Wall clock time and date at job start Tue Mar 31 2020 20:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99666 * 2 1 4 4 H 1.48491 * 109.47164 * 270.00180 * 3 2 1 5 5 H 1.48497 * 109.47162 * 30.00328 * 3 2 1 6 6 H 1.48505 * 109.46756 * 150.00016 * 3 2 1 7 7 C 1.37875 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99730 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00155 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46909 * 180.02562 * 11 10 9 13 13 S 1.81395 * 109.46634 * 180.02562 * 12 11 10 14 14 O 1.42101 * 110.54692 * 68.37822 * 13 12 11 15 15 O 1.42100 * 110.54422 * 291.62255 * 13 12 11 16 16 C 1.76203 * 104.44666 * 180.02562 * 13 12 11 17 17 C 1.38312 * 119.49240 * 89.99787 * 16 13 12 18 18 C 1.38425 * 119.28044 * 180.02562 * 17 16 13 19 19 C 1.39723 * 118.31485 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.53122 * 180.02562 * 19 18 17 21 21 N 1.34043 * 126.67551 * 359.66706 * 20 19 18 22 22 N 1.28988 * 107.27014 * 179.83514 * 21 20 19 23 23 N 1.28733 * 108.93871 * 0.42947 * 22 21 20 24 24 H 0.97002 * 125.33550 * 179.70042 * 23 22 21 25 25 N 1.28871 * 109.31896 * 359.72419 * 23 22 21 26 26 C 1.39265 * 118.93635 * 359.97438 * 19 18 17 27 27 N 1.31747 * 120.60381 * 0.02562 * 26 19 18 28 28 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47382 * 60.00097 * 9 7 2 30 30 H 1.08997 * 109.47480 * 300.00012 * 9 7 2 31 31 H 1.00898 * 110.99856 * 56.04384 * 10 9 7 32 32 H 1.08999 * 109.47015 * 60.00597 * 11 10 9 33 33 H 1.08995 * 109.46923 * 299.99928 * 11 10 9 34 34 H 1.08997 * 109.47289 * 60.00262 * 12 11 10 35 35 H 1.09004 * 109.46733 * 299.99942 * 12 11 10 36 36 H 1.07998 * 120.35951 * 0.04473 * 17 16 13 37 37 H 1.08001 * 120.84073 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.69585 * 179.72340 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.5305 -6.0429 -0.0031 13 16 1.6657 -7.6375 -0.0046 14 8 0.9973 -7.8411 -1.2420 15 8 0.9966 -7.8431 1.2320 16 6 2.9561 -8.8374 -0.0045 17 6 3.4539 -9.3018 1.1995 18 6 4.4680 -10.2440 1.1945 19 6 4.9515 -10.6907 -0.0380 20 6 6.0379 -11.7007 -0.1007 21 7 6.6600 -12.2731 0.9395 22 7 7.5333 -13.0923 0.4599 23 7 7.4870 -13.0469 -0.8258 24 1 8.0458 -13.5650 -1.4260 25 7 6.5821 -12.2048 -1.1903 26 6 4.3974 -10.1741 -1.2065 27 7 3.4330 -9.2781 -1.1525 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8412 -3.5489 0.7791 32 1 0.8803 -4.9808 -0.8922 33 1 0.8810 -4.9821 0.8877 34 1 3.1554 -5.9690 0.8869 35 1 3.1553 -5.9679 -0.8931 36 1 3.0556 -8.9335 2.1333 37 1 4.8757 -10.6236 2.1198 38 1 4.7649 -10.5074 -2.1658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609495650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:01 Heat of formation + Delta-G solvation = 99.064934 kcal Electronic energy + Delta-G solvation = -25014.177355 eV Core-core repulsion = 21022.661442 eV Total energy + Delta-G solvation = -3991.515913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.11564 -40.69720 -37.19080 -36.06555 -35.90215 -35.26798 -34.48043 -32.94056 -32.82264 -31.57977 -30.41483 -26.32318 -25.94435 -25.56989 -23.95983 -22.98358 -22.49168 -21.46223 -19.92533 -19.48731 -18.18658 -17.79014 -17.28372 -16.98477 -16.58469 -16.24590 -15.87703 -15.27492 -14.94387 -14.69741 -14.62376 -14.51520 -14.00488 -13.73056 -13.37678 -13.19518 -12.93224 -12.66921 -12.18552 -12.15068 -12.07545 -12.04917 -11.88482 -11.83241 -11.56742 -11.27043 -11.20826 -11.04244 -10.72884 -10.59758 -10.42114 -10.14532 -9.94430 -9.74488 -9.25441 -8.52267 -7.48886 -6.06636 -4.09416 -0.46709 -0.07420 0.49861 0.61175 1.55537 1.59237 2.60794 2.91141 2.97090 3.30927 3.36766 3.39836 3.45254 3.63507 3.71691 4.15490 4.28544 4.39846 4.44264 4.49263 4.55582 4.67378 4.79960 4.93966 5.03042 5.24873 5.28345 5.31077 5.40192 5.57167 5.72840 5.81508 5.87744 6.00274 7.05508 7.12797 7.31993 7.47623 7.70025 8.04640 8.24634 8.47903 8.98664 9.55538 11.04392 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020243 B = 0.001966 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.860038 B =14239.177981 C =15001.371486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.679 5.679 11 C 0.066 3.934 12 C -0.589 4.589 13 S 2.499 3.501 14 O -0.909 6.909 15 O -0.928 6.928 16 C -0.411 4.411 17 C -0.087 4.087 18 C -0.048 4.048 19 C -0.022 4.022 20 C 0.212 3.788 21 N -0.260 5.260 22 N -0.042 5.042 23 N -0.221 5.221 24 H 0.479 0.521 25 N -0.280 5.280 26 C 0.122 3.878 27 N -0.386 5.386 28 H 0.263 0.737 29 H 0.033 0.967 30 H -0.008 1.008 31 H 0.333 0.667 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.311 -27.955 0.531 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.311 5.311 11 C -0.066 4.066 12 C -0.721 4.721 13 S 2.674 3.326 14 O -0.906 6.906 15 O -0.925 6.925 16 C -0.629 4.629 17 C -0.107 4.107 18 C -0.076 4.076 19 C -0.028 4.028 20 C -0.069 4.069 21 N -0.134 5.134 22 N -0.037 5.037 23 N -0.068 5.068 24 H 0.334 0.666 25 N -0.132 5.132 26 C -0.041 4.041 27 N -0.094 5.094 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.010 0.990 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.462 -28.132 -0.662 31.194 hybrid contribution 1.577 0.310 1.095 1.945 sum 15.039 -27.822 0.433 31.630 Atomic orbital electron populations 1.69959 1.06074 1.26952 1.50483 1.25001 0.94914 0.99438 0.95233 0.86447 0.79602 0.82864 0.78152 1.20576 1.21269 1.19875 1.21132 0.93536 0.90044 1.50876 0.91844 1.19668 0.90653 0.87072 0.96386 1.60730 1.21046 1.00166 1.49151 1.21608 0.93320 0.89779 1.01854 1.30290 1.13096 1.16027 1.12698 1.05998 0.74760 0.76750 0.75088 1.93599 1.69290 1.84079 1.43639 1.93606 1.69053 1.85057 1.44743 1.33753 1.18227 1.17028 0.93942 1.22071 0.94147 0.95172 0.99339 1.21780 0.93980 0.93950 0.97908 1.18515 0.93497 0.94616 0.96141 1.23381 0.99071 0.99692 0.84725 1.76117 1.04974 1.06524 1.25747 1.78977 1.16175 1.15759 0.92815 1.47783 1.24897 1.27622 1.06455 0.66582 1.74942 1.04742 1.07052 1.26464 1.23229 0.91186 0.91758 0.97967 1.67940 1.07194 1.08178 1.26138 0.92780 0.94898 0.99000 0.85080 0.89738 0.94245 0.84821 0.83430 0.81552 0.82264 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.38 9.32 -34.44 -0.32 -14.70 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 4.83 5.44 -4.98 -0.03 4.81 16 10 N -0.68 -13.81 6.49 -115.06 -0.75 -14.55 16 11 C 0.07 1.09 5.69 -3.82 -0.02 1.07 16 12 C -0.59 -6.93 6.24 37.16 0.23 -6.69 16 13 S 2.50 30.93 5.22 -107.50 -0.56 30.37 16 14 O -0.91 -14.46 17.73 -57.54 -1.02 -15.48 16 15 O -0.93 -12.93 17.09 -57.54 -0.98 -13.92 16 16 C -0.41 -4.49 6.53 -17.50 -0.11 -4.60 16 17 C -0.09 -0.74 9.49 -39.49 -0.37 -1.12 16 18 C -0.05 -0.37 9.84 -38.96 -0.38 -0.75 16 19 C -0.02 -0.19 5.89 -104.74 -0.62 -0.81 16 20 C 0.21 1.75 7.95 -156.31 -1.24 0.51 16 21 N -0.26 -2.27 12.31 32.16 0.40 -1.88 16 22 N -0.04 -0.30 13.47 60.35 0.81 0.52 16 23 N -0.22 -0.95 7.90 60.35 0.48 -0.47 16 24 H 0.48 -0.25 8.96 -340.37 -3.05 -3.30 16 25 N -0.28 -1.88 12.11 32.17 0.39 -1.49 16 26 C 0.12 1.13 10.87 -17.21 -0.19 0.94 16 27 N -0.39 -4.48 10.03 -12.18 -0.12 -4.60 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H -0.01 -0.21 8.14 -51.93 -0.42 -0.63 16 31 H 0.33 6.19 8.72 -39.29 -0.34 5.85 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.15 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.17 1.06 7.55 -52.49 -0.40 0.66 16 37 H 0.16 0.90 7.97 -52.49 -0.42 0.48 16 38 H 0.18 1.24 7.90 -52.49 -0.41 0.83 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -37.91 355.27 -10.15 -48.06 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.70 Total: -2.68 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.15 Total: -19.87 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 1.94 Total: -48.21 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -2.00 Total: -29.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 30.93 SS G_CDS: -0.56 Total: 30.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.91 -10.15 -48.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.125 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds