Wall clock time and date at job start Tue Mar 31 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00381 * 2 1 4 4 H 1.48504 * 109.47549 * 240.00261 * 3 2 1 5 5 H 1.48500 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47137 * 120.00355 * 3 2 1 7 7 C 1.37881 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.34766 * 120.00098 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00085 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.47468 * 174.12249 * 13 11 10 15 15 C 1.46761 * 110.99626 * 289.26375 * 14 13 11 16 16 C 1.53426 * 108.58476 * 285.50713 * 15 14 13 17 17 H 1.08999 * 109.76503 * 56.33123 * 16 15 14 18 18 C 1.50698 * 109.77713 * 177.12651 * 16 15 14 19 19 O 1.20832 * 119.99700 * 113.46308 * 18 16 15 20 20 O 1.34225 * 120.00144 * 293.46241 * 18 16 15 21 21 O 1.43138 * 107.91445 * 296.73275 * 16 15 14 22 22 C 1.36157 * 116.69701 * 45.34879 * 21 16 15 23 23 C 1.38784 * 118.73263 * 165.04592 * 22 21 16 24 24 C 1.38352 * 120.19244 * 179.80553 * 23 22 21 25 25 F 1.35094 * 120.01235 * 179.97438 * 24 23 22 26 26 C 1.38446 * 119.97387 * 359.97438 * 24 23 22 27 27 C 1.38077 * 120.08472 * 0.06793 * 26 24 23 28 28 C 1.38941 * 121.37336 * 345.00045 * 22 21 16 29 29 H 0.96998 * 119.99320 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47053 * 60.00461 * 9 7 2 31 31 H 1.08995 * 109.47521 * 300.00092 * 9 7 2 32 32 H 0.96996 * 119.99578 * 0.02562 * 10 9 7 33 33 H 1.08997 * 109.47336 * 54.11563 * 13 11 10 34 34 H 1.09006 * 109.46653 * 294.11750 * 13 11 10 35 35 H 1.09000 * 109.62073 * 45.22928 * 15 14 13 36 36 H 1.09001 * 109.61844 * 165.77059 * 15 14 13 37 37 H 0.96697 * 117.00256 * 180.02562 * 20 18 16 38 38 H 1.08003 * 119.90921 * 359.77785 * 23 22 21 39 39 H 1.08003 * 119.95811 * 180.08496 * 26 24 23 40 40 H 1.08008 * 119.86152 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 1.7535 -4.8834 -0.0015 12 8 0.5611 -5.1049 -0.0006 13 6 2.7327 -6.0289 -0.0022 14 7 2.0039 -7.2963 0.1402 15 6 1.4536 -7.4374 1.4934 16 6 2.6012 -7.7717 2.4554 17 1 3.3714 -7.0031 2.3915 18 6 2.0767 -7.8533 3.8658 19 8 2.0764 -8.9111 4.4500 20 8 1.6099 -6.7511 4.4732 21 8 3.1464 -9.0370 2.0676 22 6 3.3706 -9.2248 0.7378 23 6 4.1748 -10.2836 0.3397 24 6 4.4193 -10.5047 -1.0040 25 9 5.2030 -11.5361 -1.3873 26 6 3.8604 -9.6686 -1.9555 27 6 3.0602 -8.6132 -1.5652 28 6 2.8120 -8.3828 -0.2159 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 3.1565 -3.4356 -0.0021 33 1 3.4273 -5.9137 0.8299 34 1 3.2874 -6.0321 -0.9406 35 1 0.9828 -6.5022 1.7964 36 1 0.7182 -8.2418 1.5074 37 1 1.2844 -6.8529 5.3780 38 1 4.6114 -10.9365 1.0810 39 1 4.0503 -9.8423 -3.0044 40 1 2.6257 -7.9634 -2.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:18 Heat of formation + Delta-G solvation = -184.423879 kcal Electronic energy + Delta-G solvation = -29063.877270 eV Core-core repulsion = 24565.102776 eV Total energy + Delta-G solvation = -4498.774494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.94157 -42.82708 -41.20536 -40.38403 -38.55290 -37.58633 -37.22849 -36.02558 -34.31789 -32.50062 -31.59862 -30.83455 -29.09981 -27.67102 -25.89476 -24.50431 -23.87061 -23.50798 -21.81649 -21.13593 -19.89264 -19.24435 -18.84104 -18.72396 -18.40847 -17.64543 -17.38802 -17.16466 -16.95238 -16.73855 -16.66873 -16.40401 -16.09109 -15.91289 -15.50466 -15.36340 -15.07414 -14.76110 -14.43679 -14.21673 -14.06062 -13.97365 -13.79846 -13.59992 -12.97372 -12.90388 -12.80881 -12.73445 -12.61254 -12.43619 -12.24293 -12.21480 -11.85693 -11.47091 -10.96805 -10.75596 -10.37632 -9.78370 -9.68045 -9.08134 -8.25786 -6.41503 -0.07174 0.12239 0.80808 1.04389 1.46242 1.49141 1.57213 1.76566 1.96837 2.25094 2.38147 2.46342 2.74997 3.01322 3.09701 3.30760 3.43358 3.53828 3.75113 3.86499 3.95903 4.01449 4.12112 4.13127 4.21638 4.31843 4.53981 4.64742 4.92658 4.99599 5.10489 5.16330 5.30900 5.33098 5.38380 5.51999 5.57400 5.69881 5.74598 5.89243 6.10429 6.69686 6.73939 6.94809 7.27714 7.52661 8.85822 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.002916 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.290280 B = 9600.427346 C =11145.030576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.578 6.578 13 C 0.042 3.958 14 N -0.469 5.469 15 C 0.038 3.962 16 C 0.062 3.938 17 H 0.137 0.863 18 C 0.503 3.497 19 O -0.524 6.524 20 O -0.497 6.497 21 O -0.297 6.297 22 C 0.106 3.894 23 C -0.167 4.167 24 C 0.118 3.882 25 F -0.137 7.137 26 C -0.152 4.152 27 C -0.050 4.050 28 C 0.013 3.987 29 H 0.268 0.732 30 H -0.012 1.012 31 H -0.010 1.010 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.440 0.560 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -17.603 1.330 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.356 5.356 11 C 0.284 3.716 12 O -0.458 6.458 13 C -0.086 4.086 14 N -0.184 5.184 15 C -0.091 4.091 16 C 0.002 3.998 17 H 0.154 0.846 18 C 0.344 3.656 19 O -0.413 6.413 20 O -0.312 6.312 21 O -0.211 6.211 22 C 0.059 3.941 23 C -0.187 4.187 24 C 0.098 3.902 25 F -0.115 7.115 26 C -0.171 4.171 27 C -0.069 4.069 28 C -0.083 4.083 29 H 0.076 0.924 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.245 0.755 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.304 0.696 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.527 -17.972 0.938 20.850 hybrid contribution 0.469 0.781 1.239 1.538 sum 10.997 -17.191 2.177 20.523 Atomic orbital electron populations 1.70124 1.08197 1.28504 1.50088 1.26000 0.95690 1.03720 0.94035 0.85282 0.77950 0.76976 0.79472 1.18711 1.21447 1.18704 1.21607 0.94353 0.90630 1.52659 0.89731 1.18506 0.88575 0.84023 0.94239 1.46142 1.11296 1.05320 1.72877 1.20973 0.89705 0.84494 0.76415 1.90682 1.18772 1.85145 1.51232 1.22340 0.93857 0.85450 1.06926 1.58701 1.34264 1.00663 1.24806 1.22878 0.95261 1.05746 0.85175 1.22403 0.99958 0.86885 0.90525 0.84585 1.22237 0.74179 0.81456 0.87744 1.90761 1.52584 1.31520 1.66435 1.84462 1.73647 1.36592 1.36494 1.86266 1.79009 1.34361 1.21460 1.18670 0.95998 0.97768 0.81691 1.20311 1.02397 1.00273 0.95734 1.17273 0.93716 0.87182 0.92021 1.91516 1.72100 1.56299 1.91598 1.21233 0.99549 0.95275 1.01046 1.20908 0.95779 0.96968 0.93269 1.18897 0.98637 0.96326 0.94437 0.92361 0.99409 0.99186 0.75523 0.88385 0.84025 0.87230 0.88489 0.69568 0.83200 0.81436 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.98 40.58 29.54 68.60 2.03 42.61 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.55 -28.40 9.28 25.60 0.24 -28.16 16 8 H 0.08 3.86 7.60 -2.91 -0.02 3.84 16 9 C 0.27 13.73 5.43 85.63 0.46 14.20 16 10 N -0.71 -26.12 5.55 -466.79 -2.59 -28.71 16 11 C 0.50 17.06 7.27 87.66 0.64 17.69 16 12 O -0.58 -25.50 15.18 -3.05 -0.05 -25.54 16 13 C 0.04 0.92 5.28 85.56 0.45 1.38 16 14 N -0.47 -11.22 4.22 -698.53 -2.95 -14.17 16 15 C 0.04 0.93 4.94 86.47 0.43 1.35 16 16 C 0.06 1.32 3.35 29.99 0.10 1.42 16 17 H 0.14 2.30 6.56 -2.39 -0.02 2.29 16 18 C 0.50 11.23 7.68 71.24 0.55 11.78 16 19 O -0.52 -14.90 17.28 28.31 0.49 -14.41 16 20 O -0.50 -8.63 13.42 -51.37 -0.69 -9.32 16 21 O -0.30 -7.13 9.61 -76.49 -0.73 -7.87 16 22 C 0.11 2.29 6.47 22.57 0.15 2.43 16 23 C -0.17 -3.21 9.92 22.43 0.22 -2.99 16 24 C 0.12 2.05 7.30 22.35 0.16 2.21 16 25 F -0.14 -2.49 17.27 44.97 0.78 -1.72 16 26 C -0.15 -2.19 10.01 22.28 0.22 -1.97 16 27 C -0.05 -0.82 9.29 22.44 0.21 -0.61 16 28 C 0.01 0.28 5.11 38.21 0.20 0.47 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.41 12.02 8.32 -92.71 -0.77 11.24 16 33 H 0.10 1.61 6.43 -2.39 -0.02 1.60 16 34 H 0.14 2.33 7.53 -2.38 -0.02 2.31 16 35 H 0.11 3.09 6.45 -2.39 -0.02 3.08 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.44 3.55 9.10 -74.06 -0.67 2.88 16 38 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -75.68 352.37 0.74 -74.93 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.31 Total: 18.23 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.49 Total: 19.95 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -5.25 Total: -96.87 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.98 Total: -57.14 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -75.68 0.74 -74.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.492 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds