Wall clock time and date at job start Tue Mar 31 2020 21:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 103.00076 * 2 1 4 4 C 1.53004 * 109.47068 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47078 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47074 * 55.00168 * 5 4 3 7 7 O 1.45207 * 109.47252 * 295.00100 * 5 4 3 8 8 C 1.34224 * 116.99815 * 150.00030 * 7 5 4 9 9 O 1.20826 * 119.99997 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99984 * 180.02562 * 8 7 5 11 11 C 1.50694 * 109.47566 * 179.97438 * 10 8 7 12 12 C 1.37640 * 120.12755 * 265.00202 * 11 10 8 13 13 C 1.38610 * 120.24574 * 180.29570 * 12 11 10 14 14 C 1.38663 * 120.50297 * 359.43965 * 13 12 11 15 15 C 1.37598 * 120.24567 * 0.55900 * 14 13 12 16 16 C 1.40704 * 120.12589 * 85.01735 * 11 10 8 17 17 C 1.41387 * 120.24480 * 359.96452 * 16 11 10 18 18 H 1.08006 * 119.99793 * 334.08076 * 17 16 11 19 19 C 1.39940 * 120.00234 * 154.08580 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.61546 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.62649 * 19 17 16 22 22 H 1.48496 * 109.47262 * 59.99447 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46694 * 299.99081 * 21 19 17 25 25 C 1.50701 * 109.47189 * 175.00324 * 5 4 3 26 26 O 1.20825 * 120.00172 * 120.00100 * 25 5 4 27 27 O 1.34233 * 119.99446 * 300.00157 * 25 5 4 28 28 H 1.08994 * 109.46967 * 300.00287 * 1 2 3 29 29 H 1.09007 * 109.46673 * 59.99786 * 1 2 3 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47529 * 60.00184 * 3 2 1 32 32 H 1.09003 * 109.47309 * 299.99990 * 3 2 1 33 33 H 1.08999 * 109.47088 * 60.00123 * 4 3 2 34 34 H 1.08997 * 109.47284 * 299.99523 * 4 3 2 35 35 H 1.09010 * 109.47210 * 59.99596 * 10 8 7 36 36 H 1.08998 * 109.47198 * 300.00296 * 10 8 7 37 37 H 1.07992 * 119.87745 * 0.02562 * 12 11 10 38 38 H 1.08008 * 119.75251 * 179.70362 * 13 12 11 39 39 H 1.07998 * 119.87634 * 180.30363 * 14 13 12 40 40 H 1.08001 * 120.12403 * 179.74226 * 15 14 13 41 41 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 42 42 H 0.96701 * 116.99305 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5936 3.9178 0.8413 7 8 3.6323 4.0318 -1.2413 8 6 3.2753 5.3250 -1.1972 9 8 3.3396 5.9343 -0.1558 10 6 2.7929 6.0165 -2.4462 11 6 2.4576 7.4509 -2.1287 12 6 1.1628 7.8073 -1.8273 13 6 0.8505 9.1271 -1.5409 14 6 1.8381 10.1004 -1.5431 15 6 3.1392 9.7669 -1.8416 16 6 3.4670 8.4312 -2.1396 17 6 4.8006 8.0767 -2.4474 18 1 5.1468 7.0695 -2.2681 19 6 5.6722 9.0309 -2.9843 20 7 5.1962 10.1360 -3.4978 21 14 7.5152 8.7266 -2.9681 22 1 7.8197 7.4914 -3.7339 23 1 8.2128 9.8798 -3.5916 24 1 7.9780 8.5667 -1.5661 25 6 5.5787 3.6018 0.1244 26 8 6.1959 4.1719 -0.7439 27 8 6.2220 3.1209 1.1999 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1617 1.4702 -0.8891 34 1 4.1609 1.4704 0.8909 35 1 1.9034 5.5103 -2.8214 36 1 3.5756 5.9851 -3.2042 37 1 0.3865 7.0567 -1.8182 38 1 -0.1691 9.3987 -1.3101 39 1 1.5843 11.1248 -1.3136 40 1 3.9061 10.5274 -1.8467 41 1 5.8002 10.7977 -3.8696 42 1 7.1789 3.2551 1.2354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610387771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:09 Heat of formation + Delta-G solvation = -167.995860 kcal Electronic energy + Delta-G solvation = -27070.596500 eV Core-core repulsion = 23106.454804 eV Total energy + Delta-G solvation = -3964.141696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86811 -39.59292 -37.73234 -36.43560 -36.05080 -34.01793 -33.66537 -31.86986 -29.53016 -29.35773 -28.48712 -26.96769 -25.08842 -23.12405 -22.21878 -20.99802 -20.69448 -19.46012 -18.33883 -17.49135 -17.26855 -17.19513 -16.29164 -16.00358 -15.58208 -15.40165 -15.26316 -14.85258 -14.51392 -14.15128 -13.77477 -13.72314 -13.65712 -13.53549 -13.20792 -12.67521 -12.58611 -12.30262 -12.03081 -11.79527 -11.60204 -11.57183 -11.52514 -11.31231 -11.16509 -11.05366 -11.00081 -10.73800 -10.42367 -10.33247 -10.23182 -9.91070 -9.55027 -9.42920 -9.17510 -7.97253 -7.40799 -7.36432 -6.77528 -4.39201 1.31203 2.11677 2.27223 2.34251 2.70952 2.85759 2.97948 3.07664 3.14510 3.26486 3.29079 3.95712 4.40766 4.50153 4.60381 4.64153 4.84525 4.85126 4.90155 5.11745 5.22440 5.33462 5.41219 5.58103 5.67431 5.69975 5.90353 5.98058 6.20817 6.36250 6.38623 6.44710 6.61256 6.78498 7.06137 7.23305 7.35591 7.58732 7.77192 7.84550 8.01340 8.07224 8.24842 8.27015 8.60909 8.86786 8.94926 10.16307 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.003641 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.850613 B = 7689.073322 C = 9504.913890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.262 6.262 3 C -0.087 4.087 4 C -0.092 4.092 5 C 0.103 3.897 6 H 0.123 0.877 7 O -0.336 6.336 8 C 0.461 3.539 9 O -0.487 6.487 10 C -0.038 4.038 11 C -0.200 4.200 12 C -0.075 4.075 13 C -0.242 4.242 14 C -0.103 4.103 15 C -0.158 4.158 16 C 0.132 3.868 17 C -0.456 4.456 18 H 0.076 0.924 19 C 0.079 3.921 20 N -0.791 5.791 21 Si 0.904 3.096 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 C 0.463 3.537 26 O -0.484 6.484 27 O -0.514 6.514 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.281 0.719 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -16.202 5.860 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.036 6.036 3 C -0.235 4.235 4 C -0.130 4.130 5 C 0.044 3.956 6 H 0.141 0.859 7 O -0.254 6.254 8 C 0.304 3.696 9 O -0.371 6.371 10 C -0.075 4.075 11 C -0.201 4.201 12 C -0.093 4.093 13 C -0.261 4.261 14 C -0.121 4.121 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.485 4.485 18 H 0.095 0.905 19 C -0.139 4.139 20 N -0.416 5.416 21 Si 0.728 3.272 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C 0.303 3.697 26 O -0.369 6.369 27 O -0.327 6.327 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.136 -16.577 5.794 17.838 hybrid contribution 0.722 1.230 0.151 1.434 sum -2.414 -15.347 5.945 16.634 Atomic orbital electron populations 1.23385 0.93780 1.06518 1.05241 1.86814 1.07807 1.10858 1.98138 1.23384 0.99121 0.94729 1.06237 1.21376 0.94525 0.91314 1.05770 1.21881 0.87808 0.95715 0.90165 0.85928 1.86772 1.75525 1.28508 1.34636 1.24798 0.73389 0.78665 0.92755 1.90647 1.49392 1.64453 1.32628 1.20009 1.02091 0.93327 0.92114 1.19013 0.93638 0.92043 1.15430 1.20296 0.94679 0.95213 0.99118 1.20297 0.97430 0.93618 1.14790 1.20703 0.94137 0.96924 1.00384 1.21308 0.95140 0.97321 1.03993 1.17347 0.91847 0.90972 0.86928 1.19538 0.94912 0.97645 1.36418 0.90542 1.25876 1.01275 0.94192 0.92556 1.69806 1.37531 1.07654 1.26626 0.86419 0.82044 0.78885 0.79829 1.18719 1.20286 1.18875 1.23570 0.91437 0.75475 0.79232 1.90823 1.68097 1.37654 1.40339 1.84465 1.28587 1.74971 1.44671 0.90367 0.90220 0.88053 0.89497 0.88719 0.88952 0.87665 0.89191 0.87090 0.89601 0.89524 0.89447 0.86441 0.90762 0.72755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.26 -2.46 22.38 -107.50 -2.41 -4.86 16 3 C -0.09 -0.82 5.84 37.16 0.22 -0.60 16 4 C -0.09 -0.92 4.90 -26.73 -0.13 -1.05 16 5 C 0.10 1.41 2.46 -27.88 -0.07 1.35 16 6 H 0.12 1.66 7.16 -51.93 -0.37 1.29 16 7 O -0.34 -5.55 8.97 -45.90 -0.41 -5.97 16 8 C 0.46 9.13 7.51 36.00 0.27 9.40 16 9 O -0.49 -11.07 15.25 -18.75 -0.29 -11.35 16 10 C -0.04 -0.76 5.29 -29.04 -0.15 -0.91 16 11 C -0.20 -4.73 4.43 -103.91 -0.46 -5.19 16 12 C -0.07 -1.67 9.66 -39.66 -0.38 -2.05 16 13 C -0.24 -5.48 10.05 -39.29 -0.39 -5.87 16 14 C -0.10 -2.46 10.02 -39.66 -0.40 -2.86 16 15 C -0.16 -4.19 8.68 -38.87 -0.34 -4.53 16 16 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 17 C -0.46 -12.25 8.14 -37.75 -0.31 -12.56 16 18 H 0.08 2.07 6.68 -52.48 -0.35 1.72 16 19 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 20 N -0.79 -20.52 10.97 55.55 0.61 -19.91 16 21 Si 0.90 19.71 29.59 -169.99 -5.03 14.68 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 25 C 0.46 6.94 7.67 36.01 0.28 7.22 16 26 O -0.48 -9.38 17.22 -25.41 -0.44 -9.82 16 27 O -0.51 -5.59 13.23 -39.26 -0.52 -6.11 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.09 0.94 7.82 -51.92 -0.41 0.53 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.11 0.91 8.00 -51.93 -0.42 0.49 16 35 H 0.09 1.45 8.05 -51.92 -0.42 1.03 16 36 H 0.11 2.26 7.06 -51.93 -0.37 1.89 16 37 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.41 2.85 9.10 45.56 0.41 3.27 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -32.78 378.35 -9.00 -41.78 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.76 Total: 8.38 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.47 Total: -12.54 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.65 Total: -33.24 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.41 Total: -4.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.78 -9.00 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610387771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.211 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds