Wall clock time and date at job start Tue Mar 31 2020 21:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46877 * 2 1 4 4 C 1.50700 * 109.46886 * 240.00399 * 2 1 3 5 5 H 1.07997 * 120.00049 * 274.99349 * 4 2 1 6 6 C 1.37885 * 119.99766 * 94.72456 * 4 2 1 7 7 N 1.31516 * 119.99645 * 184.99727 * 6 4 2 8 8 Si 1.86797 * 120.00258 * 4.99333 * 6 4 2 9 9 H 1.48497 * 109.46770 * 85.04133 * 8 6 4 10 10 H 1.48495 * 109.47039 * 205.03932 * 8 6 4 11 11 H 1.48502 * 109.47237 * 325.04116 * 8 6 4 12 12 N 1.46494 * 109.47536 * 120.00064 * 2 1 3 13 13 C 1.46502 * 120.00013 * 60.00312 * 12 2 1 14 14 S 1.65597 * 120.00168 * 240.00019 * 12 2 1 15 15 O 1.42098 * 106.40543 * 203.54050 * 14 12 2 16 16 O 1.42103 * 106.40290 * 336.46155 * 14 12 2 17 17 C 1.76198 * 107.21778 * 90.00152 * 14 12 2 18 18 C 1.38306 * 120.36372 * 90.00238 * 17 14 12 19 19 N 1.31889 * 121.02127 * 180.02562 * 18 17 14 20 20 C 1.31748 * 121.84579 * 359.97438 * 19 18 17 21 21 C 1.39254 * 120.60656 * 0.02562 * 20 19 18 22 22 C 1.48470 * 120.53580 * 179.97438 * 21 20 19 23 23 N 1.34044 * 126.67506 * 179.68832 * 22 21 20 24 24 N 1.28990 * 107.26667 * 179.86858 * 23 22 21 25 25 N 1.28728 * 108.94223 * 0.40081 * 24 23 22 26 26 H 0.97001 * 125.33879 * 179.76841 * 25 24 23 27 27 N 1.28869 * 109.31944 * 359.74130 * 25 24 23 28 28 C 1.38431 * 120.35742 * 269.72389 * 17 14 12 29 29 H 1.09005 * 109.47020 * 174.04148 * 1 2 3 30 30 H 1.09005 * 109.46749 * 294.03570 * 1 2 3 31 31 H 1.08998 * 109.47724 * 54.04034 * 1 2 3 32 32 H 0.96998 * 119.99816 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47017 * 89.99717 * 13 12 2 34 34 H 1.09001 * 109.46985 * 210.00375 * 13 12 2 35 35 H 1.09004 * 109.46719 * 329.99702 * 13 12 2 36 36 H 1.07995 * 119.48562 * 0.02562 * 18 17 14 37 37 H 1.08004 * 119.69525 * 179.97438 * 20 19 18 38 38 H 1.07995 * 120.84341 * 359.97427 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3548 0.0118 -2.3600 7 7 2.6988 -0.6139 -3.4645 8 14 2.3029 1.8787 -2.3215 9 1 3.5905 2.3988 -1.7955 10 1 2.0846 2.3962 -3.6961 11 1 1.1925 2.3250 -1.4423 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 16 2.9705 0.1142 2.2861 15 8 3.7120 -0.8788 2.9813 16 8 3.5794 1.1830 1.5747 17 6 1.8962 0.8534 3.4710 18 6 1.5333 0.1623 4.6127 19 7 0.7296 0.7029 5.5079 20 6 0.2390 1.9165 5.3587 21 6 0.5570 2.6768 4.2363 22 6 0.0028 4.0440 4.0695 23 7 0.2304 4.8810 3.0475 24 7 -0.4359 5.9605 3.2810 25 7 -1.0570 5.8340 4.4014 26 1 -1.6263 6.5070 4.8064 27 7 -0.8043 4.6730 4.9004 28 6 1.4108 2.1345 3.2721 29 1 -0.3633 -1.0222 -0.1067 30 1 -0.3633 0.4186 0.9386 31 1 -0.3634 0.6034 -0.8318 32 1 2.9253 -0.1059 -4.2592 33 1 2.4159 -2.7376 0.9715 34 1 1.6240 -2.2852 2.5001 35 1 0.6905 -2.3002 0.9846 36 1 1.9139 -0.8355 4.7737 37 1 -0.4166 2.3251 6.1136 38 1 1.6818 2.6988 2.3921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603443829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:19 Heat of formation + Delta-G solvation = 72.459928 kcal Electronic energy + Delta-G solvation = -27400.255995 eV Core-core repulsion = 23407.586403 eV Total energy + Delta-G solvation = -3992.669592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.61359 -41.42654 -38.45998 -38.01186 -36.96832 -35.80663 -35.01669 -34.50065 -33.80742 -32.13168 -31.66766 -27.36742 -26.99263 -26.41054 -26.14769 -24.79387 -23.56140 -22.38852 -20.55243 -19.92527 -19.27397 -19.03460 -18.33601 -18.27822 -17.92195 -17.77704 -16.97068 -16.50376 -16.07133 -15.47504 -15.29984 -15.23211 -14.75997 -14.54230 -14.50468 -14.37793 -13.95209 -13.52871 -13.46890 -13.43736 -13.22080 -13.01562 -12.97788 -12.70195 -12.67414 -12.57312 -12.39663 -12.39275 -12.30952 -12.03526 -11.78016 -11.48671 -11.23732 -10.92679 -10.71505 -10.31896 -9.72223 -8.31203 -6.33755 -0.90131 -0.69840 -0.45105 0.02305 1.01326 1.28839 1.32500 1.41558 1.45603 1.94751 2.33260 2.34183 2.37677 2.71176 2.89386 3.07193 3.11915 3.24783 3.47779 3.58546 3.84670 4.01809 4.03008 4.17772 4.32822 4.44480 4.54762 4.66814 4.73334 4.81289 4.85527 4.95712 5.13198 5.17218 5.33333 5.52580 5.53352 5.56869 5.91462 6.33403 6.42356 6.73276 6.97087 7.31468 8.84300 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.004864 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.539864 B = 5755.325239 C = 7332.793651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.048 0.952 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.235 1.235 12 N -0.981 5.981 13 C 0.095 3.905 14 S 2.688 3.312 15 O -0.970 6.970 16 O -0.987 6.987 17 C -0.729 4.729 18 C 0.221 3.779 19 N -0.492 5.492 20 C 0.202 3.798 21 C -0.091 4.091 22 C 0.210 3.790 23 N -0.299 5.299 24 N -0.052 5.052 25 N -0.191 5.191 26 H 0.498 0.502 27 N -0.275 5.275 28 C 0.055 3.945 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.267 0.733 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.200 0.800 37 H 0.206 0.794 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 9.451 21.366 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.065 0.935 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.158 1.158 12 N -0.821 5.821 13 C -0.050 4.050 14 S 2.780 3.220 15 O -0.960 6.960 16 O -0.978 6.978 17 C -0.818 4.818 18 C 0.062 3.938 19 N -0.200 5.200 20 C 0.043 3.957 21 C -0.097 4.097 22 C -0.071 4.071 23 N -0.171 5.171 24 N -0.046 5.046 25 N -0.043 5.043 26 H 0.358 0.642 27 N -0.128 5.128 28 C 0.026 3.974 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.217 0.783 37 H 0.222 0.778 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.774 9.645 21.631 26.019 hybrid contribution -0.183 1.449 -0.878 1.704 sum -10.956 11.094 20.753 25.958 Atomic orbital electron populations 1.22140 0.95527 1.02294 1.00333 1.19038 0.93151 0.92398 0.82556 0.93462 1.21394 1.43113 0.95117 0.95694 0.92560 1.25639 0.94201 1.02033 0.95227 1.69990 1.47423 1.37535 1.02441 0.86420 0.80633 0.82214 0.78159 1.20171 1.20445 1.15758 1.57449 1.70413 1.21033 1.33187 1.21519 1.02067 0.79509 1.01885 1.01960 0.74181 0.73018 0.72867 1.93517 1.68592 1.59036 1.74894 1.93543 1.74498 1.57300 1.72416 1.31963 1.24250 1.07206 1.18376 1.23142 0.86311 0.99342 0.85008 1.68087 1.10670 1.11902 1.29382 1.23699 0.91277 0.87690 0.93035 1.18266 1.02315 0.90112 0.99047 1.23239 0.97607 0.96672 0.89561 1.76199 1.19072 0.98357 1.23474 1.78939 1.05488 1.17873 1.02337 1.47824 1.31915 1.11770 1.12767 0.64194 1.74826 1.17790 0.95902 1.24283 1.21395 0.87289 0.91724 0.96943 0.91653 0.92665 0.93085 0.92335 0.93814 0.88900 0.89750 0.78342 0.77767 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.03 71.98 0.65 -4.60 16 2 C 0.23 10.25 2.28 44.25 0.10 10.35 16 3 H 0.05 2.20 4.07 -2.38 -0.01 2.19 16 4 C -0.51 -27.72 8.82 25.60 0.23 -27.50 16 5 H 0.06 3.28 7.67 -2.91 -0.02 3.26 16 6 C 0.03 1.65 5.47 84.66 0.46 2.11 16 7 N -0.93 -57.00 13.96 21.45 0.30 -56.70 16 8 Si 0.90 44.35 27.00 68.60 1.85 46.20 16 9 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.23 -10.38 6.81 99.48 0.68 -9.71 16 12 N -0.98 -36.89 3.06 -520.44 -1.59 -38.48 16 13 C 0.09 2.93 9.39 127.77 1.20 4.13 16 14 S 2.69 97.27 5.65 -56.49 -0.32 96.95 16 15 O -0.97 -35.59 16.37 -128.00 -2.10 -37.69 16 16 O -0.99 -43.64 15.91 -128.00 -2.04 -45.67 16 17 C -0.73 -20.39 5.99 22.33 0.13 -20.25 16 18 C 0.22 5.05 10.68 84.70 0.90 5.96 16 19 N -0.49 -10.36 10.35 -195.00 -2.02 -12.38 16 20 C 0.20 3.75 10.87 84.95 0.92 4.67 16 21 C -0.09 -2.09 5.89 -19.94 -0.12 -2.21 16 22 C 0.21 4.68 7.95 137.38 1.09 5.78 16 23 N -0.30 -7.82 12.31 -52.18 -0.64 -8.46 16 24 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 25 N -0.19 -2.24 7.90 37.02 0.29 -1.95 16 26 H 0.50 0.40 8.96 -347.54 -3.12 -2.72 16 27 N -0.27 -4.38 12.11 -52.12 -0.63 -5.01 16 28 C 0.06 1.54 9.31 22.68 0.21 1.75 16 29 H 0.06 2.25 6.92 -2.38 -0.02 2.24 16 30 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 35 H 0.08 2.40 6.55 -2.38 -0.02 2.39 16 36 H 0.20 3.63 7.62 -2.91 -0.02 3.61 16 37 H 0.21 2.37 7.90 -2.91 -0.02 2.35 16 38 H 0.15 4.59 7.61 -2.91 -0.02 4.57 16 Total: -1.00 -76.99 342.59 -2.61 -79.61 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.00 Total: 3.93 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.79 Total: -19.82 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -3.79 Total: -123.51 kcal Atomic # 8 Polarization: -79.23 SS G_CDS: -4.13 Total: -83.36 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.85 Total: 46.20 kcal Atomic # 16 Polarization: 97.27 SS G_CDS: -0.32 Total: 96.95 kcal Total: -76.99 -2.61 -79.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.065 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds