Wall clock time and date at job start Tue Mar 31 2020 20:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00283 * 2 1 4 4 O 1.20832 * 119.99543 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00197 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47069 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46795 * 180.02562 * 6 5 3 8 8 C 1.33308 * 119.99514 * 264.57812 * 7 6 5 9 9 H 1.08004 * 119.99476 * 146.35713 * 8 7 6 10 10 C 1.46786 * 120.00310 * 326.35177 * 8 7 6 11 11 N 1.29304 * 120.00335 * 335.55955 * 10 8 7 12 12 Si 1.86807 * 119.99805 * 155.55448 * 10 8 7 13 13 H 1.48505 * 109.46851 * 60.00199 * 12 10 8 14 14 H 1.48498 * 109.47154 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47158 * 300.00773 * 12 10 8 16 16 C 1.34777 * 120.00254 * 84.58803 * 7 6 5 17 17 O 1.21517 * 119.99696 * 5.38540 * 16 7 6 18 18 C 1.47360 * 120.00030 * 185.38887 * 16 7 6 19 19 C 1.39807 * 120.20480 * 317.64852 * 18 16 7 20 20 C 1.37741 * 119.90607 * 179.97438 * 19 18 16 21 21 N 1.48008 * 119.84511 * 180.02562 * 20 19 18 22 22 O 1.31701 * 120.00331 * 359.97438 * 21 20 19 23 23 O 1.31702 * 120.00098 * 180.02562 * 21 20 19 24 24 C 1.38586 * 120.30985 * 0.02562 * 20 19 18 25 25 C 1.38059 * 120.41116 * 359.74478 * 24 20 19 26 26 C 1.38701 * 120.09207 * 0.51091 * 25 24 20 27 27 O 1.35638 * 120.15665 * 179.77032 * 26 25 24 28 28 H 1.08997 * 109.46974 * 60.00445 * 1 2 3 29 29 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46940 * 300.00034 * 1 2 3 31 31 H 1.08997 * 109.47041 * 59.99721 * 5 3 2 32 32 H 1.09003 * 109.47104 * 299.99691 * 5 3 2 33 33 H 1.08993 * 109.47107 * 59.99431 * 6 5 3 34 34 H 1.09003 * 109.46575 * 299.99611 * 6 5 3 35 35 H 0.97003 * 120.00172 * 179.97438 * 11 10 8 36 36 H 1.08005 * 120.04299 * 359.95617 * 19 18 16 37 37 H 1.08004 * 119.79689 * 180.02562 * 24 20 19 38 38 H 1.08004 * 119.95207 * 180.25544 * 25 24 20 39 39 H 0.96692 * 114.00089 * 269.71980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1231 2.9620 1.1504 9 1 7.0927 2.5035 1.2772 10 6 5.5320 3.7430 2.2437 11 7 4.6544 4.6566 1.9847 12 14 6.0475 3.4169 4.0094 13 1 7.5073 3.6505 4.1500 14 1 5.3095 4.3313 4.9174 15 1 5.7351 2.0091 4.3643 16 6 6.1419 2.7443 -1.1610 17 8 5.5391 2.7125 -2.2156 18 6 7.6149 2.7017 -1.1525 19 6 8.3378 3.5360 -0.2946 20 6 9.7144 3.4907 -0.2914 21 7 10.4784 4.3741 0.6178 22 8 9.8418 5.2014 1.4209 23 8 11.7947 4.3337 0.6230 24 6 10.3876 2.6218 -1.1355 25 6 9.6866 1.7889 -1.9845 26 6 8.3002 1.8243 -2.0055 27 8 7.6103 1.0099 -2.8424 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7805 -0.8891 32 1 3.9558 0.7809 0.8909 33 1 3.6101 3.2359 0.8909 34 1 3.6108 3.2363 -0.8890 35 1 4.2635 5.1725 2.7072 36 1 7.8174 4.2153 0.3644 37 1 11.4672 2.5928 -1.1258 38 1 10.2187 1.1117 -2.6363 39 1 7.4319 1.3976 -3.7101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632394432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:57 Heat of formation + Delta-G solvation = -112.073656 kcal Electronic energy + Delta-G solvation = -29640.576818 eV Core-core repulsion = 25132.566876 eV Total energy + Delta-G solvation = -4508.009942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92927 -41.51772 -40.32438 -39.54578 -37.75779 -37.66889 -36.87143 -35.56168 -34.21581 -33.44460 -32.03327 -31.79531 -28.74436 -27.41886 -26.75104 -26.03123 -24.33708 -23.30527 -21.93290 -21.35363 -20.25851 -19.63740 -19.23092 -18.87711 -18.18012 -17.91227 -17.69401 -17.51885 -17.11773 -17.00205 -16.69109 -16.42591 -16.14222 -15.47446 -15.29555 -15.02112 -14.70545 -14.32271 -14.22411 -13.94681 -13.82179 -13.54879 -13.50487 -13.29536 -12.97440 -12.81194 -12.66097 -12.57577 -12.27375 -12.21031 -12.05759 -11.87918 -11.86673 -11.82732 -11.65117 -11.18110 -10.65660 -10.36394 -10.25629 -9.85982 -8.57765 -5.97525 -1.81987 -0.33564 -0.00394 0.06937 1.09089 1.34019 1.41308 1.46944 1.58359 1.78701 2.20943 2.27587 2.69741 2.84616 2.94049 3.40355 3.46452 3.77546 3.81478 3.87881 4.03720 4.12436 4.25556 4.29840 4.30404 4.50104 4.53524 4.62894 4.67138 4.71129 4.75008 4.85843 5.01919 5.14053 5.22919 5.30001 5.34083 5.62499 5.67687 6.22898 6.60161 6.65714 6.80846 7.41863 7.91442 8.39814 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004345 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.699769 B = 6442.343093 C = 8271.132362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.115 4.115 6 C 0.129 3.871 7 N -0.402 5.402 8 C -0.418 4.418 9 H 0.097 0.903 10 C 0.033 3.967 11 N -0.833 5.833 12 Si 0.962 3.038 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.255 1.255 16 C 0.482 3.518 17 O -0.618 6.618 18 C -0.145 4.145 19 C 0.010 3.990 20 C -0.047 4.047 21 N -0.006 5.006 22 O -0.252 6.252 23 O -0.145 6.145 24 C -0.012 4.012 25 C -0.131 4.131 26 C 0.215 3.785 27 O -0.486 6.486 28 H 0.061 0.939 29 H 0.138 0.862 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.288 0.712 36 H 0.149 0.851 37 H 0.192 0.808 38 H 0.206 0.794 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -10.671 -5.642 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.005 3.995 7 N -0.115 5.115 8 C -0.546 4.546 9 H 0.115 0.885 10 C -0.182 4.182 11 N -0.463 5.463 12 Si 0.785 3.215 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.179 1.179 16 C 0.273 3.727 17 O -0.508 6.508 18 C -0.149 4.149 19 C -0.010 4.010 20 C -0.134 4.134 21 N 0.467 4.533 22 O -0.426 6.426 23 O -0.351 6.351 24 C -0.031 4.031 25 C -0.150 4.150 26 C 0.166 3.834 27 O -0.301 6.301 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.210 0.790 38 H 0.222 0.778 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 2.754 -10.898 -5.889 12.690 hybrid contribution -0.352 1.219 1.039 1.640 sum 2.403 -9.679 -4.850 11.090 Atomic orbital electron populations 1.23591 0.74675 1.05904 1.02495 1.86506 1.25214 1.32292 1.83807 1.23750 0.91977 0.81332 0.71104 1.90651 1.67808 1.37427 1.46693 1.21629 0.87075 1.00320 1.06283 1.21060 0.81792 0.93513 1.03157 1.42278 1.04882 1.58897 1.05462 1.20221 1.06599 1.35890 0.91843 0.88515 1.27560 0.95044 0.91919 1.03703 1.69000 1.25267 1.15413 1.36625 0.85465 0.79211 0.79504 0.77337 1.19371 1.19970 1.17945 1.18134 0.86846 0.83756 0.83933 1.90568 1.70028 1.58806 1.31358 1.20326 0.94476 0.99627 1.00504 1.21408 0.90983 0.95527 0.93092 1.20483 0.90971 1.01125 1.00841 1.50653 1.02827 0.99809 0.99981 1.96365 1.70423 1.36673 1.39154 1.96157 0.89782 1.74523 1.74654 1.21424 1.03481 0.89305 0.88910 1.21702 0.91024 1.00867 1.01383 1.19059 0.90560 0.84663 0.89072 1.84555 1.75778 1.40218 1.29577 0.92058 0.84408 0.92078 0.87602 0.86454 0.88712 0.93852 0.90046 0.83308 0.79042 0.77750 0.71339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.84 10.57 -51.40 -0.54 -11.38 16 3 C 0.47 17.44 7.96 71.24 0.57 18.01 16 4 O -0.54 -22.84 15.73 21.95 0.35 -22.49 16 5 C -0.11 -4.37 6.10 29.85 0.18 -4.19 16 6 C 0.13 6.02 4.25 86.38 0.37 6.39 16 7 N -0.40 -19.13 2.49 -634.47 -1.58 -20.71 16 8 C -0.42 -19.94 7.00 86.71 0.61 -19.33 16 9 H 0.10 4.53 6.15 -2.91 -0.02 4.51 16 10 C 0.03 1.59 5.01 87.30 0.44 2.02 16 11 N -0.83 -42.22 11.53 23.26 0.27 -41.95 16 12 Si 0.96 38.51 29.70 68.60 2.04 40.55 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 16 C 0.48 21.92 7.02 86.64 0.61 22.53 16 17 O -0.62 -29.82 15.87 10.15 0.16 -29.66 16 18 C -0.14 -5.40 5.25 -20.01 -0.11 -5.51 16 19 C 0.01 0.39 7.19 22.53 0.16 0.55 16 20 C -0.05 -1.51 6.88 36.34 0.25 -1.26 16 21 N -0.01 -0.23 4.98 -46.55 -0.23 -0.46 16 22 O -0.25 -11.08 19.13 3.51 0.07 -11.01 16 23 O -0.14 -4.81 19.14 3.51 0.07 -4.74 16 24 C -0.01 -0.25 9.56 22.31 0.21 -0.04 16 25 C -0.13 -2.42 9.98 22.34 0.22 -2.19 16 26 C 0.21 5.88 6.69 22.87 0.15 6.03 16 27 O -0.49 -12.42 12.35 -75.59 -0.93 -13.35 16 28 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.09 4.81 5.34 -2.39 -0.01 4.80 16 34 H 0.04 2.21 7.47 -2.39 -0.02 2.19 16 35 H 0.29 13.67 8.26 -92.71 -0.77 12.90 16 36 H 0.15 6.79 5.84 -2.91 -0.02 6.77 16 37 H 0.19 2.76 7.56 -2.91 -0.02 2.74 16 38 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.42 7.68 9.06 -74.06 -0.67 7.01 16 Total: -1.00 -69.62 354.67 4.99 -64.63 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.48 Total: 25.79 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 4.86 Total: 24.78 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -1.55 Total: -63.12 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -0.84 Total: -92.64 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.04 Total: 40.55 kcal Total: -69.62 4.99 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632394432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.442 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds