Wall clock time and date at job start Tue Mar 31 2020 21:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46697 * 2 1 4 4 H 1.09007 * 109.47113 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47392 * 299.93706 * 3 2 1 6 6 H 1.08004 * 119.99531 * 115.90119 * 5 3 2 7 7 C 1.37871 * 120.00506 * 295.90707 * 5 3 2 8 8 N 1.31512 * 119.99811 * 353.47400 * 7 5 3 9 9 Si 1.86801 * 120.00200 * 173.47177 * 7 5 3 10 10 H 1.48507 * 109.47198 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47104 * 300.00158 * 9 7 5 12 12 H 1.48503 * 109.47016 * 60.00155 * 9 7 5 13 13 N 1.46494 * 109.47166 * 59.94367 * 3 2 1 14 14 S 1.65604 * 120.00100 * 95.70175 * 13 3 2 15 15 O 1.42099 * 106.40200 * 177.99333 * 14 13 3 16 16 O 1.42096 * 106.40589 * 310.91571 * 14 13 3 17 17 C 1.76209 * 107.21717 * 64.45557 * 14 13 3 18 18 C 1.38771 * 120.31609 * 269.72323 * 17 14 13 19 19 C 1.38428 * 118.50125 * 179.77971 * 18 17 14 20 20 C 1.39285 * 119.07138 * 0.48960 * 19 18 17 21 21 C 1.48431 * 119.72140 * 179.72325 * 20 19 18 22 22 N 1.34061 * 126.67814 * 0.04970 * 21 20 19 23 23 N 1.28982 * 107.26405 * 179.97438 * 22 21 20 24 24 N 1.28724 * 108.95378 * 0.02562 * 23 22 21 25 25 H 0.96996 * 125.34447 * 179.97438 * 24 23 22 26 26 N 1.28876 * 109.31808 * 359.76101 * 24 23 22 27 27 N 1.32628 * 120.55506 * 359.74968 * 20 19 18 28 28 C 1.31761 * 121.61686 * 359.97438 * 27 20 19 29 29 H 1.09003 * 109.46966 * 185.00546 * 1 2 3 30 30 H 1.09003 * 109.47246 * 305.00025 * 1 2 3 31 31 H 1.08998 * 109.47742 * 65.00407 * 1 2 3 32 32 H 1.08997 * 109.46980 * 240.00549 * 2 1 3 33 33 H 1.08998 * 109.47577 * 120.00055 * 2 1 3 34 34 H 0.96999 * 120.00613 * 355.01218 * 8 7 5 35 35 H 0.96996 * 120.00285 * 275.70083 * 13 3 2 36 36 H 1.07997 * 120.75309 * 359.97438 * 18 17 14 37 37 H 1.08002 * 120.45757 * 180.23666 * 19 18 17 38 38 H 1.07996 * 119.55295 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0005 5 6 1.5388 2.1525 -1.2312 6 1 0.8643 2.9904 -1.1344 7 6 1.9413 1.7324 -2.4811 8 7 2.8595 0.7981 -2.5967 9 14 1.1823 2.4903 -4.0105 10 1 1.7812 1.8701 -5.2197 11 1 -0.2833 2.2511 -4.0064 12 1 1.4453 3.9518 -4.0214 13 7 1.5504 2.1335 1.1954 14 16 2.5055 2.2311 2.5448 15 8 1.7762 2.9913 3.4984 16 8 2.9788 0.9154 2.7975 17 6 3.9175 3.1940 2.1158 18 6 5.0573 2.5812 1.6146 19 6 6.1432 3.3741 1.2855 20 6 6.0586 4.7511 1.4774 21 6 7.2166 5.6143 1.1352 22 7 8.3950 5.2131 0.6376 23 7 9.1231 6.2662 0.4814 24 7 8.4522 7.2980 0.8586 25 1 8.7737 8.2130 0.8424 26 7 7.2846 6.9251 1.2569 27 7 4.9522 5.2973 1.9637 28 6 3.9024 4.5666 2.2800 29 1 -0.3633 -1.0238 0.0897 30 1 -0.3634 0.5895 0.8418 31 1 -0.3634 0.4342 -0.9314 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3055 0.4558 -1.8062 35 1 0.6669 2.5338 1.1967 36 1 5.0952 1.5101 1.4814 37 1 7.0448 2.9307 0.8894 38 1 3.0187 5.0463 2.6740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:42 Heat of formation + Delta-G solvation = 83.877381 kcal Electronic energy + Delta-G solvation = -26945.342724 eV Core-core repulsion = 22953.168230 eV Total energy + Delta-G solvation = -3992.174494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.75166 -40.25458 -37.04522 -36.34586 -35.55569 -34.76669 -33.95115 -32.67472 -32.36610 -31.20901 -30.51051 -25.99477 -25.70658 -25.07330 -23.85315 -23.51831 -22.44662 -20.25642 -19.63033 -19.21763 -17.74973 -17.72261 -17.43685 -17.05367 -16.83056 -16.50475 -15.06549 -14.67180 -14.29388 -14.21384 -14.08279 -13.76982 -13.51792 -13.46051 -13.19372 -13.06229 -12.76234 -12.54408 -11.83403 -11.73529 -11.69636 -11.49166 -11.44187 -11.38069 -11.23690 -11.12979 -10.92043 -10.62443 -10.36060 -10.20242 -10.12847 -9.98327 -9.78669 -9.36030 -9.10777 -8.50778 -8.37016 -6.51372 -4.26737 0.03840 0.75909 0.87249 1.09076 1.89167 1.93288 3.08783 3.33617 3.35278 3.37452 3.54576 3.59227 3.75584 4.05560 4.39983 4.41973 4.53961 4.78293 4.81392 4.92933 5.18140 5.18977 5.21902 5.53996 5.71293 5.77867 5.93959 6.07104 6.13525 6.28047 6.32070 6.37088 6.76129 6.94036 7.12478 7.24760 7.33164 7.50264 7.57152 7.85610 7.99321 8.27508 8.64587 9.41293 10.84038 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.004186 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.879565 B = 6686.842214 C = 8385.083239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C 0.267 3.733 4 H 0.031 0.969 5 C -0.601 4.601 6 H 0.059 0.941 7 C 0.030 3.970 8 N -0.902 5.902 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.089 6.089 14 S 2.694 3.306 15 O -0.972 6.972 16 O -0.956 6.956 17 C -0.710 4.710 18 C 0.034 3.966 19 C -0.144 4.144 20 C 0.243 3.757 21 C 0.215 3.785 22 N -0.252 5.252 23 N -0.048 5.048 24 N -0.227 5.227 25 H 0.477 0.523 26 N -0.254 5.254 27 N -0.468 5.468 28 C 0.206 3.794 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.272 0.728 35 H 0.414 0.586 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 8.749 7.343 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.048 0.952 5 C -0.641 4.641 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.538 5.538 9 Si 0.891 3.109 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.851 5.851 14 S 2.779 3.221 15 O -0.962 6.962 16 O -0.946 6.946 17 C -0.796 4.796 18 C 0.007 3.993 19 C -0.167 4.167 20 C 0.104 3.896 21 C -0.066 4.066 22 N -0.126 5.126 23 N -0.043 5.043 24 N -0.074 5.074 25 H 0.332 0.668 26 N -0.106 5.106 27 N -0.178 5.178 28 C 0.046 3.954 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.720 9.254 6.382 13.637 hybrid contribution -0.050 0.464 1.083 1.179 sum 7.669 9.717 7.465 14.456 Atomic orbital electron populations 1.21507 0.96662 0.98661 1.01694 1.22032 0.96390 0.98751 1.00810 1.18658 0.93575 0.89046 0.82467 0.95185 1.21994 1.32526 1.18295 0.91265 0.92295 1.25688 0.95581 0.95358 1.01023 1.70814 1.22795 1.26297 1.33859 0.83623 0.75935 0.75579 0.75778 1.20705 1.21215 1.21549 1.55376 1.28200 1.70389 1.31117 1.01967 0.73133 0.73892 0.73105 1.93548 1.70608 1.72761 1.59325 1.93582 1.81718 1.35371 1.83897 1.32394 1.20870 1.10084 1.16273 1.21402 0.89673 1.01405 0.86774 1.22079 1.01105 0.92730 1.00809 1.17956 0.88567 0.88859 0.94252 1.23147 0.94193 0.87445 1.01812 1.76112 1.01515 1.19519 1.15483 1.78939 1.20774 0.89692 1.14865 1.47864 1.07180 1.12739 1.39570 0.66805 1.75162 1.02953 1.14326 1.18157 1.67565 0.99291 1.39784 1.11198 1.22466 0.95561 0.88421 0.88982 0.95234 0.94285 0.91830 0.90689 0.94005 0.91678 0.75113 0.82044 0.82449 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.48 37.16 0.35 -2.13 16 2 C -0.14 -2.98 5.58 -26.73 -0.15 -3.13 16 3 C 0.27 5.76 2.10 -69.09 -0.14 5.62 16 4 H 0.03 0.67 6.62 -51.92 -0.34 0.33 16 5 C -0.60 -14.51 7.54 -34.44 -0.26 -14.77 16 6 H 0.06 1.41 7.82 -52.48 -0.41 1.00 16 7 C 0.03 0.75 5.24 -17.82 -0.09 0.66 16 8 N -0.90 -24.26 12.83 55.43 0.71 -23.55 16 9 Si 1.06 23.18 29.91 -169.99 -5.08 18.09 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 N -1.09 -19.76 4.76 -5.88 -0.03 -19.78 16 14 S 2.69 45.56 5.66 -107.50 -0.61 44.95 16 15 O -0.97 -17.19 17.30 -57.17 -0.99 -18.18 16 16 O -0.96 -18.07 16.69 -57.17 -0.95 -19.03 16 17 C -0.71 -11.30 5.81 -39.38 -0.23 -11.53 16 18 C 0.03 0.52 9.03 -39.31 -0.36 0.16 16 19 C -0.14 -2.07 9.74 -39.12 -0.38 -2.45 16 20 C 0.24 3.72 6.75 -82.93 -0.56 3.16 16 21 C 0.22 3.06 8.03 -156.29 -1.26 1.80 16 22 N -0.25 -3.42 12.21 32.15 0.39 -3.03 16 23 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 24 N -0.23 -1.98 7.90 60.35 0.48 -1.51 16 25 H 0.48 1.63 8.96 -340.37 -3.05 -1.42 16 26 N -0.25 -3.16 12.38 32.17 0.40 -2.76 16 27 N -0.47 -7.47 10.29 -9.77 -0.10 -7.57 16 28 C 0.21 3.16 10.68 -17.58 -0.19 2.97 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.69 7.19 -51.93 -0.37 0.31 16 31 H 0.06 1.31 7.40 -51.93 -0.38 0.93 16 32 H 0.07 1.74 6.21 -51.93 -0.32 1.42 16 33 H 0.04 0.86 7.71 -51.93 -0.40 0.46 16 34 H 0.27 7.18 6.09 -40.82 -0.25 6.93 16 35 H 0.41 6.87 8.46 -34.47 -0.29 6.57 16 36 H 0.16 2.24 7.69 -52.49 -0.40 1.83 16 37 H 0.16 1.91 7.88 -52.49 -0.41 1.50 16 38 H 0.18 2.34 7.62 -52.49 -0.40 1.94 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -32.54 342.51 -9.34 -41.87 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.26 Total: 4.70 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.26 Total: -19.64 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 2.66 Total: -57.93 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.94 Total: -37.21 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.08 Total: 18.09 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.61 Total: 44.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.54 -9.34 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.752 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds