Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 H 1.09005 * 109.47238 * 303.41927 * 3 2 1 5 5 C 1.50692 * 109.47377 * 183.41262 * 3 2 1 6 6 H 1.08002 * 120.00675 * 239.99961 * 5 3 2 7 7 C 1.37883 * 119.99821 * 60.00013 * 5 3 2 8 8 N 1.31515 * 120.00030 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47267 * 60.00024 * 9 7 5 11 11 H 1.48500 * 109.47305 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47496 * 299.99863 * 9 7 5 13 13 N 1.46501 * 109.47204 * 63.41287 * 3 2 1 14 14 S 1.65600 * 120.00204 * 215.45034 * 13 3 2 15 15 O 1.42098 * 106.40401 * 179.21522 * 14 13 3 16 16 O 1.42102 * 106.40150 * 312.13589 * 14 13 3 17 17 C 1.76203 * 107.21963 * 65.67168 * 14 13 3 18 18 C 1.38777 * 120.32143 * 272.93776 * 17 14 13 19 19 C 1.38415 * 118.50445 * 179.77998 * 18 17 14 20 20 C 1.39286 * 119.07039 * 0.49018 * 19 18 17 21 21 C 1.48432 * 119.72041 * 179.72710 * 20 19 18 22 22 N 1.34059 * 126.67999 * 0.04854 * 21 20 19 23 23 N 1.28981 * 107.26657 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.95191 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.34150 * 179.97438 * 24 23 22 26 26 N 1.28869 * 109.31840 * 359.77203 * 24 23 22 27 27 N 1.32624 * 120.55757 * 359.74987 * 20 19 18 28 28 C 1.31761 * 121.61546 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47125 * 54.90882 * 1 2 3 30 30 H 1.08995 * 109.47565 * 294.90110 * 1 2 3 31 31 H 1.09007 * 109.46881 * 174.90605 * 1 2 3 32 32 H 1.08998 * 109.47168 * 119.99693 * 2 1 3 33 33 H 1.08996 * 109.47106 * 239.99922 * 2 1 3 34 34 H 0.96996 * 120.00325 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99742 * 35.45454 * 13 3 2 36 36 H 1.08004 * 120.74225 * 359.97438 * 18 17 14 37 37 H 1.08002 * 120.46206 * 180.23625 * 19 18 17 38 38 H 1.08003 * 119.55735 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6274 1.9737 -0.8578 5 6 3.5445 1.4435 -0.0846 6 1 4.1294 1.8953 0.7029 7 6 4.1745 0.8675 -1.1674 8 7 3.4623 0.3177 -2.1267 9 14 6.0395 0.8680 -1.2720 10 1 6.6010 0.1439 -0.1034 11 1 6.4653 0.1931 -2.5244 12 1 6.5350 2.2679 -1.2717 13 7 1.6199 2.1090 1.2352 14 16 1.2126 3.7139 1.2128 15 8 0.8384 4.0516 2.5414 16 8 2.2478 4.3808 0.5036 17 6 -0.2425 3.8692 0.2313 18 6 -0.1463 4.0279 -1.1440 19 6 -1.3137 4.1416 -1.8790 20 6 -2.5377 4.1034 -1.2155 21 6 -3.7983 4.2302 -1.9888 22 7 -3.9117 4.3840 -3.3157 23 7 -5.1708 4.4532 -3.5869 24 7 -5.8405 4.3492 -2.4925 25 1 -6.8077 4.3710 -2.4223 26 7 -5.0245 4.2071 -1.5052 27 7 -2.5864 3.9552 0.1016 28 6 -1.4909 3.8393 0.8245 29 1 -0.3633 0.5908 -0.8408 30 1 -0.3634 0.4327 0.9321 31 1 -0.3633 -1.0237 -0.0913 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.9054 -0.0871 -2.8886 35 1 1.5804 1.6101 2.0661 36 1 0.8176 4.0588 -1.6301 37 1 -1.2758 4.2624 -2.9516 38 1 -1.5693 3.7204 1.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604013092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = 61.880203 kcal Electronic energy + Delta-G solvation = -26997.115375 eV Core-core repulsion = 23003.987012 eV Total energy + Delta-G solvation = -3993.128364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.64858 -41.37483 -38.29935 -37.65416 -36.84671 -35.68388 -34.92725 -34.10044 -33.76397 -32.26137 -32.21229 -28.48566 -26.74169 -26.02528 -24.85095 -24.57569 -23.46587 -21.90077 -20.65432 -20.42437 -19.08528 -18.70822 -18.32521 -18.28245 -17.90978 -17.66234 -16.95019 -16.26052 -15.70611 -15.42993 -15.40823 -15.14307 -14.82972 -14.66519 -14.50588 -14.27120 -13.54722 -13.47142 -13.32625 -13.13554 -13.01119 -12.98647 -12.70269 -12.61228 -12.55994 -12.42800 -12.34871 -12.27897 -12.05323 -11.63859 -11.55610 -11.45269 -11.23250 -10.89562 -10.42544 -10.39375 -9.98491 -8.05133 -6.16699 -1.07745 -0.49445 -0.02811 -0.00705 0.86115 1.22970 1.47752 1.50121 1.56365 2.10249 2.17645 2.44170 2.50655 2.77772 2.82888 3.21797 3.27876 3.50258 3.72748 3.74898 3.87525 4.05342 4.26027 4.48304 4.50348 4.61807 4.64618 4.70997 4.73128 4.89657 5.15493 5.22574 5.36582 5.41827 5.49776 5.73215 5.84102 6.06742 6.32488 6.38467 6.49213 6.89410 6.94384 7.51584 8.96674 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.003542 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.093188 B = 7903.080498 C = 8685.110729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.285 3.715 4 H 0.031 0.969 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.280 1.280 13 N -1.095 6.095 14 S 2.711 3.289 15 O -0.981 6.981 16 O -0.978 6.978 17 C -0.716 4.716 18 C 0.028 3.972 19 C -0.142 4.142 20 C 0.239 3.761 21 C 0.198 3.802 22 N -0.270 5.270 23 N -0.046 5.046 24 N -0.194 5.194 25 H 0.498 0.502 26 N -0.259 5.259 27 N -0.477 5.477 28 C 0.204 3.796 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.264 0.736 35 H 0.419 0.581 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 4.989 0.715 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.180 3.820 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.856 5.856 14 S 2.799 3.201 15 O -0.972 6.972 16 O -0.968 6.968 17 C -0.805 4.805 18 C 0.001 3.999 19 C -0.165 4.165 20 C 0.100 3.900 21 C -0.082 4.082 22 N -0.144 5.144 23 N -0.041 5.041 24 N -0.046 5.046 25 H 0.358 0.642 26 N -0.113 5.113 27 N -0.187 5.187 28 C 0.044 3.956 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -18.303 5.726 0.614 19.187 hybrid contribution 1.075 -0.547 -0.353 1.257 sum -17.228 5.179 0.261 17.991 Atomic orbital electron populations 1.21743 0.96464 1.00768 1.00765 1.21714 0.94067 0.98054 1.02260 1.18340 0.92722 0.90903 0.80041 0.95127 1.21805 0.93112 1.36821 1.06206 0.92915 1.25454 1.01623 0.95000 0.95414 1.69912 1.36235 1.38564 1.10020 0.85863 0.81817 0.78018 0.77464 1.19719 1.20767 1.20604 1.55296 1.82161 1.29629 1.18559 1.01219 0.73330 0.72988 0.72560 1.93520 1.84567 1.83229 1.35838 1.93580 1.54318 1.73748 1.75166 1.32161 1.20775 1.17766 1.09752 1.21583 1.00641 0.86120 0.91525 1.22239 0.90644 1.00304 1.03298 1.18188 0.88073 0.94363 0.89355 1.23040 0.91429 1.04926 0.88847 1.76114 1.08684 1.17446 1.12157 1.78896 0.98127 1.14887 1.12158 1.47913 1.13673 1.42557 1.00422 0.64171 1.75105 1.00512 1.18739 1.16916 1.67637 1.32423 1.12997 1.05672 1.22834 0.84655 0.87015 1.01098 0.94598 0.92309 0.92988 0.93496 0.90451 0.92697 0.74516 0.82047 0.80800 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.72 71.98 0.70 -3.93 16 2 C -0.12 -4.92 5.37 30.59 0.16 -4.76 16 3 C 0.29 12.39 2.17 44.24 0.10 12.49 16 4 H 0.03 1.41 7.08 -2.38 -0.02 1.39 16 5 C -0.54 -27.61 8.84 25.60 0.23 -27.38 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 7 C 0.03 1.31 5.30 84.66 0.45 1.76 16 8 N -0.91 -47.76 11.30 21.45 0.24 -47.52 16 9 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 N -1.09 -39.19 4.93 -172.53 -0.85 -40.04 16 14 S 2.71 94.43 5.66 -56.49 -0.32 94.11 16 15 O -0.98 -34.34 17.22 -128.00 -2.20 -36.54 16 16 O -0.98 -41.81 17.17 -128.00 -2.20 -44.01 16 17 C -0.72 -21.61 5.89 22.40 0.13 -21.48 16 18 C 0.03 0.83 8.91 22.44 0.20 1.03 16 19 C -0.14 -3.77 9.74 22.56 0.22 -3.55 16 20 C 0.24 6.54 6.75 42.00 0.28 6.82 16 21 C 0.20 4.97 8.03 137.36 1.10 6.07 16 22 N -0.27 -6.53 12.21 -52.19 -0.64 -7.16 16 23 N -0.05 -0.87 13.47 37.02 0.50 -0.37 16 24 N -0.19 -2.63 7.90 37.02 0.29 -2.33 16 25 H 0.50 1.31 8.96 -347.53 -3.12 -1.80 16 26 N -0.26 -5.46 12.38 -52.14 -0.65 -6.11 16 27 N -0.48 -13.39 10.29 -184.82 -1.90 -15.29 16 28 C 0.20 5.55 10.68 84.71 0.90 6.46 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.68 7.85 -2.39 -0.02 1.67 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 3.64 5.99 -2.39 -0.01 3.63 16 34 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.42 12.84 8.84 -96.74 -0.86 11.99 16 36 H 0.16 4.89 7.69 -2.91 -0.02 4.87 16 37 H 0.17 3.91 7.88 -2.91 -0.02 3.88 16 38 H 0.20 4.44 7.55 -2.91 -0.02 4.42 16 Total: -1.00 -68.37 347.19 -4.04 -72.40 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -2.82 Total: 15.11 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.48 Total: -26.47 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -3.00 Total: -118.83 kcal Atomic # 8 Polarization: -76.15 SS G_CDS: -4.40 Total: -80.55 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 94.43 SS G_CDS: -0.32 Total: 94.11 kcal Total: -68.37 -4.04 -72.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.285 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds