Wall clock time and date at job start Tue Mar 31 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00381 * 2 1 4 4 H 1.48504 * 109.47549 * 240.00261 * 3 2 1 5 5 H 1.48500 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47137 * 120.00355 * 3 2 1 7 7 C 1.37881 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.34766 * 120.00098 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00085 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.47468 * 174.12249 * 13 11 10 15 15 C 1.46761 * 110.99626 * 289.26375 * 14 13 11 16 16 C 1.53426 * 108.58476 * 285.50713 * 15 14 13 17 17 H 1.08999 * 109.76503 * 56.33123 * 16 15 14 18 18 C 1.50698 * 109.77713 * 177.12651 * 16 15 14 19 19 O 1.20832 * 119.99700 * 113.46308 * 18 16 15 20 20 O 1.34225 * 120.00144 * 293.46241 * 18 16 15 21 21 O 1.43138 * 107.91445 * 296.73275 * 16 15 14 22 22 C 1.36157 * 116.69701 * 45.34879 * 21 16 15 23 23 C 1.38784 * 118.73263 * 165.04592 * 22 21 16 24 24 C 1.38352 * 120.19244 * 179.80553 * 23 22 21 25 25 F 1.35094 * 120.01235 * 179.97438 * 24 23 22 26 26 C 1.38446 * 119.97387 * 359.97438 * 24 23 22 27 27 C 1.38077 * 120.08472 * 0.06793 * 26 24 23 28 28 C 1.38941 * 121.37336 * 345.00045 * 22 21 16 29 29 H 0.96998 * 119.99320 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47053 * 60.00461 * 9 7 2 31 31 H 1.08995 * 109.47521 * 300.00092 * 9 7 2 32 32 H 0.96996 * 119.99578 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.47336 * 54.11563 * 13 11 10 34 34 H 1.09006 * 109.46653 * 294.11750 * 13 11 10 35 35 H 1.09000 * 109.62073 * 45.22928 * 15 14 13 36 36 H 1.09001 * 109.61844 * 165.77059 * 15 14 13 37 37 H 0.96697 * 117.00256 * 180.02562 * 20 18 16 38 38 H 1.08003 * 119.90921 * 359.77785 * 23 22 21 39 39 H 1.08003 * 119.95811 * 180.08496 * 26 24 23 40 40 H 1.08008 * 119.86152 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 1.7535 -4.8834 -0.0015 12 8 0.5611 -5.1049 -0.0006 13 6 2.7327 -6.0289 -0.0022 14 7 2.0039 -7.2963 0.1402 15 6 1.4536 -7.4374 1.4934 16 6 2.6012 -7.7717 2.4554 17 1 3.3714 -7.0031 2.3915 18 6 2.0767 -7.8533 3.8658 19 8 2.0764 -8.9111 4.4500 20 8 1.6099 -6.7511 4.4732 21 8 3.1464 -9.0370 2.0676 22 6 3.3706 -9.2248 0.7378 23 6 4.1748 -10.2836 0.3397 24 6 4.4193 -10.5047 -1.0040 25 9 5.2030 -11.5361 -1.3873 26 6 3.8604 -9.6686 -1.9555 27 6 3.0602 -8.6132 -1.5652 28 6 2.8120 -8.3828 -0.2159 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 3.1565 -3.4356 -0.0021 33 1 3.4273 -5.9137 0.8299 34 1 3.2874 -6.0321 -0.9406 35 1 0.9828 -6.5022 1.7964 36 1 0.7182 -8.2418 1.5074 37 1 1.2844 -6.8529 5.3780 38 1 4.6114 -10.9365 1.0810 39 1 4.0503 -9.8423 -3.0044 40 1 2.6257 -7.9634 -2.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:18 Heat of formation + Delta-G solvation = -159.008941 kcal Electronic energy + Delta-G solvation = -29062.775195 eV Core-core repulsion = 24565.102776 eV Total energy + Delta-G solvation = -4497.672419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.16829 -41.93035 -40.30419 -38.98826 -37.74430 -36.58027 -36.31481 -34.25279 -32.43557 -31.63979 -30.80111 -29.63953 -27.65030 -26.44905 -24.87328 -23.14429 -22.89377 -22.38765 -20.75735 -19.79748 -18.96950 -18.38331 -17.86313 -17.54917 -17.22956 -16.61019 -16.29811 -16.12107 -15.90202 -15.65372 -15.36570 -15.18466 -14.99132 -14.75438 -14.51657 -14.14074 -14.00858 -13.58293 -13.42462 -13.38681 -12.81511 -12.68031 -12.37006 -12.02515 -11.95492 -11.88104 -11.64264 -11.58051 -11.37241 -11.06495 -10.93481 -10.90003 -10.38445 -9.87258 -9.48993 -9.12355 -8.86191 -8.80438 -8.23370 -8.00010 -6.23126 -4.30637 0.72158 0.88315 1.70491 1.84912 2.94064 3.05725 3.17414 3.20683 3.25941 3.26977 3.30752 3.90223 3.98024 4.07566 4.27970 4.29709 4.37081 4.62526 4.70229 4.78961 4.82515 4.98115 5.02322 5.13326 5.21525 5.34911 5.44596 5.52599 5.65843 5.78054 5.84939 6.07680 6.20483 6.40166 6.55666 6.94463 7.20763 7.29712 7.42800 7.48176 7.57423 7.89255 8.48982 8.68621 8.95381 9.36090 10.86878 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.002916 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.290280 B = 9600.427346 C =11145.030576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.710 5.710 11 C 0.497 3.503 12 O -0.533 6.533 13 C 0.029 3.971 14 N -0.455 5.455 15 C 0.033 3.967 16 C 0.058 3.942 17 H 0.117 0.883 18 C 0.496 3.504 19 O -0.491 6.491 20 O -0.500 6.500 21 O -0.283 6.283 22 C 0.118 3.882 23 C -0.164 4.164 24 C 0.120 3.880 25 F -0.135 7.135 26 C -0.165 4.165 27 C -0.051 4.051 28 C 0.021 3.979 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.390 0.610 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.421 0.579 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -17.625 2.021 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.360 5.360 11 C 0.280 3.720 12 O -0.411 6.411 13 C -0.100 4.100 14 N -0.170 5.170 15 C -0.095 4.095 16 C -0.002 4.002 17 H 0.134 0.866 18 C 0.335 3.665 19 O -0.377 6.377 20 O -0.313 6.313 21 O -0.196 6.196 22 C 0.070 3.930 23 C -0.184 4.184 24 C 0.100 3.900 25 F -0.113 7.113 26 C -0.185 4.185 27 C -0.071 4.071 28 C -0.076 4.076 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.282 0.718 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.812 -17.974 1.618 19.665 hybrid contribution 1.350 0.873 1.035 1.912 sum 9.162 -17.101 2.653 19.581 Atomic orbital electron populations 1.69958 1.06110 1.27514 1.48586 1.24943 0.94913 0.99454 0.94613 0.86477 0.79432 0.82302 0.78712 1.20036 1.21051 1.20062 1.21171 0.93225 0.90424 1.53622 0.91934 1.19119 0.88173 0.81705 0.97853 1.46463 1.11271 1.05915 1.72312 1.20085 0.89376 0.83983 0.78551 1.90697 1.16211 1.84489 1.49696 1.22408 0.95436 0.88025 1.04123 1.58760 1.33412 1.00077 1.24731 1.23068 0.94883 1.07031 0.84562 1.22365 1.00035 0.86654 0.91118 0.86567 1.22182 0.74929 0.81665 0.87722 1.90774 1.51041 1.30325 1.65590 1.84488 1.74194 1.37630 1.34981 1.86284 1.78788 1.33814 1.20747 1.18565 0.95226 0.97154 0.82026 1.20204 1.02561 1.00457 0.95150 1.17171 0.93698 0.87088 0.92009 1.91515 1.72018 1.56145 1.91631 1.20995 1.00995 0.96481 0.99993 1.20756 0.95912 0.96597 0.93840 1.18855 0.98312 0.96656 0.93773 0.92320 0.95411 0.95413 0.77703 0.91403 0.86977 0.85435 0.87721 0.71809 0.83662 0.83967 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.16 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.04 9.28 -34.44 -0.32 -14.36 16 8 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 9 C 0.25 6.23 5.43 -5.19 -0.03 6.20 16 10 N -0.71 -13.32 5.55 -61.47 -0.34 -13.66 16 11 C 0.50 8.63 7.27 -10.99 -0.08 8.55 16 12 O -0.53 -11.45 15.18 5.55 0.08 -11.37 16 13 C 0.03 0.35 5.28 -4.98 -0.03 0.32 16 14 N -0.45 -5.75 4.22 -172.14 -0.73 -6.48 16 15 C 0.03 0.41 4.94 -3.68 -0.02 0.39 16 16 C 0.06 0.65 3.35 -27.66 -0.09 0.56 16 17 H 0.12 1.11 6.56 -51.93 -0.34 0.77 16 18 C 0.50 5.64 7.68 36.00 0.28 5.92 16 19 O -0.49 -6.99 17.28 -25.42 -0.44 -7.42 16 20 O -0.50 -4.53 13.42 -39.24 -0.53 -5.05 16 21 O -0.28 -3.52 9.61 -39.96 -0.38 -3.91 16 22 C 0.12 1.36 6.47 -39.12 -0.25 1.11 16 23 C -0.16 -1.70 9.92 -39.34 -0.39 -2.10 16 24 C 0.12 1.18 7.30 -39.46 -0.29 0.90 16 25 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 26 C -0.17 -1.45 10.01 -39.56 -0.40 -1.84 16 27 C -0.05 -0.50 9.29 -39.32 -0.37 -0.86 16 28 C 0.02 0.24 5.11 -83.54 -0.43 -0.19 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.39 6.13 8.32 -40.82 -0.34 5.79 16 33 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 34 H 0.11 1.13 7.53 -51.93 -0.39 0.74 16 35 H 0.13 1.76 6.45 -51.93 -0.34 1.43 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.42 1.88 9.10 45.56 0.41 2.29 16 38 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -33.83 352.37 -7.17 -41.00 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.40 Total: 6.06 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.51 Total: 6.22 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.33 Total: -44.56 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.27 Total: -27.76 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.83 -7.17 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.004 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds