Wall clock time and date at job start Tue Mar 31 2020 20:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00283 * 2 1 4 4 O 1.20832 * 119.99543 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00197 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47069 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46795 * 180.02562 * 6 5 3 8 8 C 1.33308 * 119.99514 * 264.57812 * 7 6 5 9 9 H 1.08004 * 119.99476 * 146.35713 * 8 7 6 10 10 C 1.46786 * 120.00310 * 326.35177 * 8 7 6 11 11 N 1.29304 * 120.00335 * 335.55955 * 10 8 7 12 12 Si 1.86807 * 119.99805 * 155.55448 * 10 8 7 13 13 H 1.48505 * 109.46851 * 60.00199 * 12 10 8 14 14 H 1.48498 * 109.47154 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47158 * 300.00773 * 12 10 8 16 16 C 1.34777 * 120.00254 * 84.58803 * 7 6 5 17 17 O 1.21517 * 119.99696 * 5.38540 * 16 7 6 18 18 C 1.47360 * 120.00030 * 185.38887 * 16 7 6 19 19 C 1.39807 * 120.20480 * 317.64852 * 18 16 7 20 20 C 1.37741 * 119.90607 * 179.97438 * 19 18 16 21 21 N 1.48008 * 119.84511 * 180.02562 * 20 19 18 22 22 O 1.31701 * 120.00331 * 359.97438 * 21 20 19 23 23 O 1.31702 * 120.00098 * 180.02562 * 21 20 19 24 24 C 1.38586 * 120.30985 * 0.02562 * 20 19 18 25 25 C 1.38059 * 120.41116 * 359.74478 * 24 20 19 26 26 C 1.38701 * 120.09207 * 0.51091 * 25 24 20 27 27 O 1.35638 * 120.15665 * 179.77032 * 26 25 24 28 28 H 1.08997 * 109.46974 * 60.00445 * 1 2 3 29 29 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46940 * 300.00034 * 1 2 3 31 31 H 1.08997 * 109.47041 * 59.99721 * 5 3 2 32 32 H 1.09003 * 109.47104 * 299.99691 * 5 3 2 33 33 H 1.08993 * 109.47107 * 59.99431 * 6 5 3 34 34 H 1.09003 * 109.46575 * 299.99611 * 6 5 3 35 35 H 0.97003 * 120.00172 * 179.97438 * 11 10 8 36 36 H 1.08005 * 120.04299 * 359.95617 * 19 18 16 37 37 H 1.08004 * 119.79689 * 180.02562 * 24 20 19 38 38 H 1.08004 * 119.95207 * 180.25544 * 25 24 20 39 39 H 0.96692 * 114.00089 * 269.71980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1231 2.9620 1.1504 9 1 7.0927 2.5035 1.2772 10 6 5.5320 3.7430 2.2437 11 7 4.6544 4.6566 1.9847 12 14 6.0475 3.4169 4.0094 13 1 7.5073 3.6505 4.1500 14 1 5.3095 4.3313 4.9174 15 1 5.7351 2.0091 4.3643 16 6 6.1419 2.7443 -1.1610 17 8 5.5391 2.7125 -2.2156 18 6 7.6149 2.7017 -1.1525 19 6 8.3378 3.5360 -0.2946 20 6 9.7144 3.4907 -0.2914 21 7 10.4784 4.3741 0.6178 22 8 9.8418 5.2014 1.4209 23 8 11.7947 4.3337 0.6230 24 6 10.3876 2.6218 -1.1355 25 6 9.6866 1.7889 -1.9845 26 6 8.3002 1.8243 -2.0055 27 8 7.6103 1.0099 -2.8424 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7805 -0.8891 32 1 3.9558 0.7809 0.8909 33 1 3.6101 3.2359 0.8909 34 1 3.6108 3.2363 -0.8890 35 1 4.2635 5.1725 2.7072 36 1 7.8174 4.2153 0.3644 37 1 11.4672 2.5928 -1.1258 38 1 10.2187 1.1117 -2.6363 39 1 7.4319 1.3976 -3.7101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632394432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:58 Heat of formation + Delta-G solvation = -93.631246 kcal Electronic energy + Delta-G solvation = -29639.777095 eV Core-core repulsion = 25132.566876 eV Total energy + Delta-G solvation = -4507.210219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.51127 -40.12926 -38.77767 -38.12270 -36.45954 -36.28274 -35.17479 -34.08382 -32.50458 -31.96817 -30.72189 -30.36198 -27.61829 -25.99307 -25.08546 -24.56772 -22.95240 -21.96943 -20.50763 -19.72581 -18.71448 -18.36636 -17.82398 -17.45861 -16.67617 -16.40815 -16.29379 -16.05584 -15.72983 -15.60783 -15.41579 -14.84444 -14.53153 -14.03560 -13.90844 -13.69373 -13.38371 -12.88126 -12.82631 -12.49140 -12.37383 -12.25916 -12.06647 -11.93222 -11.49365 -11.25046 -11.07172 -11.00422 -10.80764 -10.64874 -10.64465 -10.57187 -10.35758 -10.32752 -10.15804 -9.47269 -9.16016 -9.03023 -8.79921 -8.12096 -6.86661 -4.19302 -0.40225 0.96807 1.27415 1.45887 2.54127 2.90833 2.94216 3.05320 3.07009 3.16031 3.80310 3.83679 4.06846 4.28894 4.49131 4.60848 4.80470 5.06606 5.12202 5.16577 5.22825 5.23041 5.47157 5.53978 5.64965 5.70934 5.77761 5.88383 5.96570 6.10078 6.12198 6.30189 6.54987 6.60374 6.63408 6.87988 7.08247 7.10462 7.38982 7.62967 7.96856 8.05519 8.53094 9.13137 9.62495 10.08704 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004345 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.699769 B = 6442.343093 C = 8271.132362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.122 3.878 7 N -0.390 5.390 8 C -0.408 4.408 9 H 0.098 0.902 10 C 0.066 3.934 11 N -0.795 5.795 12 Si 0.910 3.090 13 H -0.258 1.258 14 H -0.277 1.277 15 H -0.266 1.266 16 C 0.488 3.512 17 O -0.596 6.596 18 C -0.112 4.112 19 C 0.020 3.980 20 C -0.035 4.035 21 N -0.009 5.009 22 O -0.165 6.165 23 O -0.199 6.199 24 C -0.043 4.043 25 C -0.158 4.158 26 C 0.192 3.808 27 O -0.480 6.480 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.287 0.713 36 H 0.186 0.814 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -7.553 -4.199 8.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.164 4.164 6 C -0.001 4.001 7 N -0.102 5.102 8 C -0.535 4.535 9 H 0.115 0.885 10 C -0.153 4.153 11 N -0.423 5.423 12 Si 0.733 3.267 13 H -0.183 1.183 14 H -0.202 1.202 15 H -0.191 1.191 16 C 0.278 3.722 17 O -0.483 6.483 18 C -0.117 4.117 19 C 0.000 4.000 20 C -0.122 4.122 21 N 0.467 4.533 22 O -0.361 6.361 23 O -0.387 6.387 24 C -0.063 4.063 25 C -0.177 4.177 26 C 0.144 3.856 27 O -0.293 6.293 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.203 0.797 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.262 -7.849 -4.522 9.062 hybrid contribution 0.235 0.432 0.914 1.038 sum 0.497 -7.417 -3.607 8.262 Atomic orbital electron populations 1.23185 0.77185 1.03134 1.02386 1.86536 1.22870 1.34250 1.84575 1.23974 0.92262 0.80971 0.71792 1.90660 1.67254 1.36207 1.45075 1.21850 0.86214 1.02770 1.05593 1.21306 0.81593 0.91549 1.05655 1.42162 1.04831 1.58135 1.05091 1.20205 1.06167 1.35497 0.91624 0.88464 1.26933 0.95053 0.92284 1.01054 1.68926 1.23467 1.14042 1.35898 0.86245 0.80467 0.79256 0.80689 1.18265 1.20217 1.19072 1.17561 0.85151 0.84980 0.84487 1.90612 1.68866 1.58057 1.30798 1.20495 0.96338 0.96906 0.97929 1.21861 0.89902 0.95556 0.92687 1.20286 0.91578 1.00292 1.00058 1.50420 1.02887 0.99913 1.00080 1.96320 1.70349 1.33456 1.35952 1.96213 0.89388 1.76482 1.76595 1.20864 1.01651 0.92118 0.91712 1.21237 0.92911 1.01487 1.02105 1.18850 0.89276 0.86621 0.90852 1.84609 1.75592 1.40469 1.28597 0.92113 0.88538 0.92111 0.88044 0.87621 0.86762 0.90982 0.90028 0.79731 0.82997 0.83181 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.63 10.57 -39.25 -0.41 -6.05 16 3 C 0.47 8.43 7.96 36.01 0.29 8.72 16 4 O -0.51 -10.36 15.73 -18.75 -0.30 -10.65 16 5 C -0.13 -2.33 6.10 -27.88 -0.17 -2.50 16 6 C 0.12 2.69 4.25 -4.04 -0.02 2.67 16 7 N -0.39 -8.78 2.49 -114.50 -0.29 -9.07 16 8 C -0.41 -9.21 7.00 -13.46 -0.09 -9.30 16 9 H 0.10 2.16 6.15 -52.48 -0.32 1.84 16 10 C 0.07 1.49 5.01 -15.16 -0.08 1.42 16 11 N -0.80 -18.77 11.53 56.00 0.65 -18.13 16 12 Si 0.91 17.94 29.70 -169.99 -5.05 12.89 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 16 C 0.49 10.73 7.02 -12.55 -0.09 10.64 16 17 O -0.60 -13.98 15.87 -9.21 -0.15 -14.12 16 18 C -0.11 -2.10 5.25 -104.84 -0.55 -2.65 16 19 C 0.02 0.37 7.19 -39.18 -0.28 0.09 16 20 C -0.04 -0.60 6.88 -80.01 -0.55 -1.15 16 21 N -0.01 -0.17 4.98 33.93 0.17 0.00 16 22 O -0.17 -3.43 19.13 -31.57 -0.60 -4.04 16 23 O -0.20 -3.65 19.14 -31.57 -0.60 -4.25 16 24 C -0.04 -0.58 9.56 -39.52 -0.38 -0.96 16 25 C -0.16 -1.95 9.98 -39.48 -0.39 -2.34 16 26 C 0.19 2.95 6.69 -38.65 -0.26 2.69 16 27 O -0.48 -6.97 12.35 -33.17 -0.41 -7.38 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 34 H 0.07 1.70 7.47 -51.93 -0.39 1.31 16 35 H 0.29 6.36 8.26 -40.82 -0.34 6.02 16 36 H 0.19 3.86 5.84 -52.48 -0.31 3.55 16 37 H 0.15 1.69 7.56 -52.48 -0.40 1.29 16 38 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 39 H 0.40 4.35 9.06 45.56 0.41 4.76 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -29.28 354.67 -6.10 -35.38 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.95 Total: 11.26 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.50 Total: 8.81 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.53 Total: -27.20 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.47 Total: -46.49 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.05 Total: 12.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.28 -6.10 -35.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632394432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.249 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds