Wall clock time and date at job start Tue Mar 31 2020 21:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00377 * 2 1 4 4 C 1.52995 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47098 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47156 * 305.00200 * 5 4 3 7 7 O 1.45200 * 109.47140 * 64.99858 * 5 4 3 8 8 C 1.34227 * 117.00166 * 210.00380 * 7 5 4 9 9 O 1.20827 * 120.00117 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99888 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.37642 * 120.12792 * 264.99577 * 11 10 8 13 13 C 1.38612 * 120.25151 * 179.74535 * 12 11 10 14 14 C 1.38656 * 120.49998 * 0.26185 * 13 12 11 15 15 C 1.37597 * 120.24937 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.13174 * 85.27102 * 11 10 8 17 17 C 1.41391 * 120.24223 * 359.97438 * 16 11 10 18 18 H 1.08007 * 119.99917 * 334.30441 * 17 16 11 19 19 C 1.39946 * 120.00125 * 154.30237 * 17 16 11 20 20 N 1.30823 * 119.99468 * 343.66622 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 163.66631 * 19 17 16 22 22 H 1.48501 * 109.47217 * 60.00126 * 21 19 17 23 23 H 1.48503 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47218 * 299.99901 * 21 19 17 25 25 C 1.50705 * 109.47440 * 184.99760 * 5 4 3 26 26 O 1.20828 * 119.99960 * 245.00301 * 25 5 4 27 27 O 1.34226 * 119.99714 * 65.00174 * 25 5 4 28 28 H 1.08992 * 109.47703 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46600 * 300.00412 * 1 2 3 30 30 H 1.09004 * 109.47626 * 59.99443 * 1 2 3 31 31 H 1.08997 * 109.46903 * 60.00045 * 3 2 1 32 32 H 1.09001 * 109.46995 * 299.99961 * 3 2 1 33 33 H 1.08997 * 109.47532 * 60.00065 * 4 3 2 34 34 H 1.08996 * 109.47285 * 299.99884 * 4 3 2 35 35 H 1.08995 * 109.47704 * 59.99778 * 10 8 7 36 36 H 1.09004 * 109.46889 * 299.99618 * 10 8 7 37 37 H 1.08006 * 119.87061 * 0.02737 * 12 11 10 38 38 H 1.07992 * 119.75161 * 180.23125 * 13 12 11 39 39 H 1.07992 * 119.87749 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.13026 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99997 * 180.02562 * 20 19 17 42 42 H 0.96701 * 117.00157 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9398 -0.0006 5 6 4.0866 3.4305 -0.0013 6 1 3.5937 3.9169 -0.8431 7 8 3.6323 4.0328 1.2394 8 6 3.2752 5.3259 1.1941 9 8 3.3405 5.9346 0.1525 10 6 2.7938 6.0187 2.4428 11 6 2.4595 7.4532 2.1242 12 6 3.3936 8.4427 2.3313 13 6 3.0906 9.7623 2.0342 14 6 1.8440 10.1020 1.5310 15 6 0.8927 9.1302 1.3216 16 6 1.1893 7.7870 1.6194 17 6 0.2199 6.7798 1.4075 18 1 0.5302 5.7615 1.2248 19 6 -1.1416 7.1021 1.4347 20 7 -1.5356 8.2333 1.9608 21 14 -2.3964 5.9174 0.7198 22 1 -2.3203 4.6213 1.4406 23 1 -3.7588 6.4888 0.8705 24 1 -2.1078 5.7004 -0.7207 25 6 5.5788 3.6015 -0.1257 26 8 6.2085 4.0911 0.7819 27 8 6.2081 3.2100 -1.2447 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8032 2.2370 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1609 1.4703 -0.8908 34 1 4.1616 1.4701 0.8891 35 1 3.5770 5.9882 3.2002 36 1 1.9046 5.5130 2.8191 37 1 4.3679 8.1893 2.7225 38 1 3.8309 10.5317 2.1963 39 1 1.6189 11.1332 1.3026 40 1 -0.0774 9.3969 0.9292 41 1 -2.4793 8.4567 1.9799 42 1 7.1658 3.3395 -1.2781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610387767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:04 Heat of formation + Delta-G solvation = -185.436658 kcal Electronic energy + Delta-G solvation = -27130.982770 eV Core-core repulsion = 23166.084783 eV Total energy + Delta-G solvation = -3964.897986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18354 -40.95901 -39.46846 -37.85232 -37.21684 -35.54065 -35.06996 -33.58790 -31.40314 -30.06358 -29.52119 -28.56663 -26.96212 -24.15008 -23.54247 -22.86247 -21.97299 -21.16266 -19.53438 -19.10141 -18.85913 -18.43107 -17.58622 -17.16145 -16.96617 -16.72409 -16.50609 -16.31203 -15.91695 -15.45521 -15.33754 -14.92972 -14.74673 -14.39787 -14.31271 -14.24020 -13.81864 -13.65483 -13.39439 -13.16239 -13.02672 -12.95177 -12.83513 -12.77776 -12.64920 -12.61460 -12.53681 -12.25894 -12.14559 -11.59226 -11.41739 -11.37246 -11.27563 -11.04829 -11.02973 -9.28161 -9.25648 -8.70003 -8.62864 -6.34282 0.56990 0.84254 0.95233 1.06063 1.15158 1.35628 1.46134 1.48267 1.53725 1.58692 2.02831 2.18218 2.75614 3.49497 3.50964 3.66458 3.81550 3.90502 4.02323 4.14950 4.29272 4.31645 4.32186 4.35125 4.50025 4.53252 4.65679 4.71917 4.73043 4.87338 4.89706 4.95453 5.15370 5.20990 5.32777 5.39497 5.49298 5.71869 5.99119 6.10011 6.17700 6.36235 6.65990 6.70800 6.81492 6.93808 7.05200 8.33616 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.004621 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.019781 B = 6057.608497 C = 8847.988028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.279 6.279 3 C -0.088 4.088 4 C -0.079 4.079 5 C 0.094 3.906 6 H 0.122 0.878 7 O -0.330 6.330 8 C 0.469 3.531 9 O -0.523 6.523 10 C -0.041 4.041 11 C -0.203 4.203 12 C -0.086 4.086 13 C -0.244 4.244 14 C -0.111 4.111 15 C -0.190 4.190 16 C 0.102 3.898 17 C -0.483 4.483 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.822 5.822 21 Si 0.968 3.032 22 H -0.251 1.251 23 H -0.269 1.269 24 H -0.265 1.265 25 C 0.476 3.524 26 O -0.534 6.534 27 O -0.495 6.495 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.288 0.712 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -15.378 -4.377 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.054 6.054 3 C -0.236 4.236 4 C -0.117 4.117 5 C 0.036 3.964 6 H 0.140 0.860 7 O -0.248 6.248 8 C 0.314 3.686 9 O -0.410 6.410 10 C -0.078 4.078 11 C -0.205 4.205 12 C -0.105 4.105 13 C -0.263 4.263 14 C -0.129 4.129 15 C -0.210 4.210 16 C 0.099 3.901 17 C -0.513 4.513 18 H 0.093 0.907 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.789 3.211 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.190 1.190 25 C 0.317 3.683 26 O -0.423 6.423 27 O -0.310 6.310 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 5.657 -15.886 -4.384 17.424 hybrid contribution -0.813 1.361 -0.375 1.629 sum 4.844 -14.525 -4.759 16.034 Atomic orbital electron populations 1.23480 0.91765 1.07675 1.05710 1.86704 1.10154 1.10322 1.98191 1.23348 0.98997 0.95106 1.06136 1.21368 0.94750 0.88708 1.06845 1.22259 0.87819 0.97520 0.88825 0.86042 1.86723 1.75091 1.26789 1.36168 1.24552 0.72473 0.79553 0.92051 1.90634 1.50849 1.65958 1.33563 1.20013 1.03303 0.92443 0.92014 1.19402 0.96713 0.93028 1.11329 1.20748 0.97447 0.93267 0.98991 1.20704 0.97644 0.96110 1.11799 1.20983 0.94220 0.98154 0.99593 1.21315 0.99099 0.93987 1.06570 1.17706 0.91667 0.93065 0.87615 1.19626 0.91043 0.95926 1.44680 0.90704 1.26683 1.01285 0.97319 0.92419 1.69867 1.18729 1.23802 1.32329 0.85451 0.76705 0.79331 0.79605 1.17425 1.19320 1.19017 1.23551 0.91496 0.73510 0.79716 1.90751 1.68320 1.41736 1.41507 1.84440 1.30711 1.76929 1.38889 0.86396 0.90199 0.89735 0.89789 0.89067 0.85536 0.88632 0.86321 0.86792 0.86919 0.86677 0.87428 0.88182 0.90183 0.70269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 10.76 113.37 1.22 -0.59 16 2 S -0.28 -5.44 22.38 -56.49 -1.26 -6.70 16 3 C -0.09 -1.80 5.84 71.98 0.42 -1.37 16 4 C -0.08 -1.52 4.92 30.59 0.15 -1.37 16 5 C 0.09 2.48 2.46 29.85 0.07 2.55 16 6 H 0.12 3.32 7.16 -2.39 -0.02 3.31 16 7 O -0.33 -10.71 8.96 -45.03 -0.40 -11.11 16 8 C 0.47 18.43 7.58 71.24 0.54 18.97 16 9 O -0.52 -23.83 15.25 21.96 0.33 -23.49 16 10 C -0.04 -1.60 5.29 29.10 0.15 -1.44 16 11 C -0.20 -9.63 4.43 -19.40 -0.09 -9.72 16 12 C -0.09 -3.89 9.66 22.22 0.21 -3.68 16 13 C -0.24 -10.95 10.05 22.46 0.23 -10.72 16 14 C -0.11 -5.34 10.02 22.22 0.22 -5.11 16 15 C -0.19 -10.19 8.68 22.73 0.20 -9.99 16 16 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 17 C -0.48 -24.85 8.15 23.46 0.19 -24.66 16 18 H 0.07 3.66 6.68 -2.91 -0.02 3.64 16 19 C 0.04 1.87 5.16 85.26 0.44 2.31 16 20 N -0.82 -41.96 10.97 21.83 0.24 -41.72 16 21 Si 0.97 36.60 29.59 68.60 2.03 38.63 16 22 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 23 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 25 C 0.48 12.56 7.63 71.24 0.54 13.11 16 26 O -0.53 -17.98 17.27 28.31 0.49 -17.49 16 27 O -0.50 -8.78 13.39 -51.37 -0.69 -9.47 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.93 7.82 -2.39 -0.02 1.92 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.13 1.92 8.11 -2.39 -0.02 1.90 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.12 3.95 8.05 -2.39 -0.02 3.93 16 36 H 0.11 4.34 7.04 -2.39 -0.02 4.33 16 37 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 40 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 41 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 42 H 0.43 3.80 9.10 -74.06 -0.67 3.12 16 Total: -1.00 -68.71 378.69 5.51 -63.20 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.38 Total: 34.61 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.39 Total: -26.45 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -0.27 Total: -61.57 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.26 Total: -6.70 kcal Total: -68.71 5.51 -63.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610387767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.235 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds