Wall clock time and date at job start Tue Mar 31 2020 21:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38352 * 127.15416 * 2 1 4 4 C 1.39776 * 126.56353 * 0.02562 * 3 2 1 5 5 H 1.08000 * 120.00091 * 0.29754 * 4 3 2 6 6 C 1.40081 * 119.99867 * 180.30958 * 4 3 2 7 7 N 1.30810 * 120.00232 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99927 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47150 * 89.99678 * 8 6 4 10 10 H 1.48495 * 109.47286 * 209.99440 * 8 6 4 11 11 H 1.48502 * 109.47412 * 329.99923 * 8 6 4 12 12 N 1.33096 * 106.87337 * 180.28896 * 3 2 1 13 13 N 1.28516 * 109.74322 * 359.74298 * 12 3 2 14 14 C 1.32387 * 110.20605 * 359.97438 * 13 12 3 15 15 S 1.76195 * 126.25959 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00297 * 0.02580 * 15 14 13 17 17 C 1.52996 * 109.47193 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46816 * 180.02562 * 17 16 15 19 19 C 1.35353 * 126.75076 * 124.99944 * 18 17 16 20 20 N 1.35309 * 106.17498 * 179.97438 * 19 18 17 21 21 C 1.46499 * 125.87027 * 179.97438 * 20 19 18 22 22 C 1.50705 * 109.47187 * 124.97249 * 21 20 19 23 23 O 1.20824 * 119.99977 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99842 * 180.02562 * 22 21 20 25 25 N 1.28714 * 108.26535 * 359.97438 * 20 19 18 26 26 N 1.28637 * 110.18046 * 0.02562 * 25 20 19 27 27 H 1.08994 * 109.47417 * 270.15972 * 1 2 3 28 28 H 1.08997 * 109.46685 * 30.16438 * 1 2 3 29 29 H 1.09005 * 109.46865 * 150.15517 * 1 2 3 30 30 H 0.96998 * 120.00512 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46974 * 59.99714 * 16 15 14 32 32 H 1.09003 * 109.46863 * 300.00152 * 16 15 14 33 33 H 1.08997 * 109.47274 * 60.00453 * 17 16 15 34 34 H 1.09004 * 109.46966 * 299.99616 * 17 16 15 35 35 H 1.08002 * 126.91189 * 359.97438 * 19 18 17 36 36 H 1.08997 * 109.47592 * 244.97299 * 21 20 19 37 37 H 1.09007 * 109.46901 * 4.97623 * 21 20 19 38 38 H 0.96708 * 116.99564 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8596 2.7005 0.0058 6 6 2.8768 3.4568 -0.0061 7 7 4.1476 3.1466 -0.0123 8 14 2.3531 5.2499 -0.0062 9 1 2.2216 5.7272 1.3939 10 1 3.3746 6.0639 -0.7127 11 1 1.0468 5.3841 -0.6996 12 7 3.5491 0.6414 -0.0064 13 7 3.5370 -0.6438 -0.0049 14 6 2.2904 -1.0893 0.0032 15 16 1.7873 -2.7779 0.0075 16 6 3.4058 -3.5882 -0.0011 17 6 3.2162 -5.1064 0.0020 18 6 4.5638 -5.7809 -0.0046 19 6 5.0145 -6.6985 0.8826 20 7 6.2670 -7.0226 0.4862 21 6 7.1546 -7.9832 1.1461 22 6 7.6015 -9.0212 0.1491 23 8 7.2183 -8.9641 -0.9953 24 8 8.4253 -10.0092 0.5325 25 7 6.5446 -6.3417 -0.5702 26 7 5.5496 -5.5913 -0.8888 27 1 -0.3634 0.0029 1.0276 28 1 -0.3632 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5115 30 1 4.8180 3.8476 -0.0165 31 1 3.9659 -3.2906 0.8855 32 1 3.9556 -3.2921 -0.8945 33 1 2.6561 -5.4044 -0.8843 34 1 2.6666 -5.4021 0.8957 35 1 4.4816 -7.0927 1.7353 36 1 8.0256 -7.4609 1.5418 37 1 6.6207 -8.4698 1.9625 38 1 8.6848 -10.6512 -0.1425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600911825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:02 Heat of formation + Delta-G solvation = 84.205539 kcal Electronic energy + Delta-G solvation = -24953.631641 eV Core-core repulsion = 20961.471376 eV Total energy + Delta-G solvation = -3992.160264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.50219 -40.77263 -40.44405 -36.87741 -35.47175 -33.80384 -33.63357 -33.22713 -30.30035 -29.35674 -29.17307 -26.47637 -25.58275 -24.27901 -23.59165 -21.96323 -20.99204 -20.71467 -20.19734 -18.88727 -17.84934 -17.32449 -17.21768 -16.68817 -16.20569 -15.80233 -15.42319 -15.22728 -14.90875 -14.70142 -14.30454 -14.14280 -13.76748 -13.63699 -13.30667 -12.65342 -12.36475 -12.28404 -12.18047 -12.16340 -11.80716 -11.49977 -11.37325 -11.30769 -11.25379 -10.89271 -10.77084 -10.35915 -10.30525 -10.14247 -9.64853 -9.57412 -9.29420 -8.64114 -8.37390 -8.31692 -6.78339 -6.60565 -4.52868 1.21131 1.46294 1.65243 2.09686 2.41105 2.51911 2.88879 2.94904 3.08788 3.12515 3.41255 3.82969 3.90568 4.17516 4.26163 4.28881 4.42846 4.47984 4.68364 4.80289 5.18501 5.19711 5.37343 5.48646 5.58694 5.59792 5.79967 5.92747 6.00639 6.05125 6.08005 6.20341 6.38268 6.83116 6.93428 7.16284 7.28800 7.53772 7.94926 8.22082 8.36997 8.74501 8.90946 10.32042 10.70267 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.001968 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.910413 B =14221.942239 C =15119.383723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.346 3.654 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.263 1.263 12 N -0.333 5.333 13 N -0.283 5.283 14 C 0.049 3.951 15 S -0.060 6.060 16 C -0.084 4.084 17 C -0.017 4.017 18 C -0.002 4.002 19 C -0.045 4.045 20 N -0.299 5.299 21 C 0.131 3.869 22 C 0.466 3.534 23 O -0.480 6.480 24 O -0.512 6.512 25 N -0.060 5.060 26 N -0.247 5.247 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.279 0.721 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -23.135 6.225 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.101 3.899 4 C -0.488 4.488 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.187 1.187 12 N -0.181 5.181 13 N -0.129 5.129 14 C -0.323 4.323 15 S 0.167 5.833 16 C -0.234 4.234 17 C -0.058 4.058 18 C -0.140 4.140 19 C -0.194 4.194 20 N -0.094 5.094 21 C 0.007 3.993 22 C 0.304 3.696 23 O -0.365 6.365 24 O -0.324 6.324 25 N -0.039 5.039 26 N -0.115 5.115 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.212 0.788 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 2.688 -22.993 5.110 23.707 hybrid contribution -0.941 0.730 0.492 1.289 sum 1.747 -22.264 5.601 23.024 Atomic orbital electron populations 1.21483 0.78579 1.02684 1.01546 1.46045 1.06056 1.05343 1.64389 1.21632 0.84806 0.88421 0.95042 1.18090 0.94652 0.86451 1.49568 0.89820 1.25800 0.94352 1.01259 0.93362 1.70012 1.00700 1.34952 1.30383 0.86126 0.79389 0.80920 0.79125 1.19414 1.20011 1.18661 1.75472 1.15267 0.97895 1.29429 1.74568 1.15173 1.07523 1.15626 1.25253 0.91483 0.92447 1.23118 1.84169 1.11106 0.92255 1.95759 1.23203 0.97486 0.94975 1.07689 1.19636 0.89717 0.92229 1.04232 1.21864 0.98262 0.99609 0.94294 1.23344 0.86808 1.04376 1.04889 1.46764 1.12150 1.29618 1.20865 1.21196 0.97126 0.87964 0.92965 1.22957 0.76632 0.81529 0.88447 1.90893 1.52666 1.72795 1.20123 1.84435 1.61385 1.38750 1.47879 1.78469 1.21275 1.04281 0.99891 1.75182 0.97767 1.16154 1.22412 0.92623 0.90425 0.91505 0.91000 0.89227 0.88256 0.89089 0.89214 0.78790 0.83874 0.83294 0.71902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 10.87 59.85 0.65 2.55 16 2 N -0.52 -12.77 3.26 -123.18 -0.40 -13.17 16 3 C 0.35 9.90 7.53 -154.81 -1.17 8.73 16 4 C -0.45 -12.08 9.04 -38.32 -0.35 -12.42 16 5 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 6 C 0.08 2.03 5.50 -17.30 -0.10 1.93 16 7 N -0.74 -20.70 11.94 55.56 0.66 -20.04 16 8 Si 0.92 18.85 29.56 -169.99 -5.03 13.83 16 9 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 12 N -0.33 -10.33 10.48 31.26 0.33 -10.00 16 13 N -0.28 -8.06 11.62 30.89 0.36 -7.70 16 14 C 0.05 1.21 8.09 -87.28 -0.71 0.50 16 15 S -0.06 -1.09 21.78 -107.50 -2.34 -3.43 16 16 C -0.08 -1.39 5.20 37.16 0.19 -1.19 16 17 C -0.02 -0.21 5.80 -27.88 -0.16 -0.37 16 18 C 0.00 -0.02 6.50 -82.77 -0.54 -0.56 16 19 C -0.05 -0.41 11.49 -17.05 -0.20 -0.61 16 20 N -0.30 -2.98 3.20 -62.44 -0.20 -3.18 16 21 C 0.13 0.59 7.05 -5.19 -0.04 0.55 16 22 C 0.47 3.10 8.34 36.01 0.30 3.40 16 23 O -0.48 -5.69 16.44 -18.75 -0.31 -6.00 16 24 O -0.51 -1.80 13.42 -39.26 -0.53 -2.32 16 25 N -0.06 -0.89 12.13 60.35 0.73 -0.16 16 26 N -0.25 -4.07 12.40 33.29 0.41 -3.66 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 29 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.28 7.07 8.30 -40.82 -0.34 6.74 16 31 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 32 H 0.10 1.91 8.14 -51.91 -0.42 1.49 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.20 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.15 0.00 8.07 -51.93 -0.42 -0.42 16 38 H 0.42 0.05 9.10 45.56 0.41 0.46 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -42.01 358.01 -6.29 -48.30 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.28 Total: -0.37 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.10 Total: 2.51 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 1.89 Total: -57.90 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.84 Total: -8.32 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.34 Total: -3.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -42.01 -6.29 -48.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600911825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.509 kcal (2) G-P(sol) polarization free energy of solvation -42.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds