Wall clock time and date at job start Tue Mar 31 2020 20:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47043 * 2 1 4 4 C 1.50702 * 109.46638 * 239.99958 * 2 1 3 5 5 H 1.08002 * 120.00076 * 274.99698 * 4 2 1 6 6 C 1.37875 * 120.00028 * 95.00595 * 4 2 1 7 7 N 1.31515 * 119.99921 * 184.91207 * 6 4 2 8 8 Si 1.86803 * 119.99973 * 4.90928 * 6 4 2 9 9 H 1.48495 * 109.47123 * 84.83679 * 8 6 4 10 10 H 1.48500 * 109.46799 * 204.83829 * 8 6 4 11 11 H 1.48499 * 109.47002 * 324.83856 * 8 6 4 12 12 N 1.46498 * 109.47056 * 120.00221 * 2 1 3 13 13 N 1.40106 * 119.99830 * 269.99555 * 12 2 1 14 14 C 1.29729 * 120.00119 * 179.97438 * 13 12 2 15 15 C 1.47503 * 120.00233 * 180.02562 * 14 13 12 16 16 C 1.39742 * 120.08034 * 179.72814 * 15 14 13 17 17 C 1.37943 * 120.11923 * 180.29675 * 16 15 14 18 18 C 1.38421 * 120.28511 * 359.95876 * 17 16 15 19 19 F 1.35107 * 119.92438 * 180.02562 * 18 17 16 20 20 C 1.39581 * 120.15629 * 0.03815 * 18 17 16 21 21 C 1.48438 * 120.06534 * 180.02562 * 20 18 17 22 22 N 1.34054 * 126.67859 * 180.02562 * 21 20 18 23 23 N 1.28988 * 107.26832 * 179.97438 * 22 21 20 24 24 N 1.28728 * 108.94295 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.33612 * 179.97438 * 24 23 22 26 26 N 1.28868 * 109.32214 * 359.73037 * 24 23 22 27 27 C 1.39140 * 119.87711 * 359.97438 * 20 18 17 28 28 Cl 1.73603 * 120.14279 * 179.97438 * 27 20 18 29 29 H 1.09000 * 109.46903 * 175.03142 * 1 2 3 30 30 H 1.08998 * 109.47166 * 295.02448 * 1 2 3 31 31 H 1.08997 * 109.46942 * 55.02741 * 1 2 3 32 32 H 0.97007 * 119.99604 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00124 * 90.00062 * 12 2 1 34 34 H 1.08006 * 120.00335 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.94061 * 0.27763 * 16 15 14 36 36 H 1.08005 * 119.85878 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1057 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6839 -0.5817 3.4342 15 6 2.9293 0.1768 4.6752 16 6 3.3891 -0.4813 5.8190 17 6 3.6130 0.2262 6.9818 18 6 3.3850 1.5908 7.0235 19 9 3.6072 2.2767 8.1661 20 6 2.9257 2.2600 5.8879 21 6 2.6823 3.7236 5.9347 22 7 2.2438 4.4949 4.9298 23 7 2.1663 5.7016 5.3790 24 7 2.5361 5.7130 6.6120 25 1 2.5692 6.4982 7.1805 26 7 2.8502 4.5168 6.9741 27 6 2.6974 1.5528 4.7116 28 17 2.1255 2.3781 3.2953 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3633 0.4347 0.9312 31 1 -0.3633 0.5890 -0.8421 32 1 2.9363 -0.1049 -4.2557 33 1 2.1800 -1.6467 1.1721 34 1 2.8639 -1.6463 3.4075 35 1 3.5693 -1.5458 5.7926 36 1 3.9681 -0.2868 7.8634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609108522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:21 Heat of formation + Delta-G solvation = 136.017631 kcal Electronic energy + Delta-G solvation = -25762.451476 eV Core-core repulsion = 21647.033941 eV Total energy + Delta-G solvation = -4115.417535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.95609 -45.49391 -40.30059 -38.01333 -37.19314 -35.91502 -35.40750 -34.69756 -33.76193 -31.75662 -31.70643 -28.80299 -27.26247 -25.89543 -25.76635 -24.44130 -23.14848 -21.98811 -21.46618 -20.25646 -19.34956 -18.72471 -18.22409 -17.98703 -17.48010 -16.83739 -16.66909 -16.62713 -15.77396 -15.43807 -15.32068 -14.95556 -14.73340 -14.54374 -14.36893 -14.24753 -13.83987 -13.43406 -13.41416 -12.96105 -12.79321 -12.70545 -12.52145 -12.42516 -12.40400 -12.27869 -12.21381 -11.93691 -11.83903 -11.78810 -11.21848 -10.81740 -10.23640 -9.95309 -9.79059 -8.38467 -8.36992 -6.43268 -0.56845 -0.24895 0.12453 1.09961 1.22743 1.30570 1.34828 1.39237 1.43803 1.68689 2.17738 2.28082 2.50663 2.63504 2.97502 3.04366 3.13644 3.76693 3.77413 4.03473 4.06813 4.32342 4.40531 4.48416 4.53417 4.76974 4.80928 4.90295 4.96377 5.01240 5.11410 5.17906 5.42696 5.51861 5.57395 5.64507 5.68835 6.16930 6.53856 6.67518 7.07403 7.25160 7.79644 8.77877 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003473 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.403247 B = 8059.894559 C = 9449.042811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.276 3.724 3 H 0.028 0.972 4 C -0.525 4.525 5 H 0.049 0.951 6 C 0.033 3.967 7 N -0.934 5.934 8 Si 0.927 3.073 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.250 1.250 12 N -0.634 5.634 13 N -0.214 5.214 14 C 0.007 3.993 15 C -0.032 4.032 16 C -0.025 4.025 17 C -0.132 4.132 18 C 0.138 3.862 19 F -0.121 7.121 20 C -0.071 4.071 21 C 0.198 3.802 22 N -0.277 5.277 23 N -0.062 5.062 24 N -0.198 5.198 25 H 0.494 0.506 26 N -0.281 5.281 27 C 0.009 3.991 28 Cl -0.016 7.016 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.375 0.625 34 H 0.145 0.855 35 H 0.194 0.806 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 5.822 27.968 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.168 4.168 7 N -0.573 5.573 8 Si 0.751 3.249 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.174 1.174 12 N -0.370 5.370 13 N -0.025 5.025 14 C -0.202 4.202 15 C -0.035 4.035 16 C -0.046 4.046 17 C -0.151 4.151 18 C 0.114 3.886 19 F -0.099 7.099 20 C -0.076 4.076 21 C -0.081 4.081 22 N -0.149 5.149 23 N -0.057 5.057 24 N -0.049 5.049 25 H 0.354 0.646 26 N -0.134 5.134 27 C -0.023 4.023 28 Cl 0.014 6.986 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.212 0.788 34 H 0.162 0.838 35 H 0.211 0.789 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.288 7.540 26.831 27.901 hybrid contribution 0.396 0.101 -0.035 0.410 sum 1.684 7.641 26.796 27.915 Atomic orbital electron populations 1.22217 0.97863 1.00841 0.99363 1.18531 0.90869 0.92530 0.80949 0.95450 1.21264 1.44201 0.94631 0.96296 0.93313 1.25612 0.93712 1.02551 0.94884 1.69990 1.46933 1.37812 1.02531 0.86056 0.79855 0.81167 0.77795 1.20005 1.20401 1.17404 1.48747 1.73644 1.07900 1.06736 1.74702 1.06312 1.27245 0.94251 1.23942 1.06494 0.98730 0.90987 1.18515 1.01428 0.89282 0.94299 1.21612 0.92309 1.02473 0.88192 1.21445 1.02067 0.90010 1.01540 1.17663 0.99375 0.90975 0.80540 1.91563 1.91691 1.79946 1.46688 1.17097 1.09983 0.86199 0.94300 1.23465 1.01909 0.96335 0.86418 1.76536 1.17406 0.95744 1.25226 1.78928 1.14712 1.16372 0.95681 1.47819 1.39065 1.09001 1.09041 0.64635 1.74998 1.21205 0.91980 1.25225 1.21104 0.99702 0.93059 0.88428 1.98473 1.85838 1.77471 1.36858 0.93146 0.94040 0.93556 0.92079 0.78764 0.83834 0.78884 0.79155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 9.50 71.98 0.68 -5.49 16 2 C 0.28 13.08 2.89 44.25 0.13 13.20 16 3 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 4 C -0.52 -28.97 9.08 25.60 0.23 -28.74 16 5 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 6 C 0.03 1.86 5.47 84.65 0.46 2.32 16 7 N -0.93 -56.60 13.96 21.45 0.30 -56.30 16 8 Si 0.93 44.93 26.99 68.60 1.85 46.78 16 9 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.25 -11.59 6.82 99.48 0.68 -10.91 16 12 N -0.63 -25.96 6.10 -172.52 -1.05 -27.02 16 13 N -0.21 -7.84 8.05 -52.16 -0.42 -8.26 16 14 C 0.01 0.19 10.74 87.45 0.94 1.13 16 15 C -0.03 -0.73 5.87 -20.14 -0.12 -0.85 16 16 C -0.02 -0.32 9.77 22.56 0.22 -0.10 16 17 C -0.13 -1.57 9.99 22.24 0.22 -1.34 16 18 C 0.14 2.66 7.28 22.64 0.16 2.82 16 19 F -0.12 -2.40 15.81 44.97 0.71 -1.69 16 20 C -0.07 -1.81 5.88 -20.02 -0.12 -1.93 16 21 C 0.20 5.45 7.84 137.37 1.08 6.53 16 22 N -0.28 -8.41 9.88 -52.19 -0.52 -8.92 16 23 N -0.06 -1.52 13.47 37.02 0.50 -1.02 16 24 N -0.20 -3.38 7.90 37.02 0.29 -3.09 16 25 H 0.49 2.94 8.96 -347.54 -3.12 -0.18 16 26 N -0.28 -6.31 11.08 -52.14 -0.58 -6.89 16 27 C 0.01 0.26 6.37 22.81 0.15 0.41 16 28 Cl -0.02 -0.58 22.95 -2.72 -0.06 -0.64 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 33 H 0.37 14.24 8.60 -213.32 -1.83 12.41 16 34 H 0.14 2.97 8.02 -2.91 -0.02 2.95 16 35 H 0.19 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -75.00 335.69 1.27 -73.73 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.79 Total: 5.36 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.04 Total: -12.04 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -1.48 Total: -111.49 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.71 Total: -1.69 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.85 Total: 46.78 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.06 Total: -0.64 kcal Total: -75.00 1.27 -73.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609108522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.747 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds