Wall clock time and date at job start Tue Mar 31 2020 21:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47248 * 2 1 4 4 C 1.46501 * 119.99667 * 274.99638 * 3 2 1 5 5 C 1.50700 * 109.47456 * 275.00095 * 4 3 2 6 6 H 1.08001 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00061 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00391 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99804 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47416 * 59.99548 * 9 7 5 11 11 H 1.48499 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47022 * 299.99862 * 9 7 5 13 13 S 1.65597 * 120.00198 * 94.99448 * 3 2 1 14 14 O 1.42103 * 106.39977 * 156.46260 * 13 3 2 15 15 O 1.42091 * 106.40239 * 23.54501 * 13 3 2 16 16 C 1.76195 * 107.21743 * 270.00018 * 13 3 2 17 17 C 1.38307 * 120.35975 * 90.00277 * 16 13 3 18 18 N 1.31884 * 121.01940 * 179.74151 * 17 16 13 19 19 C 1.31752 * 121.85130 * 0.25077 * 18 17 16 20 20 C 1.39264 * 120.60032 * 0.02562 * 19 18 17 21 21 C 1.48463 * 120.53134 * 180.02562 * 20 19 18 22 22 N 1.34046 * 126.67207 * 179.68530 * 21 20 19 23 23 N 1.28983 * 107.26879 * 179.89759 * 22 21 20 24 24 N 1.28733 * 108.94632 * 0.37067 * 23 22 21 25 25 H 0.96999 * 125.34953 * 179.78550 * 24 23 22 26 26 N 1.28880 * 109.31298 * 359.76691 * 24 23 22 27 27 C 1.38432 * 120.36392 * 270.25297 * 16 13 3 28 28 H 1.08995 * 109.46922 * 300.00387 * 1 2 3 29 29 H 1.09000 * 109.46830 * 60.00535 * 1 2 3 30 30 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47658 * 239.99717 * 2 1 3 32 32 H 1.09000 * 109.46830 * 119.99465 * 2 1 3 33 33 H 1.09007 * 109.47372 * 35.00044 * 4 3 2 34 34 H 1.09003 * 109.47154 * 154.99677 * 4 3 2 35 35 H 0.97000 * 120.00855 * 180.02562 * 8 7 5 36 36 H 1.08002 * 119.49209 * 0.02562 * 17 16 13 37 37 H 1.07999 * 119.69992 * 179.97438 * 19 18 17 38 38 H 1.07993 * 120.83996 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8824 6 1 4.1725 1.1116 -1.3835 7 6 3.8530 2.3612 -3.0844 8 7 3.0282 3.1860 -3.6916 9 14 5.5100 1.9652 -3.8506 10 1 5.6005 0.5053 -4.1073 11 1 5.6518 2.7023 -5.1318 12 1 6.5948 2.3725 -2.9218 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7095 1.0801 2.3499 16 6 0.9554 2.9119 2.0251 17 6 0.0820 2.2343 2.8563 18 7 -1.0095 2.8159 3.3143 19 6 -1.3196 4.0574 3.0009 20 6 -0.4942 4.8047 2.1645 21 6 -0.8448 6.2038 1.8127 22 7 -0.1413 7.0325 1.0283 23 7 -0.7855 8.1486 0.9753 24 7 -1.8485 8.0523 1.6950 25 1 -2.5039 8.7554 1.8249 26 7 -1.9055 6.8747 2.2156 27 6 0.6700 4.2172 1.6628 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3618 1.8096 -1.9454 34 1 2.0922 3.1802 -1.0757 35 1 3.2799 3.5886 -4.5375 36 1 0.2994 1.2147 3.1382 37 1 -2.2226 4.4993 3.3955 38 1 1.3325 4.7686 1.0123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609224233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:28 Heat of formation + Delta-G solvation = 93.858677 kcal Electronic energy + Delta-G solvation = -27138.735879 eV Core-core repulsion = 23146.994206 eV Total energy + Delta-G solvation = -3991.741673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.68753 -40.33326 -36.80840 -36.13612 -35.30911 -34.83891 -34.04836 -32.72158 -32.62339 -31.11336 -30.03783 -26.65135 -25.43401 -25.11488 -23.72257 -23.17300 -22.51287 -21.72255 -19.58526 -18.56855 -17.76419 -17.37465 -17.10795 -16.77577 -16.59013 -16.22383 -15.56782 -15.13743 -14.42454 -14.33049 -14.24782 -13.89855 -13.43862 -13.35744 -13.06083 -12.78143 -12.53039 -12.12719 -12.04398 -11.73826 -11.71626 -11.57513 -11.45849 -11.43037 -11.37376 -11.22053 -11.01523 -10.92126 -10.52550 -10.49690 -10.25619 -9.99485 -9.85732 -9.70756 -9.27065 -8.43749 -8.14705 -6.05787 -4.10256 0.18030 0.62934 0.90162 0.96533 1.98004 2.04928 3.29756 3.32629 3.35451 3.39368 3.43726 3.63623 3.88606 4.11292 4.25123 4.45229 4.48190 4.59003 4.74150 5.02542 5.14806 5.20230 5.28457 5.33863 5.37952 5.63445 5.65947 5.70591 5.80261 5.92237 6.11393 6.20545 6.24278 6.53938 6.58345 7.18689 7.33986 7.48271 7.54284 7.90784 7.91162 8.18372 8.91662 9.55168 11.02772 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.004334 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.447544 B = 6459.018704 C = 8058.588156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 N -0.977 5.977 4 C 0.255 3.745 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.686 3.314 14 O -0.932 6.932 15 O -0.968 6.968 16 C -0.730 4.730 17 C 0.213 3.787 18 N -0.494 5.494 19 C 0.184 3.816 20 C -0.093 4.093 21 C 0.225 3.775 22 N -0.255 5.255 23 N -0.042 5.042 24 N -0.227 5.227 25 H 0.476 0.524 26 N -0.294 5.294 27 C 0.072 3.928 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 3.784 11.905 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 N -0.817 5.817 4 C 0.133 3.867 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.771 3.229 14 O -0.922 6.922 15 O -0.958 6.958 16 C -0.813 4.813 17 C 0.054 3.946 18 N -0.202 5.202 19 C 0.025 3.975 20 C -0.100 4.100 21 C -0.056 4.056 22 N -0.128 5.128 23 N -0.037 5.037 24 N -0.073 5.073 25 H 0.330 0.670 26 N -0.146 5.146 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.195 0.805 37 H 0.188 0.812 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.670 4.060 12.395 18.184 hybrid contribution 0.048 0.768 -0.869 1.161 sum -12.622 4.829 11.526 17.762 Atomic orbital electron populations 1.22287 0.97247 1.01765 1.01996 1.21253 0.93041 0.82777 1.04113 1.57464 1.80941 1.21203 1.22088 1.19144 0.97739 0.91256 0.78527 1.21414 1.01946 1.27997 1.05632 0.91998 1.24909 0.97327 0.94739 0.96843 1.69901 1.36142 1.30027 1.17241 0.86584 0.84229 0.78394 0.78423 1.20179 1.21223 1.19904 1.02441 0.73762 0.73738 0.72983 1.93633 1.57617 1.57740 1.83192 1.93511 1.82735 1.56214 1.63379 1.32704 1.26936 1.07106 1.14604 1.22769 0.86258 0.99235 0.86309 1.67934 1.18228 1.10455 1.23600 1.23155 0.96658 0.88888 0.88839 1.18242 0.98786 0.88726 1.04206 1.23287 0.89288 0.96380 0.96643 1.76241 1.23179 0.96515 1.16890 1.78998 0.95208 1.18147 1.11372 1.47735 1.18913 1.10877 1.29773 0.66966 1.74853 1.23371 0.94392 1.21988 1.21483 0.92440 0.91686 0.89967 0.93681 0.91830 0.91814 0.89089 0.90100 0.94355 0.94278 0.92579 0.80534 0.81176 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.83 6.40 -4.04 -0.03 1.80 16 3 N -0.98 -19.04 2.77 -115.66 -0.32 -19.36 16 4 C 0.25 6.08 5.10 -5.19 -0.03 6.06 16 5 C -0.53 -14.34 9.38 -34.44 -0.32 -14.67 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.69 50.61 5.66 -107.50 -0.61 50.00 16 14 O -0.93 -21.06 16.33 -57.17 -0.93 -21.99 16 15 O -0.97 -18.29 15.85 -57.17 -0.91 -19.20 16 16 C -0.73 -11.41 5.98 -39.48 -0.24 -11.65 16 17 C 0.21 2.91 9.60 -17.50 -0.17 2.74 16 18 N -0.49 -6.45 10.35 -12.98 -0.13 -6.59 16 19 C 0.18 2.20 10.87 -17.20 -0.19 2.01 16 20 C -0.09 -1.27 5.89 -104.75 -0.62 -1.89 16 21 C 0.22 2.99 7.95 -156.30 -1.24 1.74 16 22 N -0.26 -3.79 12.31 32.16 0.40 -3.40 16 23 N -0.04 -0.50 13.47 60.35 0.81 0.31 16 24 N -0.23 -1.88 7.90 60.35 0.48 -1.40 16 25 H 0.48 1.40 8.96 -340.36 -3.05 -1.65 16 26 N -0.29 -3.09 12.11 32.17 0.39 -2.70 16 27 C 0.07 1.13 9.31 -38.96 -0.36 0.77 16 28 H 0.04 0.56 7.02 -51.93 -0.36 0.19 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 32 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 33 H 0.04 0.93 8.11 -51.92 -0.42 0.51 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.18 2.06 7.62 -52.49 -0.40 1.66 16 37 H 0.17 1.54 7.90 -52.49 -0.41 1.13 16 38 H 0.17 2.77 7.62 -52.49 -0.40 2.37 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -34.46 349.33 -9.37 -43.83 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.62 Total: -2.96 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.91 Total: -13.33 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 2.36 Total: -58.02 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.84 Total: -41.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.61 Total: 50.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.46 -9.37 -43.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609224233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.685 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds