Wall clock time and date at job start Tue Mar 31 2020 21:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 103.00076 * 2 1 4 4 C 1.53004 * 109.47068 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47078 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47074 * 55.00168 * 5 4 3 7 7 O 1.45207 * 109.47252 * 295.00100 * 5 4 3 8 8 C 1.34224 * 116.99815 * 150.00030 * 7 5 4 9 9 O 1.20826 * 119.99997 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99984 * 180.02562 * 8 7 5 11 11 C 1.50694 * 109.47566 * 179.97438 * 10 8 7 12 12 C 1.37640 * 120.12755 * 265.00202 * 11 10 8 13 13 C 1.38610 * 120.24574 * 180.29570 * 12 11 10 14 14 C 1.38663 * 120.50297 * 359.43965 * 13 12 11 15 15 C 1.37598 * 120.24567 * 0.55900 * 14 13 12 16 16 C 1.40704 * 120.12589 * 85.01735 * 11 10 8 17 17 C 1.41387 * 120.24480 * 359.96452 * 16 11 10 18 18 H 1.08006 * 119.99793 * 334.08076 * 17 16 11 19 19 C 1.39940 * 120.00234 * 154.08580 * 17 16 11 20 20 N 1.30822 * 119.99912 * 343.61546 * 19 17 16 21 21 Si 1.86803 * 120.00192 * 163.62649 * 19 17 16 22 22 H 1.48496 * 109.47262 * 59.99447 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46694 * 299.99081 * 21 19 17 25 25 C 1.50701 * 109.47189 * 175.00324 * 5 4 3 26 26 O 1.20825 * 120.00172 * 120.00100 * 25 5 4 27 27 O 1.34233 * 119.99446 * 300.00157 * 25 5 4 28 28 H 1.08994 * 109.46967 * 300.00287 * 1 2 3 29 29 H 1.09007 * 109.46673 * 59.99786 * 1 2 3 30 30 H 1.08997 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47529 * 60.00184 * 3 2 1 32 32 H 1.09003 * 109.47309 * 299.99990 * 3 2 1 33 33 H 1.08999 * 109.47088 * 60.00123 * 4 3 2 34 34 H 1.08997 * 109.47284 * 299.99523 * 4 3 2 35 35 H 1.09010 * 109.47210 * 59.99596 * 10 8 7 36 36 H 1.08998 * 109.47198 * 300.00296 * 10 8 7 37 37 H 1.07992 * 119.87745 * 0.02562 * 12 11 10 38 38 H 1.08008 * 119.75251 * 179.70362 * 13 12 11 39 39 H 1.07998 * 119.87634 * 180.30363 * 14 13 12 40 40 H 1.08001 * 120.12403 * 179.74226 * 15 14 13 41 41 H 0.97001 * 120.00439 * 179.97438 * 20 19 17 42 42 H 0.96701 * 116.99305 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5936 3.9178 0.8413 7 8 3.6323 4.0318 -1.2413 8 6 3.2753 5.3250 -1.1972 9 8 3.3396 5.9343 -0.1558 10 6 2.7929 6.0165 -2.4462 11 6 2.4576 7.4509 -2.1287 12 6 1.1628 7.8073 -1.8273 13 6 0.8505 9.1271 -1.5409 14 6 1.8381 10.1004 -1.5431 15 6 3.1392 9.7669 -1.8416 16 6 3.4670 8.4312 -2.1396 17 6 4.8006 8.0767 -2.4474 18 1 5.1468 7.0695 -2.2681 19 6 5.6722 9.0309 -2.9843 20 7 5.1962 10.1360 -3.4978 21 14 7.5152 8.7266 -2.9681 22 1 7.8197 7.4914 -3.7339 23 1 8.2128 9.8798 -3.5916 24 1 7.9780 8.5667 -1.5661 25 6 5.5787 3.6018 0.1244 26 8 6.1959 4.1719 -0.7439 27 8 6.2220 3.1209 1.1999 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1617 1.4702 -0.8891 34 1 4.1609 1.4704 0.8909 35 1 1.9034 5.5103 -2.8214 36 1 3.5756 5.9851 -3.2042 37 1 0.3865 7.0567 -1.8182 38 1 -0.1691 9.3987 -1.3101 39 1 1.5843 11.1248 -1.3136 40 1 3.9061 10.5274 -1.8467 41 1 5.8002 10.7977 -3.8696 42 1 7.1789 3.2551 1.2354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610387771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:08 Heat of formation + Delta-G solvation = -185.851451 kcal Electronic energy + Delta-G solvation = -27071.370777 eV Core-core repulsion = 23106.454804 eV Total energy + Delta-G solvation = -3964.915973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18101 -40.95497 -39.46632 -37.84010 -37.23672 -35.56122 -35.05337 -33.57721 -31.40788 -30.03978 -29.49400 -28.55610 -26.96974 -24.12644 -23.52838 -22.85997 -21.98977 -21.15912 -19.49523 -19.13051 -18.86695 -18.45352 -17.47444 -17.26335 -16.97111 -16.75262 -16.47983 -16.30464 -15.89205 -15.43933 -15.35428 -14.91345 -14.72808 -14.42814 -14.27391 -14.22607 -13.79306 -13.64312 -13.42467 -13.16802 -13.01092 -12.98580 -12.82663 -12.80832 -12.64619 -12.60956 -12.54736 -12.24006 -12.16218 -11.58274 -11.41454 -11.37070 -11.27463 -11.08698 -10.97941 -9.27044 -9.24970 -8.67613 -8.66685 -6.36483 0.59272 0.83698 0.96979 1.04381 1.16980 1.29593 1.39911 1.48213 1.53241 1.63622 2.01195 2.15277 2.72428 3.48650 3.51330 3.66748 3.82606 3.90961 4.04152 4.15747 4.31036 4.32562 4.36946 4.39052 4.52057 4.55354 4.67810 4.73724 4.74440 4.89533 4.93283 4.97749 5.14581 5.22680 5.33030 5.40504 5.49185 5.72135 5.98669 6.11151 6.18506 6.36502 6.66376 6.71371 6.81334 6.92847 7.04595 8.29364 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.003641 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.850613 B = 7689.073322 C = 9504.913890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.292 6.292 3 C -0.082 4.082 4 C -0.080 4.080 5 C 0.098 3.902 6 H 0.128 0.872 7 O -0.331 6.331 8 C 0.470 3.530 9 O -0.523 6.523 10 C -0.041 4.041 11 C -0.202 4.202 12 C -0.080 4.080 13 C -0.239 4.239 14 C -0.111 4.111 15 C -0.192 4.192 16 C 0.099 3.901 17 C -0.486 4.486 18 H 0.063 0.937 19 C 0.043 3.957 20 N -0.819 5.819 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.273 1.273 25 C 0.467 3.533 26 O -0.537 6.537 27 O -0.496 6.496 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.288 0.712 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 -18.004 6.512 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.067 6.067 3 C -0.230 4.230 4 C -0.118 4.118 5 C 0.040 3.960 6 H 0.145 0.855 7 O -0.248 6.248 8 C 0.314 3.686 9 O -0.410 6.410 10 C -0.078 4.078 11 C -0.204 4.204 12 C -0.098 4.098 13 C -0.258 4.258 14 C -0.129 4.129 15 C -0.212 4.212 16 C 0.097 3.903 17 C -0.516 4.516 18 H 0.081 0.919 19 C -0.173 4.173 20 N -0.445 5.445 21 Si 0.784 3.216 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.198 1.198 25 C 0.309 3.691 26 O -0.426 6.426 27 O -0.310 6.310 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -4.574 -18.408 6.458 20.037 hybrid contribution 1.031 1.667 0.054 1.961 sum -3.542 -16.741 6.512 18.309 Atomic orbital electron populations 1.23461 0.91178 1.07605 1.05921 1.86910 1.10751 1.10787 1.98215 1.23313 0.98388 0.94828 1.06446 1.21377 0.95367 0.88398 1.06654 1.22276 0.87200 0.97662 0.88888 0.85480 1.86718 1.75053 1.26795 1.36280 1.24551 0.72667 0.79397 0.91960 1.90630 1.51078 1.65482 1.33841 1.20028 1.03696 0.92007 0.92086 1.19425 0.93787 0.93416 1.13765 1.20762 0.95020 0.96198 0.97852 1.20759 0.98622 0.93474 1.12927 1.20998 0.93533 0.98589 0.99825 1.21297 0.96035 0.97273 1.06550 1.17697 0.92744 0.91943 0.87929 1.19582 0.96052 0.97521 1.38400 0.91932 1.26514 1.04797 0.93949 0.92003 1.69842 1.38880 1.08365 1.27370 0.85559 0.77551 0.79305 0.79207 1.18651 1.18181 1.19828 1.23820 0.91964 0.74263 0.79065 1.90815 1.69250 1.40192 1.42354 1.84421 1.30278 1.73745 1.42535 0.89475 0.89750 0.86780 0.88577 0.89249 0.89041 0.85731 0.84920 0.88137 0.85663 0.86146 0.87397 0.88528 0.90119 0.70505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.76 113.37 1.22 -0.03 16 2 S -0.29 -4.89 22.38 -56.49 -1.26 -6.15 16 3 C -0.08 -1.37 5.84 71.98 0.42 -0.95 16 4 C -0.08 -1.46 4.90 30.60 0.15 -1.31 16 5 C 0.10 2.58 2.46 29.85 0.07 2.65 16 6 H 0.13 3.29 7.16 -2.39 -0.02 3.28 16 7 O -0.33 -10.71 8.97 -44.99 -0.40 -11.12 16 8 C 0.47 18.43 7.51 71.24 0.54 18.97 16 9 O -0.52 -23.86 15.25 21.96 0.34 -23.52 16 10 C -0.04 -1.61 5.29 29.10 0.15 -1.45 16 11 C -0.20 -9.52 4.43 -19.41 -0.09 -9.61 16 12 C -0.08 -3.40 9.66 22.22 0.21 -3.18 16 13 C -0.24 -10.25 10.05 22.46 0.23 -10.02 16 14 C -0.11 -5.28 10.02 22.22 0.22 -5.06 16 15 C -0.19 -10.48 8.68 22.73 0.20 -10.28 16 16 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 17 C -0.49 -27.22 8.14 23.46 0.19 -27.03 16 18 H 0.06 3.56 6.68 -2.91 -0.02 3.54 16 19 C 0.04 2.27 5.16 85.26 0.44 2.71 16 20 N -0.82 -43.96 10.97 21.82 0.24 -43.73 16 21 Si 0.96 41.69 29.59 68.60 2.03 43.72 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C 0.47 13.72 7.67 71.24 0.55 14.27 16 26 O -0.54 -21.12 17.22 28.33 0.49 -20.63 16 27 O -0.50 -9.95 13.23 -51.44 -0.68 -10.63 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.60 7.82 -2.39 -0.02 1.58 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.83 8.00 -2.39 -0.02 1.81 16 35 H 0.13 3.93 8.05 -2.38 -0.02 3.91 16 36 H 0.10 4.16 7.06 -2.39 -0.02 4.15 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.10 5.54 6.22 -2.91 -0.02 5.52 16 41 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 42 H 0.43 5.24 9.10 -74.06 -0.67 4.57 16 Total: -1.00 -73.61 378.35 5.51 -68.10 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.38 Total: 28.98 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.39 Total: -25.01 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.24 Total: -43.73 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -0.26 Total: -65.91 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -1.26 Total: -6.15 kcal Total: -73.61 5.51 -68.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610387771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.754 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds