Wall clock time and date at job start Tue Mar 31 2020 20:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47043 * 2 1 4 4 C 1.50702 * 109.46638 * 239.99958 * 2 1 3 5 5 H 1.08002 * 120.00076 * 274.99698 * 4 2 1 6 6 C 1.37875 * 120.00028 * 95.00595 * 4 2 1 7 7 N 1.31515 * 119.99921 * 184.91207 * 6 4 2 8 8 Si 1.86803 * 119.99973 * 4.90928 * 6 4 2 9 9 H 1.48495 * 109.47123 * 84.83679 * 8 6 4 10 10 H 1.48500 * 109.46799 * 204.83829 * 8 6 4 11 11 H 1.48499 * 109.47002 * 324.83856 * 8 6 4 12 12 N 1.46498 * 109.47056 * 120.00221 * 2 1 3 13 13 N 1.40106 * 119.99830 * 269.99555 * 12 2 1 14 14 C 1.29729 * 120.00119 * 179.97438 * 13 12 2 15 15 C 1.47503 * 120.00233 * 180.02562 * 14 13 12 16 16 C 1.39742 * 120.08034 * 179.72814 * 15 14 13 17 17 C 1.37943 * 120.11923 * 180.29675 * 16 15 14 18 18 C 1.38421 * 120.28511 * 359.95876 * 17 16 15 19 19 F 1.35107 * 119.92438 * 180.02562 * 18 17 16 20 20 C 1.39581 * 120.15629 * 0.03815 * 18 17 16 21 21 C 1.48438 * 120.06534 * 180.02562 * 20 18 17 22 22 N 1.34054 * 126.67859 * 180.02562 * 21 20 18 23 23 N 1.28988 * 107.26832 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94295 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.33612 * 179.97438 * 24 23 22 26 26 N 1.28868 * 109.32214 * 359.73037 * 24 23 22 27 27 C 1.39140 * 119.87711 * 359.97438 * 20 18 17 28 28 Cl 1.73603 * 120.14279 * 179.97438 * 27 20 18 29 29 H 1.09000 * 109.46903 * 175.03142 * 1 2 3 30 30 H 1.08998 * 109.47166 * 295.02448 * 1 2 3 31 31 H 1.08997 * 109.46942 * 55.02741 * 1 2 3 32 32 H 0.97007 * 119.99604 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00124 * 90.00062 * 12 2 1 34 34 H 1.08006 * 120.00335 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.94061 * 0.27763 * 16 15 14 36 36 H 1.08005 * 119.85878 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1057 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6839 -0.5817 3.4342 15 6 2.9293 0.1768 4.6752 16 6 3.3891 -0.4813 5.8190 17 6 3.6130 0.2262 6.9818 18 6 3.3850 1.5908 7.0235 19 9 3.6072 2.2767 8.1661 20 6 2.9257 2.2600 5.8879 21 6 2.6823 3.7236 5.9347 22 7 2.2438 4.4949 4.9298 23 7 2.1663 5.7016 5.3790 24 7 2.5361 5.7130 6.6120 25 1 2.5692 6.4982 7.1805 26 7 2.8502 4.5168 6.9741 27 6 2.6974 1.5528 4.7116 28 17 2.1255 2.3781 3.2953 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3633 0.4347 0.9312 31 1 -0.3633 0.5890 -0.8421 32 1 2.9363 -0.1049 -4.2557 33 1 2.1800 -1.6467 1.1721 34 1 2.8639 -1.6463 3.4075 35 1 3.5693 -1.5458 5.7926 36 1 3.9681 -0.2868 7.8634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609108522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:21 Heat of formation + Delta-G solvation = 158.333196 kcal Electronic energy + Delta-G solvation = -25761.483800 eV Core-core repulsion = 21647.033941 eV Total energy + Delta-G solvation = -4114.449859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.075 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.05370 -44.55602 -39.35261 -36.58514 -36.06941 -34.65113 -34.16220 -33.61589 -31.98825 -30.81728 -30.48433 -27.42923 -25.30129 -24.94700 -24.80761 -23.35281 -22.17121 -20.44992 -20.16782 -19.35659 -17.89394 -17.55009 -17.28923 -16.73123 -16.30195 -15.77240 -15.53963 -15.14673 -14.57560 -14.44641 -14.10205 -13.63522 -13.57002 -13.34402 -12.82919 -12.55682 -12.48268 -12.36145 -12.16905 -11.64447 -11.54069 -11.40453 -11.33727 -11.16794 -11.09221 -10.97162 -10.78442 -10.67718 -10.38372 -9.89738 -9.30243 -8.99826 -8.91681 -8.82340 -8.67824 -6.97516 -6.25494 -4.28944 0.33254 0.72139 1.05360 2.06148 2.07472 2.32949 2.76570 3.23933 3.32671 3.37094 3.40730 3.56578 3.61640 3.90142 4.05973 4.29928 4.60319 4.79578 4.84445 5.00616 5.15740 5.24807 5.34580 5.55040 5.65385 5.77501 5.91281 6.10389 6.21970 6.27851 6.44479 6.54505 6.66987 6.67942 7.02594 7.24656 7.50762 8.01141 8.02805 8.33976 8.76584 9.12618 9.35817 10.86374 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003473 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.403247 B = 8059.894559 C = 9449.042811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.045 0.955 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.083 3.917 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.610 5.610 13 N -0.167 5.167 14 C -0.034 4.034 15 C -0.005 4.005 16 C -0.056 4.056 17 C -0.151 4.151 18 C 0.132 3.868 19 F -0.120 7.120 20 C -0.050 4.050 21 C 0.214 3.786 22 N -0.241 5.241 23 N -0.053 5.053 24 N -0.230 5.230 25 H 0.474 0.526 26 N -0.282 5.282 27 C 0.022 3.978 28 Cl 0.021 6.979 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.268 0.732 33 H 0.372 0.628 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 6.154 23.973 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.161 3.839 3 H 0.062 0.938 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.346 5.346 13 N 0.018 4.982 14 C -0.239 4.239 15 C -0.009 4.009 16 C -0.078 4.078 17 C -0.170 4.170 18 C 0.109 3.891 19 F -0.099 7.099 20 C -0.055 4.055 21 C -0.065 4.065 22 N -0.114 5.114 23 N -0.048 5.048 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.134 5.134 27 C -0.010 4.010 28 Cl 0.052 6.948 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.210 0.790 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.621 7.842 22.812 24.130 hybrid contribution 0.487 0.028 0.713 0.864 sum 1.108 7.870 23.526 24.832 Atomic orbital electron populations 1.22336 0.98995 1.00665 0.99058 1.18946 0.90142 0.93893 0.80907 0.93751 1.21025 1.45304 0.95732 0.94679 0.90427 1.24925 0.93535 0.98631 0.95128 1.69879 1.44562 1.36247 1.01728 0.86912 0.79799 0.85792 0.77519 1.19681 1.21110 1.18506 1.49447 1.70631 1.08161 1.06368 1.74624 1.02583 1.27022 0.93939 1.23259 1.11867 0.97140 0.91676 1.18327 0.99077 0.89904 0.93560 1.21125 0.95918 1.00628 0.90119 1.20964 1.04292 0.91449 1.00319 1.17385 1.00350 0.89967 0.81366 1.91558 1.91831 1.79622 1.46859 1.16938 1.08707 0.86167 0.93715 1.23231 1.01388 0.95686 0.86218 1.76545 1.15968 0.94916 1.24000 1.78999 1.14180 1.16968 0.94683 1.47769 1.41406 1.08794 1.09608 0.67201 1.75050 1.21150 0.91475 1.25741 1.20955 0.98552 0.92298 0.89199 1.98489 1.85102 1.76486 1.34759 0.93459 0.95228 0.92956 0.92170 0.79050 0.86843 0.83337 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.50 37.16 0.35 -2.87 16 2 C 0.26 6.14 2.89 -69.08 -0.20 5.94 16 3 H 0.04 1.10 5.29 -51.93 -0.27 0.83 16 4 C -0.53 -14.12 9.08 -34.44 -0.31 -14.43 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 8 Si 0.87 21.26 26.99 -169.99 -4.59 16.67 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -6.13 6.82 56.52 0.39 -5.75 16 12 N -0.61 -12.41 6.10 -5.88 -0.04 -12.45 16 13 N -0.17 -3.09 8.05 32.16 0.26 -2.84 16 14 C -0.03 -0.50 10.74 -14.67 -0.16 -0.66 16 15 C -0.01 -0.07 5.87 -105.05 -0.62 -0.68 16 16 C -0.06 -0.52 9.77 -39.13 -0.38 -0.90 16 17 C -0.15 -1.33 9.99 -39.62 -0.40 -1.73 16 18 C 0.13 1.51 7.28 -39.01 -0.28 1.23 16 19 F -0.12 -1.40 15.81 2.25 0.04 -1.37 16 20 C -0.05 -0.68 5.88 -104.86 -0.62 -1.30 16 21 C 0.21 3.03 7.84 -156.30 -1.23 1.80 16 22 N -0.24 -3.64 9.88 32.15 0.32 -3.33 16 23 N -0.05 -0.66 13.47 60.35 0.81 0.15 16 24 N -0.23 -2.12 7.90 60.35 0.48 -1.64 16 25 H 0.47 1.85 8.96 -340.37 -3.05 -1.20 16 26 N -0.28 -3.38 11.08 32.17 0.36 -3.02 16 27 C 0.02 0.33 6.37 -38.74 -0.25 0.08 16 28 Cl 0.02 0.38 22.95 -51.86 -1.19 -0.81 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.37 7.01 8.60 -182.60 -1.57 5.44 16 34 H 0.11 1.40 8.02 -52.48 -0.42 0.98 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -32.47 335.69 -8.91 -41.38 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.00 Total: -1.22 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -4.18 Total: -11.32 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 2.96 Total: -48.39 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.67 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.19 Total: -0.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.47 -8.91 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609108522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.717 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds