Wall clock time and date at job start Tue Mar 31 2020 21:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38352 * 127.15416 * 2 1 4 4 C 1.39776 * 126.56353 * 0.02562 * 3 2 1 5 5 H 1.08000 * 120.00091 * 0.29754 * 4 3 2 6 6 C 1.40081 * 119.99867 * 180.30958 * 4 3 2 7 7 N 1.30810 * 120.00232 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99927 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47150 * 89.99678 * 8 6 4 10 10 H 1.48495 * 109.47286 * 209.99440 * 8 6 4 11 11 H 1.48502 * 109.47412 * 329.99923 * 8 6 4 12 12 N 1.33096 * 106.87337 * 180.28896 * 3 2 1 13 13 N 1.28516 * 109.74322 * 359.74298 * 12 3 2 14 14 C 1.32387 * 110.20605 * 359.97438 * 13 12 3 15 15 S 1.76195 * 126.25959 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00297 * 0.02580 * 15 14 13 17 17 C 1.52996 * 109.47193 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46816 * 180.02562 * 17 16 15 19 19 C 1.35353 * 126.75076 * 124.99944 * 18 17 16 20 20 N 1.35309 * 106.17498 * 179.97438 * 19 18 17 21 21 C 1.46499 * 125.87027 * 179.97438 * 20 19 18 22 22 C 1.50705 * 109.47187 * 124.97249 * 21 20 19 23 23 O 1.20824 * 119.99977 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99842 * 180.02562 * 22 21 20 25 25 N 1.28714 * 108.26535 * 359.97438 * 20 19 18 26 26 N 1.28637 * 110.18046 * 0.02562 * 25 20 19 27 27 H 1.08994 * 109.47417 * 270.15972 * 1 2 3 28 28 H 1.08997 * 109.46685 * 30.16438 * 1 2 3 29 29 H 1.09005 * 109.46865 * 150.15517 * 1 2 3 30 30 H 0.96998 * 120.00512 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46974 * 59.99714 * 16 15 14 32 32 H 1.09003 * 109.46863 * 300.00152 * 16 15 14 33 33 H 1.08997 * 109.47274 * 60.00453 * 17 16 15 34 34 H 1.09004 * 109.46966 * 299.99616 * 17 16 15 35 35 H 1.08002 * 126.91189 * 359.97438 * 19 18 17 36 36 H 1.08997 * 109.47592 * 244.97299 * 21 20 19 37 37 H 1.09007 * 109.46901 * 4.97623 * 21 20 19 38 38 H 0.96708 * 116.99564 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8596 2.7005 0.0058 6 6 2.8768 3.4568 -0.0061 7 7 4.1476 3.1466 -0.0123 8 14 2.3531 5.2499 -0.0062 9 1 2.2216 5.7272 1.3939 10 1 3.3746 6.0639 -0.7127 11 1 1.0468 5.3841 -0.6996 12 7 3.5491 0.6414 -0.0064 13 7 3.5370 -0.6438 -0.0049 14 6 2.2904 -1.0893 0.0032 15 16 1.7873 -2.7779 0.0075 16 6 3.4058 -3.5882 -0.0011 17 6 3.2162 -5.1064 0.0020 18 6 4.5638 -5.7809 -0.0046 19 6 5.0145 -6.6985 0.8826 20 7 6.2670 -7.0226 0.4862 21 6 7.1546 -7.9832 1.1461 22 6 7.6015 -9.0212 0.1491 23 8 7.2183 -8.9641 -0.9953 24 8 8.4253 -10.0092 0.5325 25 7 6.5446 -6.3417 -0.5702 26 7 5.5496 -5.5913 -0.8888 27 1 -0.3634 0.0029 1.0276 28 1 -0.3632 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5115 30 1 4.8180 3.8476 -0.0165 31 1 3.9659 -3.2906 0.8855 32 1 3.9556 -3.2921 -0.8945 33 1 2.6561 -5.4044 -0.8843 34 1 2.6666 -5.4021 0.8957 35 1 4.4816 -7.0927 1.7353 36 1 8.0256 -7.4609 1.5418 37 1 6.6207 -8.4698 1.9625 38 1 8.6848 -10.6512 -0.1425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600911825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:01 Heat of formation + Delta-G solvation = 51.550280 kcal Electronic energy + Delta-G solvation = -24955.047679 eV Core-core repulsion = 20961.471376 eV Total energy + Delta-G solvation = -3993.576303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.32529 -42.43479 -41.29175 -37.34802 -36.28809 -35.61736 -35.16107 -34.63419 -31.37384 -31.08910 -29.96654 -28.25283 -27.43502 -25.42005 -24.27120 -22.83746 -22.70565 -22.31064 -21.45119 -19.36657 -19.24421 -18.47981 -17.89525 -17.75015 -17.23521 -17.15744 -16.64495 -16.54574 -16.27391 -16.02706 -15.79194 -15.34866 -15.04496 -14.27121 -14.23663 -13.92850 -13.82256 -13.69763 -13.50314 -13.10143 -12.94979 -12.79979 -12.73632 -12.68494 -12.46449 -12.03070 -11.98679 -11.75769 -11.68072 -11.59898 -11.42502 -11.12794 -10.55115 -10.33983 -10.26204 -10.15331 -8.53475 -8.49530 -6.57773 0.45312 0.53446 0.99759 1.14772 1.20934 1.28776 1.41451 1.54713 1.58657 1.62826 2.01632 2.19113 2.46309 2.53570 3.32597 3.35259 3.64878 3.92073 3.97700 4.03576 4.04049 4.10285 4.12217 4.32285 4.48673 4.52217 4.64592 4.67868 4.91260 4.95810 4.98035 5.05926 5.18898 5.32973 5.45263 5.57896 5.58356 6.05910 6.23101 6.76470 6.80256 6.94424 7.48696 8.42292 8.66659 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.001968 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.910413 B =14221.942239 C =15119.383723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.315 3.685 4 C -0.471 4.471 5 H 0.105 0.895 6 C 0.026 3.974 7 N -0.791 5.791 8 Si 1.009 2.991 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.246 1.246 12 N -0.392 5.392 13 N -0.336 5.336 14 C 0.054 3.946 15 S 0.009 5.991 16 C -0.080 4.080 17 C -0.004 4.004 18 C -0.037 4.037 19 C -0.010 4.010 20 N -0.292 5.292 21 C 0.121 3.879 22 C 0.473 3.527 23 O -0.543 6.543 24 O -0.498 6.498 25 N -0.108 5.108 26 N -0.306 5.306 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.284 0.716 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.255 0.745 36 H 0.167 0.833 37 H 0.207 0.793 38 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -24.830 8.543 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.068 3.932 4 C -0.511 4.511 5 H 0.123 0.877 6 C -0.194 4.194 7 N -0.416 5.416 8 Si 0.827 3.173 9 H -0.184 1.184 10 H -0.197 1.197 11 H -0.169 1.169 12 N -0.238 5.238 13 N -0.180 5.180 14 C -0.319 4.319 15 S 0.236 5.764 16 C -0.230 4.230 17 C -0.045 4.045 18 C -0.177 4.177 19 C -0.161 4.161 20 N -0.087 5.087 21 C 0.000 4.000 22 C 0.314 3.686 23 O -0.432 6.432 24 O -0.312 6.312 25 N -0.087 5.087 26 N -0.173 5.173 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.271 0.729 36 H 0.185 0.815 37 H 0.224 0.776 38 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 0.351 -24.736 7.434 25.831 hybrid contribution -0.193 0.932 -0.144 0.963 sum 0.158 -23.803 7.290 24.895 Atomic orbital electron populations 1.21872 0.75101 1.04509 1.03470 1.46401 1.08172 1.04334 1.63442 1.22081 0.85138 0.90034 0.95904 1.18627 0.96005 0.86388 1.50089 0.87721 1.27047 0.93898 1.06673 0.91831 1.70176 1.02471 1.36988 1.31936 0.84827 0.79394 0.73483 0.79571 1.18402 1.19742 1.16921 1.75318 1.17539 0.99209 1.31729 1.74444 1.17536 1.07114 1.18898 1.26520 0.90968 0.95857 1.18604 1.83814 1.11058 0.86712 1.94842 1.23247 0.96274 0.98397 1.05126 1.19636 0.90246 0.88157 1.06434 1.22167 0.98334 1.01780 0.95446 1.24160 0.85865 1.01642 1.04387 1.47172 1.13028 1.28986 1.19490 1.21898 0.98259 0.86968 0.92867 1.23369 0.75664 0.81712 0.87813 1.90890 1.55175 1.74393 1.22733 1.84412 1.60216 1.38371 1.48193 1.78360 1.21701 1.06045 1.02554 1.75096 0.99403 1.17968 1.24870 0.90526 0.89443 0.88908 0.90619 0.90762 0.91975 0.88712 0.85056 0.72924 0.81527 0.77632 0.70198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.28 10.87 127.77 1.39 4.67 16 2 N -0.52 -25.94 3.26 -543.63 -1.77 -27.71 16 3 C 0.32 18.65 7.53 133.23 1.00 19.65 16 4 C -0.47 -25.85 9.04 23.09 0.21 -25.64 16 5 H 0.10 5.05 7.31 -2.91 -0.02 5.03 16 6 C 0.03 1.37 5.50 85.29 0.47 1.84 16 7 N -0.79 -46.44 11.94 21.85 0.26 -46.18 16 8 Si 1.01 38.73 29.56 68.60 2.03 40.76 16 9 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 10 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 11 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 12 N -0.39 -25.61 10.48 -55.02 -0.58 -26.19 16 13 N -0.34 -20.09 11.62 -56.18 -0.65 -20.74 16 14 C 0.05 2.72 8.09 179.18 1.45 4.17 16 15 S 0.01 0.30 21.78 -56.49 -1.23 -0.93 16 16 C -0.08 -2.68 5.20 71.98 0.37 -2.30 16 17 C 0.00 -0.09 5.80 29.85 0.17 0.08 16 18 C -0.04 -0.93 6.50 41.60 0.27 -0.66 16 19 C -0.01 -0.15 11.49 83.49 0.96 0.81 16 20 N -0.29 -5.27 3.20 -351.46 -1.12 -6.39 16 21 C 0.12 0.69 7.05 85.63 0.60 1.29 16 22 C 0.47 5.53 8.34 71.24 0.59 6.12 16 23 O -0.54 -13.01 16.44 21.97 0.36 -12.65 16 24 O -0.50 -2.38 13.42 -51.41 -0.69 -3.07 16 25 N -0.11 -3.30 12.13 37.02 0.45 -2.85 16 26 N -0.31 -10.54 12.40 -48.59 -0.60 -11.14 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.90 7.54 -2.39 -0.02 2.88 16 29 H 0.09 2.76 7.85 -2.38 -0.02 2.74 16 30 H 0.28 15.05 8.30 -92.71 -0.77 14.28 16 31 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.13 1.78 8.12 -2.39 -0.02 1.76 16 35 H 0.25 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.17 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.21 -1.23 8.07 -2.38 -0.02 -1.25 16 38 H 0.44 -0.59 9.10 -74.05 -0.67 -1.27 16 Total: -1.00 -103.44 358.01 4.41 -99.04 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.46 Total: 8.01 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 7.49 Total: 10.03 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -4.02 Total: -141.19 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.33 Total: -15.72 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.23 Total: -0.93 kcal Total: -103.44 4.41 -99.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600911825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.587 kcal (2) G-P(sol) polarization free energy of solvation -103.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds