Wall clock time and date at job start Tue Mar 31 2020 20:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35627 * 117.00076 * 2 1 4 4 C 1.38705 * 120.15663 * 0.02737 * 3 2 1 5 5 C 1.38055 * 120.09104 * 179.97438 * 4 3 2 6 6 C 1.38589 * 120.41346 * 0.02562 * 5 4 3 7 7 N 1.48011 * 119.84202 * 180.02562 * 6 5 4 8 8 O 1.31691 * 120.00452 * 359.97438 * 7 6 5 9 9 O 1.31710 * 119.99602 * 179.97438 * 7 6 5 10 10 C 1.37744 * 120.31181 * 359.72196 * 6 5 4 11 11 C 1.39810 * 119.90056 * 0.53165 * 10 6 5 12 12 C 1.47366 * 120.20393 * 179.73935 * 11 10 6 13 13 O 1.21516 * 119.99864 * 132.63979 * 12 11 10 14 14 N 1.34772 * 119.99976 * 312.64905 * 12 11 10 15 15 C 1.33306 * 120.00027 * 5.70701 * 14 12 11 16 16 H 1.07998 * 120.00675 * 318.13281 * 15 14 12 17 17 C 1.46796 * 119.99359 * 138.12718 * 15 14 12 18 18 N 1.29320 * 119.99675 * 168.29814 * 17 15 14 19 19 Si 1.86792 * 120.00449 * 348.29549 * 17 15 14 20 20 H 1.48505 * 109.46815 * 91.21438 * 19 17 15 21 21 H 1.48497 * 109.47499 * 211.21671 * 19 17 15 22 22 H 1.48498 * 109.47056 * 331.21924 * 19 17 15 23 23 C 1.46502 * 119.99637 * 185.71587 * 14 12 11 24 24 C 1.52994 * 109.47253 * 85.47011 * 23 14 12 25 25 C 1.50708 * 109.47269 * 179.97438 * 24 23 14 26 26 O 1.20828 * 119.99444 * 359.97438 * 25 24 23 27 27 O 1.34222 * 120.00155 * 179.97438 * 25 24 23 28 28 H 1.08996 * 109.46581 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47287 * 59.99778 * 1 2 3 30 30 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.95550 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.79190 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.05460 * 180.27807 * 10 6 5 34 34 H 0.96992 * 119.99937 * 179.97438 * 18 17 15 35 35 H 1.09003 * 109.46759 * 205.47033 * 23 14 12 36 36 H 1.08996 * 109.47167 * 325.46285 * 23 14 12 37 37 H 1.09003 * 109.47256 * 299.99717 * 24 23 14 38 38 H 1.08996 * 109.47627 * 59.99556 * 24 23 14 39 39 H 0.96703 * 116.99923 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2925 2.3738 0.0006 5 6 1.9207 3.6031 0.0011 6 6 3.3042 3.6841 0.0005 7 7 3.9645 5.0087 0.0017 8 8 3.2377 6.1069 0.0027 9 8 5.2792 5.0891 0.0017 10 6 4.0677 2.5376 0.0052 11 6 3.4452 1.2857 -0.0007 12 6 4.2555 0.0548 -0.0016 13 8 3.9914 -0.8469 0.7690 14 7 5.2895 -0.0707 -0.8568 15 6 5.6506 0.9596 -1.6217 16 1 4.8968 1.5693 -2.0976 17 6 7.0730 1.2655 -1.8171 18 7 7.4335 2.1107 -2.7271 19 14 8.3622 0.4341 -0.7513 20 1 8.8216 -0.8135 -1.4129 21 1 9.5164 1.3498 -0.5655 22 1 7.7734 0.1050 0.5716 23 6 6.0165 -1.3395 -0.9459 24 6 5.2981 -2.2712 -1.9240 25 6 6.0463 -3.5762 -2.0162 26 8 7.0512 -3.7435 -1.3665 27 8 5.5963 -4.5525 -2.8199 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2139 2.3194 0.0006 32 1 1.3303 4.5075 0.0020 33 1 5.1455 2.6055 0.0093 34 1 8.3733 2.3131 -2.8560 35 1 7.0305 -1.1531 -1.2998 36 1 6.0552 -1.8059 0.0384 37 1 4.2841 -2.4576 -1.5701 38 1 5.2594 -1.8048 -2.9083 39 1 6.1101 -5.3714 -2.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599622018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:39 Heat of formation + Delta-G solvation = -110.308817 kcal Electronic energy + Delta-G solvation = -29948.541980 eV Core-core repulsion = 25440.608567 eV Total energy + Delta-G solvation = -4507.933413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11060 -41.38303 -40.39769 -40.11755 -38.23348 -37.34146 -36.94453 -35.49702 -34.50007 -33.45558 -32.16144 -31.99268 -28.71474 -27.08741 -26.77550 -26.72655 -24.53106 -23.10439 -22.30027 -21.43821 -20.18758 -19.34006 -19.20922 -19.11711 -18.41731 -18.05782 -17.90838 -17.30371 -17.17342 -17.01338 -16.81433 -16.54078 -16.27891 -15.77126 -15.37063 -14.96968 -14.88069 -14.53686 -14.37051 -14.25049 -14.12846 -13.76192 -13.57888 -13.22395 -13.08298 -12.81153 -12.62085 -12.52492 -12.31107 -12.28858 -12.19550 -12.16066 -11.83702 -11.83030 -11.73510 -11.29164 -10.76541 -10.44587 -9.95221 -9.80532 -8.67062 -6.10805 -1.72481 -0.31810 0.09162 0.14592 1.10866 1.12964 1.25728 1.31150 1.62144 1.90043 2.02220 2.04768 2.28176 2.59918 2.77005 3.31730 3.45162 3.56155 3.74936 3.76960 3.83729 4.10079 4.24129 4.29374 4.32709 4.43820 4.52345 4.56256 4.61201 4.65615 4.69055 4.79669 4.81304 4.82736 5.15665 5.21367 5.51904 5.68354 5.90772 6.09249 6.12542 6.69080 6.93102 7.28585 7.71892 8.41292 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010499 B = 0.005117 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.216564 B = 5470.260892 C = 7601.106649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.306 6.306 3 C 0.229 3.771 4 C -0.195 4.195 5 C 0.016 3.984 6 C -0.074 4.074 7 N 0.001 4.999 8 O -0.154 6.154 9 O -0.261 6.261 10 C 0.044 3.956 11 C -0.159 4.159 12 C 0.518 3.482 13 O -0.595 6.595 14 N -0.435 5.435 15 C -0.396 4.396 16 H 0.085 0.915 17 C 0.055 3.945 18 N -0.844 5.844 19 Si 0.911 3.089 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.267 1.267 23 C 0.106 3.894 24 C -0.117 4.117 25 C 0.496 3.504 26 O -0.552 6.552 27 O -0.504 6.504 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.210 0.790 32 H 0.193 0.807 33 H 0.145 0.855 34 H 0.291 0.709 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.733 -5.285 0.869 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.216 6.216 3 C 0.178 3.822 4 C -0.214 4.214 5 C -0.003 4.003 6 C -0.163 4.163 7 N 0.472 4.528 8 O -0.359 6.359 9 O -0.433 6.433 10 C 0.024 3.976 11 C -0.164 4.164 12 C 0.309 3.691 13 O -0.481 6.481 14 N -0.152 5.152 15 C -0.524 4.524 16 H 0.103 0.897 17 C -0.160 4.160 18 N -0.474 5.474 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.017 4.017 24 C -0.155 4.155 25 C 0.340 3.660 26 O -0.443 6.443 27 O -0.317 6.317 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.226 0.774 32 H 0.210 0.790 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -15.664 -6.140 1.277 16.873 hybrid contribution 1.961 -0.141 0.130 1.970 sum -13.704 -6.281 1.407 15.140 Atomic orbital electron populations 1.23760 0.74446 1.06779 1.04079 1.86272 1.25151 1.25362 1.84788 1.19501 0.90010 0.86644 0.86058 1.21587 1.03039 0.88018 1.08731 1.21336 0.89293 1.01503 0.88197 1.20335 0.93971 0.79236 1.22715 1.50569 1.03019 1.04520 0.94737 1.96137 1.62588 1.23443 1.53714 1.96367 0.89541 1.96175 1.61193 1.21071 1.02062 0.88918 0.85578 1.19019 0.92000 0.92992 1.12340 1.18073 0.83790 0.86695 0.80539 1.90629 1.73012 1.43158 1.41256 1.42325 1.29140 1.09668 1.34070 1.19484 0.91007 1.10302 1.31597 0.89731 1.27357 0.98984 0.94593 0.95093 1.68665 1.19743 1.30277 1.28685 0.86413 0.79852 0.78799 0.81240 1.18573 1.20424 1.19156 1.21509 0.95360 0.85552 0.99232 1.21555 1.00932 0.89223 1.03800 1.23275 0.82200 0.85786 0.74744 1.90707 1.27118 1.81843 1.44666 1.84494 1.57561 1.28051 1.61615 0.89552 0.89472 0.86199 0.77368 0.79005 0.83775 0.89673 0.91743 0.91379 0.86521 0.86057 0.70909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.31 -8.07 9.48 -78.76 -0.75 -8.82 16 3 C 0.23 6.49 6.67 22.87 0.15 6.64 16 4 C -0.20 -3.65 9.03 22.34 0.20 -3.45 16 5 C 0.02 0.36 9.56 22.31 0.21 0.57 16 6 C -0.07 -2.53 6.88 36.34 0.25 -2.28 16 7 N 0.00 0.06 4.98 -46.55 -0.23 -0.18 16 8 O -0.15 -5.48 19.14 3.53 0.07 -5.42 16 9 O -0.26 -12.23 19.13 3.50 0.07 -12.17 16 10 C 0.04 1.75 7.47 22.53 0.17 1.92 16 11 C -0.16 -6.08 5.12 -20.00 -0.10 -6.19 16 12 C 0.52 23.20 6.92 86.65 0.60 23.80 16 13 O -0.59 -28.38 16.06 6.87 0.11 -28.27 16 14 N -0.43 -20.06 2.15 -634.47 -1.36 -21.42 16 15 C -0.40 -19.63 7.38 86.71 0.64 -18.99 16 16 H 0.09 4.48 6.91 -2.91 -0.02 4.46 16 17 C 0.06 2.83 5.59 87.30 0.49 3.32 16 18 N -0.84 -45.00 13.88 23.26 0.32 -44.68 16 19 Si 0.91 42.42 24.87 68.60 1.71 44.13 16 20 H -0.26 -11.80 6.75 99.48 0.67 -11.13 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.85 7.08 99.48 0.70 -12.15 16 23 C 0.11 4.61 3.25 86.38 0.28 4.89 16 24 C -0.12 -4.06 6.11 29.85 0.18 -3.88 16 25 C 0.50 15.90 8.33 71.24 0.59 16.49 16 26 O -0.55 -21.32 16.74 21.96 0.37 -20.95 16 27 O -0.50 -11.54 13.42 -51.34 -0.69 -12.23 16 28 H 0.09 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.09 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.21 1.56 6.30 -2.91 -0.02 1.54 16 32 H 0.19 2.94 7.56 -2.91 -0.02 2.92 16 33 H 0.14 6.75 6.26 -2.91 -0.02 6.73 16 34 H 0.29 14.50 8.26 -92.71 -0.77 13.73 16 35 H 0.06 2.95 3.24 -2.39 -0.01 2.95 16 36 H 0.07 3.09 7.44 -2.39 -0.02 3.07 16 37 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 39 H 0.43 5.55 9.10 -74.06 -0.67 4.87 16 Total: -1.00 -75.59 347.74 4.83 -70.76 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.44 Total: 15.25 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 4.78 Total: 23.99 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.27 Total: -66.28 kcal Atomic # 8 Polarization: -87.03 SS G_CDS: -0.82 Total: -87.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.71 Total: 44.13 kcal Total: -75.59 4.83 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599622018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.548 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds