Wall clock time and date at job start Tue Mar 31 2020 21:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47474 * 299.99902 * 3 2 1 6 6 H 1.48504 * 109.47428 * 59.99755 * 3 2 1 7 7 C 1.37877 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00053 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00256 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99636 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00160 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47228 * 185.36924 * 13 11 10 15 15 C 1.46751 * 110.99268 * 75.96961 * 14 13 11 16 16 C 1.53423 * 108.60371 * 74.56613 * 15 14 13 17 17 H 1.09003 * 109.77024 * 303.60519 * 16 15 14 18 18 C 1.50704 * 109.77729 * 182.86850 * 16 15 14 19 19 O 1.20831 * 119.99455 * 244.99863 * 18 16 15 20 20 O 1.34229 * 120.00176 * 64.71859 * 18 16 15 21 21 O 1.43136 * 107.90298 * 63.26333 * 16 15 14 22 22 C 1.36145 * 116.67852 * 314.56446 * 21 16 15 23 23 C 1.38789 * 118.72183 * 194.82451 * 22 21 16 24 24 C 1.38346 * 120.19328 * 180.45145 * 23 22 21 25 25 F 1.35097 * 120.01723 * 180.02562 * 24 23 22 26 26 C 1.38444 * 119.96932 * 0.02562 * 24 23 22 27 27 C 1.38076 * 120.09252 * 359.89604 * 26 24 23 28 28 C 1.38947 * 121.38093 * 15.12067 * 22 21 16 29 29 H 0.96999 * 120.00256 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46712 * 60.00072 * 9 7 2 31 31 H 1.08996 * 109.47092 * 300.00314 * 9 7 2 32 32 H 0.97005 * 119.99299 * 0.02562 * 10 9 7 33 33 H 1.09006 * 109.46924 * 65.37622 * 13 11 10 34 34 H 1.08994 * 109.47213 * 305.37888 * 13 11 10 35 35 H 1.09000 * 109.62260 * 314.82559 * 15 14 13 36 36 H 1.09011 * 109.61089 * 194.29317 * 15 14 13 37 37 H 0.96694 * 117.00044 * 180.27892 * 20 18 16 38 38 H 1.08005 * 119.90479 * 0.47560 * 23 22 21 39 39 H 1.07997 * 119.95383 * 179.88511 * 26 24 23 40 40 H 1.08001 * 119.86628 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 -0.0006 14 7 2.0031 -7.2971 -0.1307 15 6 1.5490 -7.5031 -1.5109 16 6 2.7579 -7.8953 -2.3704 17 1 3.5301 -7.1300 -2.2917 18 6 2.3337 -8.0451 -3.8088 19 8 2.3890 -9.1263 -4.3453 20 8 1.8891 -6.9787 -4.4920 21 8 3.2595 -9.1433 -1.8809 22 6 3.3882 -9.2631 -0.5309 23 6 4.1477 -10.3080 -0.0234 24 6 4.2910 -10.4640 1.3438 25 9 5.0316 -11.4821 1.8339 26 6 3.6752 -9.5763 2.2094 27 6 2.9197 -8.5339 1.7103 28 6 2.7727 -8.3692 0.3368 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 3.1567 -3.4354 0.0009 33 1 3.2947 -6.0271 0.9337 34 1 3.4213 -5.9180 -0.8384 35 1 1.1114 -6.5812 -1.8938 36 1 0.8073 -8.3016 -1.5367 37 1 1.6246 -7.1249 -5.4105 38 1 4.6286 -11.0012 -0.6977 39 1 3.7857 -9.6994 3.2767 40 1 2.4412 -7.8433 2.3889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:14 Heat of formation + Delta-G solvation = -159.044881 kcal Electronic energy + Delta-G solvation = -29018.497245 eV Core-core repulsion = 24520.823267 eV Total energy + Delta-G solvation = -4497.673978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.16582 -41.93643 -40.32348 -38.95579 -37.75052 -36.60871 -36.33369 -34.23918 -32.42549 -31.65439 -30.80591 -29.63563 -27.65297 -26.45693 -24.87285 -23.14279 -22.90372 -22.39735 -20.77170 -19.78630 -18.97541 -18.38505 -17.88256 -17.55083 -17.24661 -16.62299 -16.30063 -16.13976 -15.90286 -15.67275 -15.36813 -15.15653 -15.00063 -14.75829 -14.51421 -14.13241 -13.99807 -13.59360 -13.42323 -13.39015 -12.81755 -12.68575 -12.35872 -12.03682 -11.96465 -11.89274 -11.63701 -11.58772 -11.39229 -11.01980 -10.96300 -10.93363 -10.38279 -9.88753 -9.45262 -9.11308 -8.85776 -8.80975 -8.23149 -7.98969 -6.23147 -4.30403 0.72316 0.88370 1.68862 1.82431 2.92611 3.05848 3.18590 3.19432 3.26237 3.28337 3.30188 3.88072 4.00183 4.07670 4.26338 4.29536 4.36359 4.61419 4.69670 4.77049 4.81911 4.98072 5.00685 5.13493 5.20543 5.35631 5.44374 5.48760 5.66298 5.78183 5.85400 6.05246 6.20433 6.39946 6.54820 6.94184 7.21721 7.31293 7.43364 7.45653 7.58439 7.89478 8.50370 8.69777 8.97140 9.36472 10.86948 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002908 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.227355 B = 9627.410275 C =11225.258526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.711 5.711 11 C 0.497 3.503 12 O -0.532 6.532 13 C 0.028 3.972 14 N -0.455 5.455 15 C 0.034 3.966 16 C 0.058 3.942 17 H 0.117 0.883 18 C 0.495 3.505 19 O -0.491 6.491 20 O -0.501 6.501 21 O -0.283 6.283 22 C 0.118 3.882 23 C -0.164 4.164 24 C 0.120 3.880 25 F -0.135 7.135 26 C -0.165 4.165 27 C -0.051 4.051 28 C 0.021 3.979 29 H 0.266 0.734 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.390 0.610 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.421 0.579 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -17.819 -1.914 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.410 6.410 13 C -0.100 4.100 14 N -0.169 5.169 15 C -0.094 4.094 16 C -0.002 4.002 17 H 0.135 0.865 18 C 0.335 3.665 19 O -0.377 6.377 20 O -0.314 6.314 21 O -0.196 6.196 22 C 0.070 3.930 23 C -0.184 4.184 24 C 0.100 3.900 25 F -0.113 7.113 26 C -0.184 4.184 27 C -0.071 4.071 28 C -0.076 4.076 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.223 0.777 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.282 0.718 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.908 -18.152 -1.514 19.857 hybrid contribution 1.393 0.831 -0.997 1.904 sum 9.301 -17.321 -2.511 19.820 Atomic orbital electron populations 1.69977 1.06106 1.27280 1.48802 1.24948 0.94910 0.99478 0.94647 0.86368 0.79822 0.82958 0.77798 1.19628 1.20789 1.20777 1.21245 0.93291 0.90398 1.53324 0.91837 1.19123 0.88195 0.81758 0.97843 1.46462 1.11239 1.05920 1.72457 1.20095 0.89393 0.83942 0.78574 1.90698 1.16206 1.84495 1.49565 1.22422 0.95381 0.88095 1.04123 1.58721 1.37417 1.00251 1.20549 1.23037 0.94696 1.06312 0.85345 1.22357 1.00796 0.87002 0.90011 0.86522 1.22191 0.74344 0.81955 0.88038 1.90776 1.49362 1.27789 1.69743 1.84483 1.76349 1.38970 1.31560 1.86287 1.80559 1.34084 1.18662 1.18564 0.95398 0.97247 0.81836 1.20202 1.03374 1.00754 0.94029 1.17170 0.94485 0.87256 0.91065 1.91517 1.74464 1.57240 1.88087 1.20997 1.00854 0.96032 1.00542 1.20764 0.96293 0.97078 0.92946 1.18855 0.98351 0.96398 0.93955 0.92442 0.95442 0.95417 0.77729 0.87100 0.91229 0.85723 0.87677 0.71802 0.83663 0.83959 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.08 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.01 9.28 -34.44 -0.32 -14.33 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.25 6.23 5.43 -5.19 -0.03 6.20 16 10 N -0.71 -13.39 5.55 -61.47 -0.34 -13.73 16 11 C 0.50 8.67 7.34 -10.99 -0.08 8.59 16 12 O -0.53 -11.53 15.59 5.55 0.09 -11.45 16 13 C 0.03 0.34 5.29 -4.97 -0.03 0.32 16 14 N -0.45 -5.72 4.13 -172.14 -0.71 -6.44 16 15 C 0.03 0.41 4.99 -3.69 -0.02 0.40 16 16 C 0.06 0.63 3.34 -27.66 -0.09 0.54 16 17 H 0.12 1.07 6.56 -51.93 -0.34 0.73 16 18 C 0.50 5.46 7.68 36.01 0.28 5.73 16 19 O -0.49 -6.84 17.28 -25.42 -0.44 -7.28 16 20 O -0.50 -4.29 13.42 -39.25 -0.53 -4.82 16 21 O -0.28 -3.47 9.60 -39.94 -0.38 -3.85 16 22 C 0.12 1.34 6.47 -39.11 -0.25 1.09 16 23 C -0.16 -1.70 9.92 -39.34 -0.39 -2.09 16 24 C 0.12 1.19 7.30 -39.47 -0.29 0.90 16 25 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 26 C -0.16 -1.46 10.01 -39.56 -0.40 -1.86 16 27 C -0.05 -0.50 9.27 -39.32 -0.36 -0.87 16 28 C 0.02 0.24 5.09 -83.54 -0.43 -0.18 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.39 6.15 8.32 -40.82 -0.34 5.81 16 33 H 0.11 1.12 7.45 -51.93 -0.39 0.74 16 34 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 35 H 0.12 1.65 6.92 -51.93 -0.36 1.29 16 36 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.42 1.70 9.10 45.56 0.41 2.11 16 38 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -34.07 353.06 -7.16 -41.23 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.41 Total: 5.66 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.50 Total: 6.05 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.32 Total: -44.61 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.26 Total: -27.40 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.07 -7.16 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.819 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds