 1.21509 * 120.00445 * 144.87249 * 7 6 5 9 9 N 1.34778 * 119.99974 * 324.87635 * 7 6 5 10 10 C 1.33316 * 119.99677 * 4.45442 * 9 7 6 11 11 H 1.08003 * 120.00119 * 317.05376 * 10 9 7 12 12 C 1.46786 * 119.99651 * 137.06097 * 10 9 7 13 13 N 1.29310 * 119.99981 * 345.57922 * 12 10 9 14 14 Si 1.86796 * 119.99729 * 165.58718 * 12 10 9 15 15 H 1.48497 * 109.47500 * 59.99644 * 14 12 10 16 16 H 1.48500 * 109.47091 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47346 * 299.99497 * 14 12 10 18 18 C 1.46498 * 120.00343 * 184.46115 * 9 7 6 19 19 C 1.52996 * 109.47166 * 89.06806 * 18 9 7 20 20 C 1.50701 * 109.47095 * 180.02562 * 19 18 9 21 21 O 1.20830 * 119.99741 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00557 * 179.97438 * 20 19 18 23 23 C 1.39821 * 119.80721 * 359.97438 * 6 5 4 24 24 C 1.37675 * 119.90724 * 359.74512 * 23 6 5 25 25 N 1.48013 * 119.95782 * 180.25484 * 24 23 6 26 26 O 1.31704 * 119.99708 * 0.25241 * 25 24 23 27 27 O 1.31701 * 120.00285 * 180.26058 * 25 24 23 28 28 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47126 * 300.00310 * 1 2 3 30 30 H 1.08999 * 109.46515 * 60.00653 * 1 2 3 31 31 H 1.07997 * 119.95274 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.04916 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99933 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47273 * 209.07338 * 18 9 7 35 35 H 1.08998 * 109.46855 * 329.07037 * 18 9 7 36 36 H 1.09006 * 109.47264 * 300.00006 * 19 18 9 37 37 H 1.09000 * 109.47484 * 60.00073 * 19 18 9 38 38 H 0.96697 * 117.00515 * 179.97438 * 22 20 19 39 39 H 1.08007 * 120.04891 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2857 2.3739 -0.0005 5 6 1.9065 3.6024 0.0000 6 6 3.3031 3.6779 0.0005 7 6 3.9724 4.9914 0.0005 8 8 5.0149 5.1422 0.6064 9 7 3.4281 6.0252 -0.6714 10 6 2.2409 5.8853 -1.2618 11 1 2.0158 4.9857 -1.8155 12 6 1.2399 6.9539 -1.1593 13 7 1.3857 7.8946 -0.2841 14 14 -0.2446 6.9548 -2.2930 15 1 -1.0267 5.7096 -2.0857 16 1 -1.0985 8.1313 -1.9896 17 1 0.2107 7.0241 -3.7048 18 6 4.1408 7.3024 -0.7533 19 6 5.0591 7.2965 -1.9770 20 6 5.7928 8.6102 -2.0609 21 8 5.6005 9.4638 -1.2275 22 8 6.6599 8.8322 -3.0612 23 6 4.0626 2.5039 0.0011 24 6 3.4335 1.2793 0.0064 25 7 4.2364 0.0359 0.0127 26 8 5.5518 0.1016 0.0182 27 8 3.6356 -1.1360 0.0126 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 0.2074 2.3148 -0.0005 32 1 1.3160 4.5067 0.0000 33 1 0.7240 8.6006 -0.2161 34 1 3.4204 8.1154 -0.8435 35 1 4.7374 7.4439 0.1479 36 1 5.7796 6.4835 -1.8868 37 1 4.4626 7.1550 -2.8783 38 1 7.1062 9.6899 -3.0732 39 1 5.1413 2.5577 0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599479159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:34 Heat of formation + Delta-G solvation = -115.546539 kcal Electronic energy + Delta-G solvation = -29390.262230 eV Core-core repulsion = 24882.101693 eV Total energy + Delta-G solvation = -4508.160538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05754 -41.34138 -40.59818 -39.72424 -38.29965 -37.25744 -36.91333 -35.44860 -34.13727 -33.42346 -32.49025 -31.43887 -28.59123 -27.74613 -26.77417 -26.06734 -23.87854 -23.50001 -22.10307 -21.34008 -20.28851 -19.32079 -19.23638 -19.03430 -18.46744 -17.82693 -17.62647 -17.41251 -17.12006 -16.89313 -16.54475 -16.29551 -16.14847 -15.73826 -15.52930 -15.11550 -14.79463 -14.34119 -14.12917 -14.03421 -13.78718 -13.54513 -13.19520 -13.02618 -12.79304 -12.71923 -12.57600 -12.54864 -12.43265 -12.17337 -12.10000 -12.02727 -11.95265 -11.83660 -11.67597 -11.11574 -10.69336 -10.60758 -9.73693 -9.65032 -8.41973 -6.02221 -1.72625 -0.30958 0.06555 0.07539 1.17624 1.45398 1.55566 1.62285 1.73985 1.82752 1.99593 2.30182 2.46522 2.80556 2.95163 3.29059 3.47666 3.72621 3.87700 3.95115 3.98047 4.12309 4.23402 4.36640 4.42093 4.46330 4.57226 4.68789 4.72761 4.77804 4.87687 5.00205 5.15840 5.17753 5.31087 5.36821 5.58157 5.66080 5.85340 5.93205 6.33576 6.86995 6.98888 7.45324 8.00615 8.54590 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.004029 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.784666 B = 6947.133838 C = 8895.364781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.295 6.295 3 C 0.221 3.779 4 C -0.209 4.209 5 C 0.040 3.960 6 C -0.139 4.139 7 C 0.488 3.512 8 O -0.632 6.632 9 N -0.404 5.404 10 C -0.417 4.417 11 H 0.110 0.890 12 C 0.029 3.971 13 N -0.847 5.847 14 Si 0.976 3.024 15 H -0.240 1.240 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.126 3.874 19 C -0.118 4.118 20 C 0.495 3.505 21 O -0.549 6.549 22 O -0.508 6.508 23 C 0.010 3.990 24 C -0.069 4.069 25 N 0.003 4.997 26 O -0.253 6.253 27 O -0.155 6.155 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.200 0.800 32 H 0.182 0.818 33 H 0.286 0.714 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.427 0.573 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -5.271 -5.325 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.205 6.205 3 C 0.170 3.830 4 C -0.228 4.228 5 C 0.021 3.979 6 C -0.143 4.143 7 C 0.279 3.721 8 O -0.522 6.522 9 N -0.118 5.118 10 C -0.544 4.544 11 H 0.127 0.873 12 C -0.185 4.185 13 N -0.477 5.477 14 Si 0.798 3.202 15 H -0.163 1.163 16 H -0.214 1.214 17 H -0.193 1.193 18 C 0.002 3.998 19 C -0.157 4.157 20 C 0.338 3.662 21 O -0.440 6.440 22 O -0.322 6.322 23 C -0.011 4.011 24 C -0.159 4.159 25 N 0.471 4.529 26 O -0.427 6.427 27 O -0.356 6.356 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.217 0.783 32 H 0.199 0.801 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.289 0.711 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.236 -4.759 -4.730 10.623 hybrid contribution 0.361 0.775 -0.221 0.884 sum -7.875 -3.984 -4.951 10.119 Atomic orbital electron populations 1.23801 0.74136 1.07121 1.04034 1.86364 1.25450 1.24035 1.84649 1.19030 0.88218 0.87684 0.88114 1.21737 1.02792 0.88576 1.09677 1.22600 0.93163 1.00159 0.81974 1.19684 0.94774 0.91924 1.07928 1.18523 0.86341 0.86269 0.80946 1.90619 1.27979 1.85441 1.48137 1.42156 1.17373 1.09256 1.42990 1.20461 0.90249 1.07692 1.36034 0.87261 1.27856 1.00536 0.94581 0.95563 1.68960 1.36401 1.12120 1.30179 0.85255 0.77086 0.79267 0.78604 1.16323 1.21353 1.19330 1.21080 0.94673 0.89223 0.94805 1.21623 0.98997 0.92279 1.02782 1.23372 0.76331 0.89132 0.77351 1.90708 1.64121 1.47684 1.41494 1.84505 1.54109 1.44786 1.48759 1.20760 1.01766 0.88250 0.90287 1.19627 0.88183 0.82397 1.25662 1.50369 1.03012 1.04159 0.95368 1.96273 0.89726 1.95989 1.60670 1.96220 1.72939 1.12365 1.54067 0.85265 0.89843 0.89717 0.78322 0.80074 0.90167 0.88651 0.94266 0.88216 0.85991 0.71126 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.30 -6.92 8.39 -68.80 -0.58 -7.50 16 3 C 0.22 5.95 6.69 22.66 0.15 6.10 16 4 C -0.21 -4.69 9.01 22.32 0.20 -4.49 16 5 C 0.04 1.18 7.79 22.52 0.18 1.36 16 6 C -0.14 -5.19 5.45 -20.08 -0.11 -5.30 16 7 C 0.49 22.10 7.34 86.66 0.64 22.74 16 8 O -0.63 -32.88 16.38 -3.74 -0.06 -32.94 16 9 N -0.40 -17.81 2.43 -634.40 -1.54 -19.35 16 10 C -0.42 -16.79 6.29 86.70 0.55 -16.25 16 11 H 0.11 4.03 6.49 -2.91 -0.02 4.01 16 12 C 0.03 1.16 5.19 87.30 0.45 1.62 16 13 N -0.85 -37.81 11.52 23.26 0.27 -37.54 16 14 Si 0.98 30.29 29.66 68.60 2.03 32.33 16 15 H -0.24 -6.48 7.11 99.48 0.71 -5.77 16 16 H -0.29 -9.29 7.11 99.48 0.71 -8.59 16 17 H -0.27 -8.44 7.11 99.48 0.71 -7.74 16 18 C 0.13 5.61 4.30 86.38 0.37 5.98 16 19 C -0.12 -4.27 6.13 29.85 0.18 -4.08 16 20 C 0.49 16.72 8.33 71.24 0.59 17.32 16 21 O -0.55 -22.32 16.74 21.95 0.37 -21.96 16 22 O -0.51 -12.59 13.42 -51.40 -0.69 -13.28 16 23 C 0.01 0.37 9.13 22.52 0.21 0.58 16 24 C -0.07 -2.35 6.89 36.43 0.25 -2.10 16 25 N 0.00 0.11 4.98 -46.33 -0.23 -0.13 16 26 O -0.25 -10.55 19.14 3.51 0.07 -10.48 16 27 O -0.15 -5.76 17.87 10.85 0.19 -5.57 16 28 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.67 7.65 -2.39 -0.02 0.65 16 30 H 0.08 0.66 7.65 -2.39 -0.02 0.65 16 31 H 0.20 2.56 6.28 -2.91 -0.02 2.54 16 32 H 0.18 5.67 5.68 -2.91 -0.02 5.65 16 33 H 0.29 12.02 8.26 -92.71 -0.77 11.25 16 34 H 0.10 4.55 5.61 -2.39 -0.01 4.54 16 35 H 0.04 1.95 7.35 -2.39 -0.02 1.94 16 36 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 37 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 38 H 0.43 6.32 9.10 -74.06 -0.67 5.65 16 39 H 0.15 5.71 7.51 -2.91 -0.02 5.69 16 Total: -1.00 -67.95 350.23 5.08 -62.87 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.48 Total: 28.94 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 4.77 Total: 24.60 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -1.50 Total: -57.02 kcal Atomic # 8 Polarization: -91.03 SS G_CDS: -0.70 Total: -91.73 kcal Atomic # 14 Polarization: 30.29 SS G_CDS: 2.03 Total: 32.33 kcal Total: -67.95 5.08 -62.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599479159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.675 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds