Wall clock time and date at job start Tue Mar 31 2020 21:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47474 * 299.99902 * 3 2 1 6 6 H 1.48504 * 109.47428 * 59.99755 * 3 2 1 7 7 C 1.37877 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00053 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00256 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99636 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00160 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47228 * 185.36924 * 13 11 10 15 15 C 1.46751 * 110.99268 * 75.96961 * 14 13 11 16 16 C 1.53423 * 108.60371 * 74.56613 * 15 14 13 17 17 H 1.09003 * 109.77024 * 303.60519 * 16 15 14 18 18 C 1.50704 * 109.77729 * 182.86850 * 16 15 14 19 19 O 1.20831 * 119.99455 * 244.99863 * 18 16 15 20 20 O 1.34229 * 120.00176 * 64.71859 * 18 16 15 21 21 O 1.43136 * 107.90298 * 63.26333 * 16 15 14 22 22 C 1.36145 * 116.67852 * 314.56446 * 21 16 15 23 23 C 1.38789 * 118.72183 * 194.82451 * 22 21 16 24 24 C 1.38346 * 120.19328 * 180.45145 * 23 22 21 25 25 F 1.35097 * 120.01723 * 180.02562 * 24 23 22 26 26 C 1.38444 * 119.96932 * 0.02562 * 24 23 22 27 27 C 1.38076 * 120.09252 * 359.89604 * 26 24 23 28 28 C 1.38947 * 121.38093 * 15.12067 * 22 21 16 29 29 H 0.96999 * 120.00256 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46712 * 60.00072 * 9 7 2 31 31 H 1.08996 * 109.47092 * 300.00314 * 9 7 2 32 32 H 0.97005 * 119.99299 * 0.02562 * 10 9 7 33 33 H 1.09006 * 109.46924 * 65.37622 * 13 11 10 34 34 H 1.08994 * 109.47213 * 305.37888 * 13 11 10 35 35 H 1.09000 * 109.62260 * 314.82559 * 15 14 13 36 36 H 1.09011 * 109.61089 * 194.29317 * 15 14 13 37 37 H 0.96694 * 117.00044 * 180.27892 * 20 18 16 38 38 H 1.08005 * 119.90479 * 0.47560 * 23 22 21 39 39 H 1.07997 * 119.95383 * 179.88511 * 26 24 23 40 40 H 1.08001 * 119.86628 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 -0.0006 14 7 2.0031 -7.2971 -0.1307 15 6 1.5490 -7.5031 -1.5109 16 6 2.7579 -7.8953 -2.3704 17 1 3.5301 -7.1300 -2.2917 18 6 2.3337 -8.0451 -3.8088 19 8 2.3890 -9.1263 -4.3453 20 8 1.8891 -6.9787 -4.4920 21 8 3.2595 -9.1433 -1.8809 22 6 3.3882 -9.2631 -0.5309 23 6 4.1477 -10.3080 -0.0234 24 6 4.2910 -10.4640 1.3438 25 9 5.0316 -11.4821 1.8339 26 6 3.6752 -9.5763 2.2094 27 6 2.9197 -8.5339 1.7103 28 6 2.7727 -8.3692 0.3368 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 3.1567 -3.4354 0.0009 33 1 3.2947 -6.0271 0.9337 34 1 3.4213 -5.9180 -0.8384 35 1 1.1114 -6.5812 -1.8938 36 1 0.8073 -8.3016 -1.5367 37 1 1.6246 -7.1249 -5.4105 38 1 4.6286 -11.0012 -0.6977 39 1 3.7857 -9.6994 3.2767 40 1 2.4412 -7.8433 2.3889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:14 Heat of formation + Delta-G solvation = -184.622258 kcal Electronic energy + Delta-G solvation = -29019.606364 eV Core-core repulsion = 24520.823267 eV Total energy + Delta-G solvation = -4498.783096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.94184 -42.81844 -41.19668 -40.36120 -38.55180 -37.59979 -37.21940 -36.02252 -34.31150 -32.50144 -31.60163 -30.83021 -29.09922 -27.67467 -25.88266 -24.50752 -23.87100 -23.50145 -21.82370 -21.12554 -19.88555 -19.21892 -18.85407 -18.72088 -18.41033 -17.64657 -17.38228 -17.19037 -16.95374 -16.73673 -16.67358 -16.36434 -16.07956 -15.91823 -15.50129 -15.36049 -15.06920 -14.75422 -14.42980 -14.21169 -14.07245 -13.98016 -13.79980 -13.59353 -12.95120 -12.86506 -12.80158 -12.75217 -12.67212 -12.43597 -12.24428 -12.19314 -11.85705 -11.41602 -10.98219 -10.78214 -10.36561 -9.77766 -9.68289 -9.07780 -8.26077 -6.41546 -0.07198 0.12059 0.82155 1.04500 1.46192 1.46425 1.59566 1.78116 1.96260 2.25746 2.37958 2.45780 2.76642 3.01516 3.09643 3.30675 3.43988 3.53499 3.75331 3.86893 3.95815 4.01697 4.10433 4.13836 4.21545 4.31296 4.53251 4.64456 4.92511 4.99724 5.10346 5.16609 5.30895 5.34089 5.38674 5.52710 5.57485 5.70110 5.75084 5.89419 6.10580 6.70261 6.74844 6.95951 7.27866 7.53956 8.85986 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002908 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.227355 B = 9627.410275 C =11225.258526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.579 6.579 13 C 0.042 3.958 14 N -0.470 5.470 15 C 0.039 3.961 16 C 0.062 3.938 17 H 0.139 0.861 18 C 0.503 3.497 19 O -0.525 6.525 20 O -0.496 6.496 21 O -0.297 6.297 22 C 0.107 3.893 23 C -0.167 4.167 24 C 0.118 3.882 25 F -0.137 7.137 26 C -0.152 4.152 27 C -0.051 4.051 28 C 0.014 3.986 29 H 0.267 0.733 30 H -0.010 1.010 31 H -0.012 1.012 32 H 0.409 0.591 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.440 0.560 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -17.761 -1.337 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.357 5.357 11 C 0.284 3.716 12 O -0.458 6.458 13 C -0.086 4.086 14 N -0.185 5.185 15 C -0.090 4.090 16 C 0.002 3.998 17 H 0.156 0.844 18 C 0.344 3.656 19 O -0.413 6.413 20 O -0.312 6.312 21 O -0.210 6.210 22 C 0.059 3.941 23 C -0.187 4.187 24 C 0.098 3.902 25 F -0.115 7.115 26 C -0.171 4.171 27 C -0.071 4.071 28 C -0.082 4.082 29 H 0.076 0.924 30 H 0.008 0.992 31 H 0.006 0.994 32 H 0.245 0.755 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.304 0.696 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.579 -18.114 -0.949 20.998 hybrid contribution 0.519 0.734 -1.169 1.475 sum 11.098 -17.380 -2.117 20.730 Atomic orbital electron populations 1.70135 1.08198 1.28368 1.50251 1.26003 0.95698 1.03739 0.94087 0.85179 0.79244 0.77715 0.77494 1.17537 1.20716 1.20757 1.21661 0.94354 0.90586 1.52369 0.89717 1.18513 0.88601 0.84087 0.94222 1.46144 1.11271 1.05326 1.72982 1.21002 0.89720 0.84467 0.76397 1.90682 1.18815 1.85166 1.51181 1.22342 0.93781 0.85511 1.06933 1.58641 1.38294 1.00795 1.20815 1.22872 0.95147 1.05251 0.85680 1.22410 1.00678 0.87168 0.89517 0.84416 1.22229 0.73525 0.81701 0.88131 1.90764 1.50996 1.29054 1.70522 1.84456 1.75678 1.37946 1.33070 1.86269 1.80763 1.34740 1.19272 1.18652 0.96099 0.97773 0.81527 1.20313 1.03212 1.00597 0.94531 1.17265 0.94535 0.87369 0.91033 1.91516 1.74545 1.57391 1.88056 1.21221 0.99402 0.94848 1.01654 1.20894 0.96276 0.97507 0.92376 1.18887 0.98692 0.96101 0.94531 0.92377 0.99228 0.99419 0.75535 0.84248 0.88101 0.87205 0.88449 0.69552 0.83137 0.81526 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 40.67 29.54 68.60 2.03 42.69 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -28.27 9.28 25.60 0.24 -28.03 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.86 16 9 C 0.27 13.72 5.43 85.63 0.46 14.19 16 10 N -0.71 -26.22 5.55 -466.79 -2.59 -28.81 16 11 C 0.50 17.12 7.34 87.66 0.64 17.77 16 12 O -0.58 -25.71 15.59 -3.04 -0.05 -25.76 16 13 C 0.04 0.93 5.29 85.56 0.45 1.38 16 14 N -0.47 -11.21 4.13 -698.54 -2.89 -14.10 16 15 C 0.04 0.92 4.99 86.47 0.43 1.35 16 16 C 0.06 1.27 3.34 29.99 0.10 1.37 16 17 H 0.14 2.19 6.56 -2.39 -0.02 2.17 16 18 C 0.50 10.75 7.68 71.24 0.55 11.30 16 19 O -0.52 -14.52 17.28 28.32 0.49 -14.03 16 20 O -0.50 -8.02 13.42 -51.41 -0.69 -8.71 16 21 O -0.30 -6.97 9.60 -76.32 -0.73 -7.70 16 22 C 0.11 2.28 6.47 22.57 0.15 2.43 16 23 C -0.17 -3.19 9.92 22.43 0.22 -2.97 16 24 C 0.12 2.06 7.30 22.34 0.16 2.23 16 25 F -0.14 -2.51 17.27 44.97 0.78 -1.73 16 26 C -0.15 -2.25 10.01 22.28 0.22 -2.03 16 27 C -0.05 -0.87 9.27 22.44 0.21 -0.66 16 28 C 0.01 0.30 5.09 38.22 0.19 0.49 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.41 12.04 8.32 -92.70 -0.77 11.27 16 33 H 0.14 2.32 7.45 -2.38 -0.02 2.30 16 34 H 0.10 1.63 6.36 -2.39 -0.02 1.61 16 35 H 0.11 2.93 6.92 -2.39 -0.02 2.91 16 36 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.44 3.07 9.10 -74.06 -0.67 2.40 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.12 353.06 0.82 -75.30 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.31 Total: 17.37 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 4.50 Total: 19.50 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -5.19 Total: -96.94 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.98 Total: -56.20 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -76.12 0.82 -75.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.317 kcal (2) G-P(sol) polarization free energy of solvation -76.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds