Wall clock time and date at job start Tue Mar 31 2020 21:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00377 * 2 1 4 4 C 1.52995 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47098 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47156 * 305.00200 * 5 4 3 7 7 O 1.45200 * 109.47140 * 64.99858 * 5 4 3 8 8 C 1.34227 * 117.00166 * 210.00380 * 7 5 4 9 9 O 1.20827 * 120.00117 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99888 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.37642 * 120.12792 * 264.99577 * 11 10 8 13 13 C 1.38612 * 120.25151 * 179.74535 * 12 11 10 14 14 C 1.38656 * 120.49998 * 0.26185 * 13 12 11 15 15 C 1.37597 * 120.24937 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.13174 * 85.27102 * 11 10 8 17 17 C 1.41391 * 120.24223 * 359.97438 * 16 11 10 18 18 H 1.08007 * 119.99917 * 334.30441 * 17 16 11 19 19 C 1.39946 * 120.00125 * 154.30237 * 17 16 11 20 20 N 1.30823 * 119.99468 * 343.66622 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 163.66631 * 19 17 16 22 22 H 1.48501 * 109.47217 * 60.00126 * 21 19 17 23 23 H 1.48503 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47218 * 299.99901 * 21 19 17 25 25 C 1.50705 * 109.47440 * 184.99760 * 5 4 3 26 26 O 1.20828 * 119.99960 * 245.00301 * 25 5 4 27 27 O 1.34226 * 119.99714 * 65.00174 * 25 5 4 28 28 H 1.08992 * 109.47703 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46600 * 300.00412 * 1 2 3 30 30 H 1.09004 * 109.47626 * 59.99443 * 1 2 3 31 31 H 1.08997 * 109.46903 * 60.00045 * 3 2 1 32 32 H 1.09001 * 109.46995 * 299.99961 * 3 2 1 33 33 H 1.08997 * 109.47532 * 60.00065 * 4 3 2 34 34 H 1.08996 * 109.47285 * 299.99884 * 4 3 2 35 35 H 1.08995 * 109.47704 * 59.99778 * 10 8 7 36 36 H 1.09004 * 109.46889 * 299.99618 * 10 8 7 37 37 H 1.08006 * 119.87061 * 0.02737 * 12 11 10 38 38 H 1.07992 * 119.75161 * 180.23125 * 13 12 11 39 39 H 1.07992 * 119.87749 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.13026 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99997 * 180.02562 * 20 19 17 42 42 H 0.96701 * 117.00157 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9398 -0.0006 5 6 4.0866 3.4305 -0.0013 6 1 3.5937 3.9169 -0.8431 7 8 3.6323 4.0328 1.2394 8 6 3.2752 5.3259 1.1941 9 8 3.3405 5.9346 0.1525 10 6 2.7938 6.0187 2.4428 11 6 2.4595 7.4532 2.1242 12 6 3.3936 8.4427 2.3313 13 6 3.0906 9.7623 2.0342 14 6 1.8440 10.1020 1.5310 15 6 0.8927 9.1302 1.3216 16 6 1.1893 7.7870 1.6194 17 6 0.2199 6.7798 1.4075 18 1 0.5302 5.7615 1.2248 19 6 -1.1416 7.1021 1.4347 20 7 -1.5356 8.2333 1.9608 21 14 -2.3964 5.9174 0.7198 22 1 -2.3203 4.6213 1.4406 23 1 -3.7588 6.4888 0.8705 24 1 -2.1078 5.7004 -0.7207 25 6 5.5788 3.6015 -0.1257 26 8 6.2085 4.0911 0.7819 27 8 6.2081 3.2100 -1.2447 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8032 2.2370 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1609 1.4703 -0.8908 34 1 4.1616 1.4701 0.8891 35 1 3.5770 5.9882 3.2002 36 1 1.9046 5.5130 2.8191 37 1 4.3679 8.1893 2.7225 38 1 3.8309 10.5317 2.1963 39 1 1.6189 11.1332 1.3026 40 1 -0.0774 9.3969 0.9292 41 1 -2.4793 8.4567 1.9799 42 1 7.1658 3.3395 -1.2781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610387767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:05 Heat of formation + Delta-G solvation = -169.289768 kcal Electronic energy + Delta-G solvation = -27130.282588 eV Core-core repulsion = 23166.084783 eV Total energy + Delta-G solvation = -3964.197804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91970 -39.65069 -37.75762 -36.48036 -36.11329 -33.99745 -33.71995 -31.88801 -29.56024 -29.25456 -28.46591 -26.98628 -25.14071 -23.15199 -22.22461 -21.02370 -20.70646 -19.47988 -18.44368 -17.50718 -17.32421 -17.20133 -16.26318 -16.06029 -15.59232 -15.47188 -15.12842 -14.94924 -14.54899 -14.08949 -13.75348 -13.70701 -13.66217 -13.48221 -13.23010 -12.67373 -12.62269 -12.27653 -11.99088 -11.83624 -11.66475 -11.63926 -11.55136 -11.30906 -11.23655 -11.09229 -11.07279 -10.80340 -10.50220 -10.33280 -10.21709 -9.92079 -9.57268 -9.47692 -9.24985 -7.88298 -7.42191 -7.40099 -6.83232 -4.45424 1.39937 2.01898 2.31339 2.37002 2.64572 2.78317 2.96236 2.98795 2.99692 3.19577 3.27072 3.84074 4.45423 4.51462 4.57297 4.68590 4.91814 4.96807 4.98197 5.08734 5.25747 5.37745 5.54161 5.59366 5.69513 5.72988 5.90233 5.96991 6.23269 6.27906 6.32904 6.44551 6.60045 6.76042 6.98416 7.20747 7.32801 7.54551 7.67354 7.82970 7.94937 8.04755 8.20838 8.25187 8.54511 8.80279 8.90908 10.10949 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.004621 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.019781 B = 6057.608497 C = 8847.988028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.088 4.088 4 C -0.090 4.090 5 C 0.101 3.899 6 H 0.125 0.875 7 O -0.335 6.335 8 C 0.461 3.539 9 O -0.487 6.487 10 C -0.039 4.039 11 C -0.197 4.197 12 C -0.075 4.075 13 C -0.239 4.239 14 C -0.103 4.103 15 C -0.158 4.158 16 C 0.131 3.869 17 C -0.459 4.459 18 H 0.072 0.928 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.902 3.098 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.469 3.531 26 O -0.495 6.495 27 O -0.511 6.511 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.282 0.718 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -13.521 -3.964 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.038 6.038 3 C -0.237 4.237 4 C -0.128 4.128 5 C 0.042 3.958 6 H 0.142 0.858 7 O -0.253 6.253 8 C 0.304 3.696 9 O -0.371 6.371 10 C -0.076 4.076 11 C -0.198 4.198 12 C -0.093 4.093 13 C -0.258 4.258 14 C -0.122 4.122 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.489 4.489 18 H 0.090 0.910 19 C -0.140 4.140 20 N -0.415 5.415 21 Si 0.726 3.274 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.188 1.188 25 C 0.309 3.691 26 O -0.381 6.381 27 O -0.324 6.324 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.192 -14.004 -3.966 15.453 hybrid contribution -0.783 0.816 -0.469 1.224 sum 4.409 -13.188 -4.435 14.595 Atomic orbital electron populations 1.23395 0.93578 1.06467 1.05493 1.86682 1.08065 1.10877 1.98172 1.23395 0.98860 0.94761 1.06635 1.21355 0.94786 0.91078 1.05620 1.21919 0.87527 0.95976 0.90344 0.85769 1.86779 1.75478 1.28505 1.34554 1.24793 0.73187 0.78801 0.92843 1.90650 1.49149 1.64884 1.32459 1.20009 1.02167 0.94268 0.91153 1.19025 0.97367 0.90843 1.12609 1.20357 0.96458 0.93251 0.99273 1.20330 0.97541 0.95173 1.12745 1.20713 0.94079 0.97480 0.99884 1.21295 0.99002 0.92910 1.04530 1.17334 0.90254 0.92777 0.86739 1.19421 0.90177 0.95840 1.43447 0.90956 1.25870 0.99739 0.95677 0.92682 1.69801 1.18001 1.22156 1.31571 0.86463 0.79165 0.81048 0.80690 1.18969 1.20144 1.18847 1.23626 0.91543 0.74374 0.79556 1.90760 1.67553 1.39761 1.39995 1.84492 1.28820 1.78007 1.41056 0.88066 0.90083 0.90287 0.88477 0.89332 0.87774 0.88975 0.88946 0.87223 0.89452 0.89442 0.89394 0.86418 0.90721 0.72799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.76 101.05 1.09 0.04 16 2 S -0.26 -2.80 22.38 -107.50 -2.41 -5.20 16 3 C -0.09 -0.97 5.84 37.16 0.22 -0.75 16 4 C -0.09 -0.95 4.92 -26.73 -0.13 -1.08 16 5 C 0.10 1.39 2.46 -27.88 -0.07 1.32 16 6 H 0.12 1.74 7.16 -51.93 -0.37 1.37 16 7 O -0.33 -5.55 8.96 -45.89 -0.41 -5.96 16 8 C 0.46 9.12 7.58 36.01 0.27 9.39 16 9 O -0.49 -11.04 15.25 -18.75 -0.29 -11.33 16 10 C -0.04 -0.77 5.29 -29.04 -0.15 -0.92 16 11 C -0.20 -4.65 4.43 -103.91 -0.46 -5.11 16 12 C -0.08 -1.72 9.66 -39.66 -0.38 -2.10 16 13 C -0.24 -5.47 10.05 -39.29 -0.39 -5.86 16 14 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 15 C -0.16 -4.10 8.68 -38.87 -0.34 -4.44 16 16 C 0.13 3.40 5.56 -106.82 -0.59 2.80 16 17 C -0.46 -11.57 8.15 -37.74 -0.31 -11.87 16 18 H 0.07 1.74 6.68 -52.48 -0.35 1.39 16 19 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 20 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 21 Si 0.90 17.90 29.59 -169.99 -5.03 12.87 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C 0.47 6.54 7.63 36.01 0.27 6.81 16 26 O -0.49 -8.58 17.27 -25.39 -0.44 -9.01 16 27 O -0.51 -5.15 13.39 -39.25 -0.53 -5.67 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.10 1.16 7.82 -51.93 -0.41 0.75 16 32 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.61 8.05 -51.93 -0.42 1.19 16 36 H 0.11 2.09 7.04 -51.93 -0.37 1.73 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.41 2.35 9.10 45.56 0.41 2.76 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -31.40 378.69 -9.01 -40.41 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.76 Total: 10.10 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.47 Total: -12.82 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.66 Total: -31.98 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.41 Total: -5.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.40 -9.01 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610387767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.877 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds