Wall clock time and date at job start Tue Mar 31 2020 20:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35627 * 117.00076 * 2 1 4 4 C 1.38705 * 120.15663 * 0.02737 * 3 2 1 5 5 C 1.38055 * 120.09104 * 179.97438 * 4 3 2 6 6 C 1.38589 * 120.41346 * 0.02562 * 5 4 3 7 7 N 1.48011 * 119.84202 * 180.02562 * 6 5 4 8 8 O 1.31691 * 120.00452 * 359.97438 * 7 6 5 9 9 O 1.31710 * 119.99602 * 179.97438 * 7 6 5 10 10 C 1.37744 * 120.31181 * 359.72196 * 6 5 4 11 11 C 1.39810 * 119.90056 * 0.53165 * 10 6 5 12 12 C 1.47366 * 120.20393 * 179.73935 * 11 10 6 13 13 O 1.21516 * 119.99864 * 132.63979 * 12 11 10 14 14 N 1.34772 * 119.99976 * 312.64905 * 12 11 10 15 15 C 1.33306 * 120.00027 * 5.70701 * 14 12 11 16 16 H 1.07998 * 120.00675 * 318.13281 * 15 14 12 17 17 C 1.46796 * 119.99359 * 138.12718 * 15 14 12 18 18 N 1.29320 * 119.99675 * 168.29814 * 17 15 14 19 19 Si 1.86792 * 120.00449 * 348.29549 * 17 15 14 20 20 H 1.48505 * 109.46815 * 91.21438 * 19 17 15 21 21 H 1.48497 * 109.47499 * 211.21671 * 19 17 15 22 22 H 1.48498 * 109.47056 * 331.21924 * 19 17 15 23 23 C 1.46502 * 119.99637 * 185.71587 * 14 12 11 24 24 C 1.52994 * 109.47253 * 85.47011 * 23 14 12 25 25 C 1.50708 * 109.47269 * 179.97438 * 24 23 14 26 26 O 1.20828 * 119.99444 * 359.97438 * 25 24 23 27 27 O 1.34222 * 120.00155 * 179.97438 * 25 24 23 28 28 H 1.08996 * 109.46581 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47287 * 59.99778 * 1 2 3 30 30 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.95550 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.79190 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.05460 * 180.27807 * 10 6 5 34 34 H 0.96992 * 119.99937 * 179.97438 * 18 17 15 35 35 H 1.09003 * 109.46759 * 205.47033 * 23 14 12 36 36 H 1.08996 * 109.47167 * 325.46285 * 23 14 12 37 37 H 1.09003 * 109.47256 * 299.99717 * 24 23 14 38 38 H 1.08996 * 109.47627 * 59.99556 * 24 23 14 39 39 H 0.96703 * 116.99923 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2925 2.3738 0.0006 5 6 1.9207 3.6031 0.0011 6 6 3.3042 3.6841 0.0005 7 7 3.9645 5.0087 0.0017 8 8 3.2377 6.1069 0.0027 9 8 5.2792 5.0891 0.0017 10 6 4.0677 2.5376 0.0052 11 6 3.4452 1.2857 -0.0007 12 6 4.2555 0.0548 -0.0016 13 8 3.9914 -0.8469 0.7690 14 7 5.2895 -0.0707 -0.8568 15 6 5.6506 0.9596 -1.6217 16 1 4.8968 1.5693 -2.0976 17 6 7.0730 1.2655 -1.8171 18 7 7.4335 2.1107 -2.7271 19 14 8.3622 0.4341 -0.7513 20 1 8.8216 -0.8135 -1.4129 21 1 9.5164 1.3498 -0.5655 22 1 7.7734 0.1050 0.5716 23 6 6.0165 -1.3395 -0.9459 24 6 5.2981 -2.2712 -1.9240 25 6 6.0463 -3.5762 -2.0162 26 8 7.0512 -3.7435 -1.3665 27 8 5.5963 -4.5525 -2.8199 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2139 2.3194 0.0006 32 1 1.3303 4.5075 0.0020 33 1 5.1455 2.6055 0.0093 34 1 8.3733 2.3131 -2.8560 35 1 7.0305 -1.1531 -1.2998 36 1 6.0552 -1.8059 0.0384 37 1 4.2841 -2.4576 -1.5701 38 1 5.2594 -1.8048 -2.9083 39 1 6.1101 -5.3714 -2.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599622018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:40 Heat of formation + Delta-G solvation = -88.113488 kcal Electronic energy + Delta-G solvation = -29947.579518 eV Core-core repulsion = 25440.608567 eV Total energy + Delta-G solvation = -4506.970951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.76868 -40.06739 -38.82654 -38.77646 -36.91531 -36.03640 -35.26561 -33.97894 -32.68809 -31.98639 -30.88395 -30.57800 -27.79856 -25.74131 -25.27396 -24.98020 -23.13212 -21.84698 -20.95255 -19.81054 -18.58299 -18.02764 -17.97772 -17.75880 -16.92650 -16.43098 -16.39471 -16.09932 -15.95675 -15.62802 -15.47227 -14.99461 -14.77135 -14.31427 -13.97041 -13.63843 -13.35842 -13.32452 -12.87674 -12.76953 -12.66914 -12.38584 -12.09983 -11.98814 -11.40332 -11.37296 -11.34479 -11.30610 -11.04419 -10.88700 -10.70557 -10.41561 -10.33691 -10.25315 -10.03688 -9.49270 -9.21585 -8.95097 -8.56714 -8.15183 -6.78358 -4.22549 -0.26148 0.96783 1.40750 1.55294 2.42505 2.95016 3.03215 3.07025 3.13842 3.16877 3.23121 3.74799 3.91349 4.08940 4.45285 4.58894 4.64139 4.82274 4.95076 4.97449 5.05298 5.24257 5.31142 5.39263 5.42629 5.62477 5.68326 5.74340 5.93719 5.95147 5.99444 6.18216 6.19242 6.38968 6.53174 6.64639 6.95346 7.12211 7.20383 7.70949 8.01388 8.06980 8.53369 9.05714 9.50182 10.25563 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010499 B = 0.005117 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.216564 B = 5470.260892 C = 7601.106649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.281 6.281 3 C 0.211 3.789 4 C -0.222 4.222 5 C -0.010 4.010 6 C -0.058 4.058 7 N -0.003 5.003 8 O -0.207 6.207 9 O -0.164 6.164 10 C 0.055 3.945 11 C -0.121 4.121 12 C 0.516 3.484 13 O -0.574 6.574 14 N -0.424 5.424 15 C -0.409 4.409 16 H 0.103 0.897 17 C 0.083 3.917 18 N -0.807 5.807 19 Si 0.874 3.126 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.253 1.253 23 C 0.109 3.891 24 C -0.123 4.123 25 C 0.484 3.516 26 O -0.519 6.519 27 O -0.520 6.520 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.288 0.712 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 -4.818 0.944 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.191 6.191 3 C 0.161 3.839 4 C -0.242 4.242 5 C -0.029 4.029 6 C -0.145 4.145 7 N 0.471 4.529 8 O -0.393 6.393 9 O -0.360 6.360 10 C 0.035 3.965 11 C -0.125 4.125 12 C 0.306 3.694 13 O -0.459 6.459 14 N -0.141 5.141 15 C -0.536 4.536 16 H 0.121 0.879 17 C -0.136 4.136 18 N -0.435 5.435 19 Si 0.700 3.300 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.177 1.177 23 C -0.014 4.014 24 C -0.162 4.162 25 C 0.327 3.673 26 O -0.407 6.407 27 O -0.331 6.331 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.199 0.801 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.328 -5.558 1.374 12.692 hybrid contribution 1.064 -0.207 0.038 1.085 sum -10.264 -5.764 1.412 11.856 Atomic orbital electron populations 1.23241 0.78074 1.04685 1.01569 1.86285 1.21429 1.25532 1.85819 1.19378 0.91214 0.84839 0.88466 1.21043 1.00762 0.90461 1.11888 1.20795 0.91400 0.99283 0.91453 1.20105 0.92542 0.80950 1.20953 1.50316 1.03150 1.03853 0.95541 1.96203 1.62968 1.22579 1.57516 1.96328 0.88692 1.95896 1.55053 1.21473 1.03394 0.87654 0.83998 1.19174 0.90131 0.94589 1.08645 1.17626 0.84235 0.86022 0.81509 1.90668 1.72545 1.41989 1.40661 1.42263 1.28646 1.09479 1.33694 1.19800 0.91634 1.09966 1.32218 0.87912 1.27018 0.97899 0.94179 0.94518 1.68633 1.19337 1.28489 1.27042 0.86982 0.80964 0.79280 0.82818 1.19003 1.20698 1.17663 1.21592 0.95509 0.85319 0.99002 1.21751 1.00983 0.88925 1.04543 1.23682 0.83112 0.85568 0.74957 1.90708 1.25726 1.81169 1.43088 1.84574 1.57710 1.27540 1.63320 0.92155 0.92167 0.87678 0.83171 0.82930 0.80117 0.89947 0.90402 0.90006 0.87375 0.86773 0.73794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -4.19 9.48 -29.70 -0.28 -4.47 16 3 C 0.21 3.31 6.67 -38.65 -0.26 3.05 16 4 C -0.22 -2.72 9.03 -39.48 -0.36 -3.08 16 5 C -0.01 -0.13 9.56 -39.52 -0.38 -0.51 16 6 C -0.06 -1.01 6.88 -80.00 -0.55 -1.56 16 7 N 0.00 -0.07 4.98 33.94 0.17 0.10 16 8 O -0.21 -3.92 19.14 -31.56 -0.60 -4.53 16 9 O -0.16 -3.55 19.13 -31.57 -0.60 -4.15 16 10 C 0.05 1.04 7.47 -39.17 -0.29 0.75 16 11 C -0.12 -2.30 5.12 -104.84 -0.54 -2.84 16 12 C 0.52 11.25 6.92 -12.55 -0.09 11.16 16 13 O -0.57 -13.47 16.06 -5.77 -0.09 -13.57 16 14 N -0.42 -9.38 2.15 -114.50 -0.25 -9.63 16 15 C -0.41 -9.60 7.38 -13.45 -0.10 -9.70 16 16 H 0.10 2.56 6.91 -52.49 -0.36 2.20 16 17 C 0.08 2.01 5.59 -15.15 -0.08 1.93 16 18 N -0.81 -20.38 13.88 56.00 0.78 -19.60 16 19 Si 0.87 19.50 24.87 -169.99 -4.23 15.27 16 20 H -0.26 -5.86 6.75 56.52 0.38 -5.48 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.25 -5.76 7.08 56.52 0.40 -5.36 16 23 C 0.11 2.28 3.25 -4.04 -0.01 2.26 16 24 C -0.12 -2.15 6.11 -27.88 -0.17 -2.32 16 25 C 0.48 7.95 8.33 36.01 0.30 8.25 16 26 O -0.52 -10.03 16.74 -18.75 -0.31 -10.34 16 27 O -0.52 -6.54 13.42 -39.24 -0.53 -7.07 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.15 1.23 6.30 -52.49 -0.33 0.90 16 32 H 0.15 1.71 7.56 -52.48 -0.40 1.32 16 33 H 0.18 3.82 6.26 -52.49 -0.33 3.49 16 34 H 0.29 6.79 8.26 -40.82 -0.34 6.45 16 35 H 0.08 1.72 3.24 -51.93 -0.17 1.55 16 36 H 0.08 1.78 7.44 -51.93 -0.39 1.39 16 37 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.40 3.16 9.10 45.56 0.41 3.58 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -31.68 347.74 -5.02 -36.70 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -2.78 Total: 7.48 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.53 Total: 8.55 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.70 Total: -29.12 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.42 Total: -44.13 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.23 Total: 15.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.68 -5.02 -36.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599622018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.410 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds