Wall clock time and date at job start Tue Mar 31 2020 20:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99666 * 2 1 4 4 H 1.48491 * 109.47164 * 270.00180 * 3 2 1 5 5 H 1.48497 * 109.47162 * 30.00328 * 3 2 1 6 6 H 1.48505 * 109.46756 * 150.00016 * 3 2 1 7 7 C 1.37875 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99730 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00155 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46909 * 180.02562 * 11 10 9 13 13 S 1.81395 * 109.46634 * 180.02562 * 12 11 10 14 14 O 1.42101 * 110.54692 * 68.37822 * 13 12 11 15 15 O 1.42100 * 110.54422 * 291.62255 * 13 12 11 16 16 C 1.76203 * 104.44666 * 180.02562 * 13 12 11 17 17 C 1.38312 * 119.49240 * 89.99787 * 16 13 12 18 18 C 1.38425 * 119.28044 * 180.02562 * 17 16 13 19 19 C 1.39723 * 118.31485 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.53122 * 180.02562 * 19 18 17 21 21 N 1.34043 * 126.67551 * 359.66706 * 20 19 18 22 22 N 1.28988 * 107.27014 * 179.83514 * 21 20 19 23 23 N 1.28733 * 108.93871 * 0.42947 * 22 21 20 24 24 H 0.97002 * 125.33550 * 179.70042 * 23 22 21 25 25 N 1.28871 * 109.31896 * 359.72419 * 23 22 21 26 26 C 1.39265 * 118.93635 * 359.97438 * 19 18 17 27 27 N 1.31747 * 120.60381 * 0.02562 * 26 19 18 28 28 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47382 * 60.00097 * 9 7 2 30 30 H 1.08997 * 109.47480 * 300.00012 * 9 7 2 31 31 H 1.00898 * 110.99856 * 56.04384 * 10 9 7 32 32 H 1.08999 * 109.47015 * 60.00597 * 11 10 9 33 33 H 1.08995 * 109.46923 * 299.99928 * 11 10 9 34 34 H 1.08997 * 109.47289 * 60.00262 * 12 11 10 35 35 H 1.09004 * 109.46733 * 299.99942 * 12 11 10 36 36 H 1.07998 * 120.35951 * 0.04473 * 17 16 13 37 37 H 1.08001 * 120.84073 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.69585 * 179.72340 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.5305 -6.0429 -0.0031 13 16 1.6657 -7.6375 -0.0046 14 8 0.9973 -7.8411 -1.2420 15 8 0.9966 -7.8431 1.2320 16 6 2.9561 -8.8374 -0.0045 17 6 3.4539 -9.3018 1.1995 18 6 4.4680 -10.2440 1.1945 19 6 4.9515 -10.6907 -0.0380 20 6 6.0379 -11.7007 -0.1007 21 7 6.6600 -12.2731 0.9395 22 7 7.5333 -13.0923 0.4599 23 7 7.4870 -13.0469 -0.8258 24 1 8.0458 -13.5650 -1.4260 25 7 6.5821 -12.2048 -1.1903 26 6 4.3974 -10.1741 -1.2065 27 7 3.4330 -9.2781 -1.1525 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8412 -3.5489 0.7791 32 1 0.8803 -4.9808 -0.8922 33 1 0.8810 -4.9821 0.8877 34 1 3.1554 -5.9690 0.8869 35 1 3.1553 -5.9679 -0.8931 36 1 3.0556 -8.9335 2.1333 37 1 4.8757 -10.6236 2.1198 38 1 4.7649 -10.5074 -2.1658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609495650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:00 Heat of formation + Delta-G solvation = 66.318121 kcal Electronic energy + Delta-G solvation = -25015.597363 eV Core-core repulsion = 21022.661442 eV Total energy + Delta-G solvation = -3992.935921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.63253 -41.39771 -38.26466 -37.56571 -37.09936 -35.83294 -35.04617 -34.81338 -33.60714 -32.23970 -31.95886 -28.15870 -26.67311 -26.14905 -24.62074 -24.26361 -23.50613 -23.10959 -20.49949 -20.30475 -19.10334 -18.57398 -18.29830 -18.00635 -17.68430 -17.38149 -17.07715 -16.56603 -16.21644 -15.95759 -15.45776 -15.23331 -15.14118 -14.83129 -14.57193 -14.31205 -14.05813 -13.82564 -13.46669 -13.26061 -13.16669 -13.09598 -12.75705 -12.73766 -12.63761 -12.53905 -12.43335 -12.42613 -12.29984 -12.13804 -11.72987 -11.28892 -11.07842 -10.85667 -10.64862 -10.42656 -9.21954 -8.20926 -6.32246 -1.25265 -0.95984 -0.05142 0.00729 0.92938 1.26396 1.44179 1.45999 1.56902 1.69259 2.23974 2.35432 2.41866 2.75932 2.82666 2.90441 3.12895 3.46451 3.48215 3.57406 3.70443 3.76885 3.85658 3.95638 4.01065 4.25641 4.38634 4.43867 4.58765 4.62698 4.80850 4.83343 5.09555 5.18495 5.25221 5.49292 5.61233 6.00180 6.34103 6.37389 6.68700 6.88851 6.94890 7.38482 8.90717 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020243 B = 0.001966 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.860038 B =14239.177981 C =15001.371486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.198 3.802 10 N -0.678 5.678 11 C 0.054 3.946 12 C -0.577 4.577 13 S 2.517 3.483 14 O -0.953 6.953 15 O -0.947 6.947 16 C -0.424 4.424 17 C -0.081 4.081 18 C -0.043 4.043 19 C -0.017 4.017 20 C 0.200 3.800 21 N -0.280 5.280 22 N -0.049 5.049 23 N -0.193 5.193 24 H 0.498 0.502 25 N -0.279 5.279 26 C 0.118 3.882 27 N -0.416 5.416 28 H 0.265 0.735 29 H 0.004 0.996 30 H -0.030 1.030 31 H 0.345 0.655 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.189 0.811 37 H 0.183 0.817 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.975 -28.829 1.168 33.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.070 3.930 10 N -0.310 5.310 11 C -0.077 4.077 12 C -0.710 4.710 13 S 2.697 3.303 14 O -0.950 6.950 15 O -0.944 6.944 16 C -0.644 4.644 17 C -0.101 4.101 18 C -0.071 4.071 19 C -0.023 4.023 20 C -0.080 4.080 21 N -0.152 5.152 22 N -0.044 5.044 23 N -0.045 5.045 24 H 0.358 0.642 25 N -0.132 5.132 26 C -0.046 4.046 27 N -0.124 5.124 28 H 0.074 0.926 29 H 0.022 0.978 30 H -0.012 1.012 31 H 0.163 0.837 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.206 0.794 37 H 0.200 0.800 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 16.122 -29.018 -0.023 33.196 hybrid contribution 0.857 0.387 0.864 1.277 sum 16.979 -28.631 0.840 33.298 Atomic orbital electron populations 1.70093 1.07836 1.28056 1.51395 1.25984 0.95809 1.03499 0.94635 0.85297 0.78541 0.77862 0.78357 1.20044 1.20870 1.18482 1.21530 0.94004 0.91143 1.50698 0.91250 1.19345 0.90891 0.88803 0.93950 1.60538 1.20252 1.00301 1.49882 1.21689 0.94696 0.89541 1.01747 1.30159 1.12134 1.13468 1.15197 1.05085 0.74737 0.76810 0.73694 1.93542 1.71247 1.84869 1.45363 1.93572 1.70260 1.85467 1.45083 1.33150 1.18641 1.17643 0.94943 1.22348 0.93765 0.94773 0.99254 1.22068 0.93277 0.93173 0.98603 1.18602 0.93224 0.94215 0.96231 1.23332 0.99474 1.00174 0.85048 1.76094 1.05588 1.07169 1.26341 1.78930 1.16090 1.15730 0.93672 1.47855 1.23941 1.26501 1.06173 0.64248 1.74917 1.04950 1.07193 1.26164 1.23463 0.90712 0.91382 0.99089 1.67858 1.08351 1.09490 1.26728 0.92606 0.97828 1.01198 0.83724 0.90803 0.93700 0.81222 0.82261 0.79365 0.79984 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.54 -29.94 9.32 25.60 0.24 -29.70 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.68 16 9 C 0.20 10.43 5.44 85.56 0.47 10.89 16 10 N -0.68 -27.50 6.49 -517.94 -3.36 -30.86 16 11 C 0.05 1.80 5.69 86.31 0.49 2.29 16 12 C -0.58 -12.88 6.24 71.98 0.45 -12.43 16 13 S 2.52 61.67 5.22 -56.49 -0.29 61.38 16 14 O -0.95 -31.23 17.73 -127.65 -2.26 -33.50 16 15 O -0.95 -25.96 17.09 -127.65 -2.18 -28.14 16 16 C -0.42 -8.79 6.53 84.70 0.55 -8.24 16 17 C -0.08 -1.22 9.49 22.33 0.21 -1.00 16 18 C -0.04 -0.56 9.84 22.67 0.22 -0.34 16 19 C -0.02 -0.26 5.89 -19.94 -0.12 -0.38 16 20 C 0.20 2.91 7.95 137.38 1.09 4.00 16 21 N -0.28 -4.33 12.31 -52.18 -0.64 -4.97 16 22 N -0.05 -0.59 13.47 37.02 0.50 -0.09 16 23 N -0.19 -1.22 7.90 37.02 0.29 -0.93 16 24 H 0.50 -1.76 8.96 -347.53 -3.12 -4.88 16 25 N -0.28 -3.16 12.11 -52.13 -0.63 -3.79 16 26 C 0.12 2.03 10.87 84.95 0.92 2.95 16 27 N -0.42 -9.32 10.03 -192.45 -1.93 -11.25 16 28 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 31 H 0.34 12.48 8.72 -89.70 -0.78 11.70 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.17 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.16 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.19 1.90 7.55 -2.91 -0.02 1.88 16 37 H 0.18 1.52 7.97 -2.91 -0.02 1.49 16 38 H 0.19 2.46 7.90 -2.91 -0.02 2.44 16 Total: -1.00 -82.53 355.27 -5.96 -88.50 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -2.76 Total: 5.36 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.99 Total: -31.56 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.49 Total: -107.76 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -4.44 Total: -61.63 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 61.67 SS G_CDS: -0.29 Total: 61.38 kcal Total: -82.53 -5.96 -88.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.814 kcal (2) G-P(sol) polarization free energy of solvation -82.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds