Wall clock time and date at job start Tue Mar 31 2020 21:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47248 * 2 1 4 4 C 1.46501 * 119.99667 * 274.99638 * 3 2 1 5 5 C 1.50700 * 109.47456 * 275.00095 * 4 3 2 6 6 H 1.08001 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00061 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00391 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99804 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47416 * 59.99548 * 9 7 5 11 11 H 1.48499 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47022 * 299.99862 * 9 7 5 13 13 S 1.65597 * 120.00198 * 94.99448 * 3 2 1 14 14 O 1.42103 * 106.39977 * 156.46260 * 13 3 2 15 15 O 1.42091 * 106.40239 * 23.54501 * 13 3 2 16 16 C 1.76195 * 107.21743 * 270.00018 * 13 3 2 17 17 C 1.38307 * 120.35975 * 90.00277 * 16 13 3 18 18 N 1.31884 * 121.01940 * 179.74151 * 17 16 13 19 19 C 1.31752 * 121.85130 * 0.25077 * 18 17 16 20 20 C 1.39264 * 120.60032 * 0.02562 * 19 18 17 21 21 C 1.48463 * 120.53134 * 180.02562 * 20 19 18 22 22 N 1.34046 * 126.67207 * 179.68530 * 21 20 19 23 23 N 1.28983 * 107.26879 * 179.89759 * 22 21 20 24 24 N 1.28733 * 108.94632 * 0.37067 * 23 22 21 25 25 H 0.96999 * 125.34953 * 179.78550 * 24 23 22 26 26 N 1.28880 * 109.31298 * 359.76691 * 24 23 22 27 27 C 1.38432 * 120.36392 * 270.25297 * 16 13 3 28 28 H 1.08995 * 109.46922 * 300.00387 * 1 2 3 29 29 H 1.09000 * 109.46830 * 60.00535 * 1 2 3 30 30 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47658 * 239.99717 * 2 1 3 32 32 H 1.09000 * 109.46830 * 119.99465 * 2 1 3 33 33 H 1.09007 * 109.47372 * 35.00044 * 4 3 2 34 34 H 1.09003 * 109.47154 * 154.99677 * 4 3 2 35 35 H 0.97000 * 120.00855 * 180.02562 * 8 7 5 36 36 H 1.08002 * 119.49209 * 0.02562 * 17 16 13 37 37 H 1.07999 * 119.69992 * 179.97438 * 19 18 17 38 38 H 1.07993 * 120.83996 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7887 -1.8824 6 1 4.1725 1.1116 -1.3835 7 6 3.8530 2.3612 -3.0844 8 7 3.0282 3.1860 -3.6916 9 14 5.5100 1.9652 -3.8506 10 1 5.6005 0.5053 -4.1073 11 1 5.6518 2.7023 -5.1318 12 1 6.5948 2.3725 -2.9218 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7095 1.0801 2.3499 16 6 0.9554 2.9119 2.0251 17 6 0.0820 2.2343 2.8563 18 7 -1.0095 2.8159 3.3143 19 6 -1.3196 4.0574 3.0009 20 6 -0.4942 4.8047 2.1645 21 6 -0.8448 6.2038 1.8127 22 7 -0.1413 7.0325 1.0283 23 7 -0.7855 8.1486 0.9753 24 7 -1.8485 8.0523 1.6950 25 1 -2.5039 8.7554 1.8249 26 7 -1.9055 6.8747 2.2156 27 6 0.6700 4.2172 1.6628 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3618 1.8096 -1.9454 34 1 2.0922 3.1802 -1.0757 35 1 3.2799 3.5886 -4.5375 36 1 0.2994 1.2147 3.1382 37 1 -2.2226 4.4993 3.3955 38 1 1.3325 4.7686 1.0123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609224233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:27 Heat of formation + Delta-G solvation = 66.907410 kcal Electronic energy + Delta-G solvation = -27139.904573 eV Core-core repulsion = 23146.994206 eV Total energy + Delta-G solvation = -3992.910367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.60530 -41.42080 -38.37650 -37.70205 -36.91086 -35.80092 -35.01209 -34.68772 -33.79199 -32.14597 -31.50918 -28.50072 -26.42514 -26.14752 -24.92767 -24.79960 -23.59304 -23.16256 -20.53722 -19.90709 -19.15274 -18.51332 -18.33676 -18.27095 -17.91157 -17.76634 -17.05672 -16.43746 -16.17522 -15.49834 -15.36306 -15.22771 -14.77968 -14.63752 -14.53063 -14.00918 -13.77034 -13.57489 -13.45346 -13.34528 -13.16863 -13.04308 -12.75246 -12.68820 -12.65224 -12.60940 -12.38636 -12.30766 -12.19391 -12.12245 -11.74711 -11.68751 -11.37348 -10.92411 -10.55245 -10.30140 -9.79739 -8.16416 -6.27893 -0.88585 -0.64555 -0.42968 0.02888 1.01844 1.29686 1.42849 1.46491 1.53124 1.98329 2.35068 2.38689 2.44666 2.74625 2.90496 3.13034 3.15983 3.26538 3.49357 3.59873 3.87647 4.01000 4.04067 4.18258 4.33102 4.46799 4.49960 4.56136 4.68590 4.71699 5.07186 5.13497 5.17373 5.21098 5.43322 5.53219 5.53752 5.74377 5.93639 6.13382 6.41682 6.80305 6.98002 7.40930 8.91124 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.004334 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.447544 B = 6459.018704 C = 8058.588156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.984 5.984 4 C 0.271 3.729 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.014 3.986 8 N -0.925 5.925 9 Si 0.953 3.047 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.276 1.276 13 S 2.697 3.303 14 O -0.981 6.981 15 O -0.971 6.971 16 C -0.732 4.732 17 C 0.219 3.781 18 N -0.490 5.490 19 C 0.202 3.798 20 C -0.092 4.092 21 C 0.210 3.790 22 N -0.300 5.300 23 N -0.052 5.052 24 N -0.191 5.191 25 H 0.498 0.502 26 N -0.274 5.274 27 C 0.056 3.944 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.016 0.984 35 H 0.266 0.734 36 H 0.200 0.800 37 H 0.207 0.793 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.920 3.303 13.359 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.823 5.823 4 C 0.148 3.852 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.202 1.202 13 S 2.786 3.214 14 O -0.971 6.971 15 O -0.961 6.961 16 C -0.820 4.820 17 C 0.061 3.939 18 N -0.199 5.199 19 C 0.043 3.957 20 C -0.099 4.099 21 C -0.071 4.071 22 N -0.171 5.171 23 N -0.047 5.047 24 N -0.043 5.043 25 H 0.358 0.642 26 N -0.127 5.127 27 C 0.028 3.972 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.224 0.776 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.618 3.551 13.837 20.439 hybrid contribution 0.490 1.022 -1.199 1.650 sum -14.127 4.573 12.638 19.499 Atomic orbital electron populations 1.22234 0.94887 1.03691 1.01812 1.21531 0.95097 0.80877 1.04520 1.57323 1.81640 1.22591 1.20760 1.18651 0.96121 0.90406 0.80041 1.21802 1.03167 1.27715 1.05932 0.92436 1.25707 1.00681 0.94688 0.97478 1.70004 1.37820 1.31000 1.17657 0.85678 0.79937 0.78959 0.77592 1.18677 1.20506 1.20197 1.01674 0.74055 0.73030 0.72596 1.93572 1.60494 1.59137 1.83888 1.93494 1.83395 1.56273 1.62947 1.32041 1.26292 1.07238 1.16470 1.23113 0.85731 0.99963 0.85123 1.68074 1.17605 1.10819 1.23366 1.23701 0.96840 0.88166 0.87035 1.18285 0.98119 0.89228 1.04226 1.23245 0.90063 0.96452 0.97349 1.76233 1.24821 0.97633 1.18450 1.78940 0.96088 1.17463 1.12183 1.47823 1.18169 1.10768 1.27493 0.64178 1.74810 1.21999 0.94639 1.21296 1.21378 0.93415 0.91913 0.90539 0.92532 0.93344 0.88769 0.89985 0.88384 0.95158 0.96557 0.92482 0.78344 0.77623 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.10 3.30 6.40 86.38 0.55 3.85 16 3 N -0.98 -39.25 2.77 -519.83 -1.44 -40.69 16 4 C 0.27 13.51 5.10 85.63 0.44 13.95 16 5 C -0.55 -30.48 9.38 25.60 0.24 -30.24 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.79 5.46 84.66 0.46 1.25 16 8 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 S 2.70 103.94 5.66 -56.49 -0.32 103.62 16 14 O -0.98 -46.76 16.33 -128.00 -2.09 -48.85 16 15 O -0.97 -36.29 15.85 -128.00 -2.03 -38.32 16 16 C -0.73 -22.81 5.98 22.33 0.13 -22.68 16 17 C 0.22 5.55 9.60 84.70 0.81 6.36 16 18 N -0.49 -11.35 10.35 -194.99 -2.02 -13.37 16 19 C 0.20 4.24 10.87 84.95 0.92 5.16 16 20 C -0.09 -2.42 5.89 -19.95 -0.12 -2.54 16 21 C 0.21 5.37 7.95 137.38 1.09 6.46 16 22 N -0.30 -8.96 12.31 -52.18 -0.64 -9.60 16 23 N -0.05 -1.20 13.47 37.02 0.50 -0.71 16 24 N -0.19 -2.73 7.90 37.02 0.29 -2.44 16 25 H 0.50 1.50 8.96 -347.53 -3.12 -1.62 16 26 N -0.27 -5.09 12.11 -52.13 -0.63 -5.72 16 27 C 0.06 1.80 9.31 22.68 0.21 2.01 16 28 H 0.06 1.28 7.02 -2.39 -0.02 1.26 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 32 H 0.10 2.74 6.91 -2.39 -0.02 2.72 16 33 H 0.03 1.54 8.11 -2.38 -0.02 1.52 16 34 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.20 4.06 7.62 -2.91 -0.02 4.04 16 37 H 0.21 2.82 7.90 -2.91 -0.02 2.79 16 38 H 0.15 5.25 7.62 -2.91 -0.02 5.23 16 Total: -1.00 -76.21 349.33 -2.57 -78.77 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -1.98 Total: 4.84 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.48 Total: -19.88 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -3.65 Total: -126.67 kcal Atomic # 8 Polarization: -83.05 SS G_CDS: -4.12 Total: -87.17 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 103.94 SS G_CDS: -0.32 Total: 103.62 kcal Total: -76.21 -2.57 -78.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609224233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.680 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds