Wall clock time and date at job start Tue Mar 31 2020 20:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99708 * 2 1 4 4 O 1.20827 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99498 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46663 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46797 * 180.02562 * 6 5 3 8 8 C 1.33327 * 119.99822 * 96.21768 * 7 6 5 9 9 H 1.08000 * 120.00061 * 221.60235 * 8 7 6 10 10 C 1.46781 * 119.99809 * 41.33403 * 8 7 6 11 11 N 1.29313 * 120.00453 * 9.75471 * 10 8 7 12 12 Si 1.86800 * 119.99863 * 189.74598 * 10 8 7 13 13 H 1.48507 * 109.46772 * 60.00379 * 12 10 8 14 14 H 1.48503 * 109.47089 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47569 * 300.00220 * 12 10 8 16 16 C 1.34776 * 119.99657 * 276.22165 * 7 6 5 17 17 O 1.21476 * 120.00211 * 356.22507 * 16 7 6 18 18 C 1.47707 * 119.99627 * 176.22768 * 16 7 6 19 19 C 1.39610 * 120.12809 * 33.68526 * 18 16 7 20 20 C 1.38433 * 119.78848 * 179.97438 * 19 18 16 21 21 O 1.35902 * 119.98083 * 179.97438 * 20 19 18 22 22 C 1.38878 * 120.03615 * 359.97438 * 20 19 18 23 23 C 1.38268 * 120.25424 * 0.03304 * 22 20 19 24 24 N 1.48015 * 119.88982 * 179.97438 * 23 22 20 25 25 O 1.31705 * 120.00317 * 0.02562 * 24 23 22 26 26 O 1.31704 * 119.99723 * 180.02562 * 24 23 22 27 27 C 1.37976 * 120.21647 * 359.70715 * 23 22 20 28 28 H 1.08996 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47419 * 300.00075 * 1 2 3 30 30 H 1.09003 * 109.47019 * 59.99699 * 1 2 3 31 31 H 1.08998 * 109.47163 * 60.00175 * 5 3 2 32 32 H 1.08992 * 109.47375 * 299.99805 * 5 3 2 33 33 H 1.08998 * 109.47061 * 60.00268 * 6 5 3 34 34 H 1.08992 * 109.47192 * 300.00072 * 6 5 3 35 35 H 0.96995 * 120.00658 * 180.02562 * 11 10 8 36 36 H 1.07997 * 120.11032 * 359.95736 * 19 18 16 37 37 H 0.96706 * 114.00187 * 90.00353 * 21 20 19 38 38 H 1.08000 * 119.87035 * 180.02562 * 22 20 19 39 39 H 1.08000 * 120.02329 * 180.28789 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1222 2.9780 -1.1482 9 1 7.0284 2.4200 -1.3325 10 6 5.6132 3.9072 -2.1640 11 7 4.6392 4.7082 -1.8776 12 14 6.3724 3.9330 -3.8705 13 1 6.2217 2.5961 -4.4995 14 1 5.6839 4.9517 -4.7033 15 1 7.8146 4.2709 -3.7658 16 6 6.1426 2.7284 1.1602 17 8 5.5404 2.6523 2.2124 18 6 7.6196 2.7218 1.1524 19 6 8.3187 3.4618 0.1970 20 6 9.7030 3.4511 0.1965 21 8 10.3874 4.1696 -0.7321 22 6 10.3927 2.7064 1.1444 23 6 9.7020 1.9728 2.0913 24 7 10.4452 1.1816 3.0975 25 8 11.7623 1.1775 3.0902 26 8 9.7895 0.4816 4.0001 27 6 8.3223 1.9803 2.1047 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 3.6100 3.2368 0.8893 34 1 3.6107 3.2357 -0.8906 35 1 4.3025 5.3220 -2.5489 36 1 7.7813 4.0406 -0.5396 37 1 10.5911 5.0742 -0.4576 38 1 11.4726 2.7003 1.1418 39 1 7.7861 1.4098 2.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632394927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:04 Heat of formation + Delta-G solvation = -94.437440 kcal Electronic energy + Delta-G solvation = -29169.812583 eV Core-core repulsion = 24662.567404 eV Total energy + Delta-G solvation = -4507.245178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.52921 -40.13335 -38.93697 -38.41428 -36.53001 -36.19282 -35.31310 -34.28211 -32.54953 -32.17095 -30.65695 -30.08459 -27.65278 -26.55935 -25.15309 -24.66198 -22.59738 -22.21405 -20.55747 -19.88563 -19.06538 -18.06393 -17.54888 -17.21004 -16.90582 -16.55569 -16.31221 -16.24246 -15.96251 -15.86289 -15.44655 -14.88545 -14.64693 -14.55847 -13.97332 -13.76209 -13.24867 -12.89862 -12.63163 -12.51371 -12.33380 -12.12683 -12.00327 -11.91889 -11.47202 -11.36898 -11.27499 -11.17608 -11.10273 -10.80041 -10.68714 -10.63691 -10.56931 -10.34905 -10.15385 -9.50504 -9.26727 -8.99886 -8.92097 -8.06735 -6.86601 -4.40614 -0.53308 0.81569 1.22240 1.27496 2.54982 2.84471 2.90836 2.95261 2.97013 3.08901 3.70991 3.77046 4.02651 4.16971 4.48280 4.68674 4.84789 5.00943 5.14754 5.17096 5.18727 5.23453 5.23943 5.54540 5.60483 5.67737 5.72279 5.77699 6.01343 6.09683 6.17629 6.33763 6.54548 6.60968 6.64534 6.82863 6.89895 7.13994 7.42320 7.48920 7.92794 8.06219 8.45040 9.05394 9.56012 10.07552 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009961 B = 0.004087 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.358777 B = 6848.769325 C = 9120.282880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.127 4.127 6 C 0.121 3.879 7 N -0.396 5.396 8 C -0.407 4.407 9 H 0.099 0.901 10 C 0.060 3.940 11 N -0.811 5.811 12 Si 0.915 3.085 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.260 1.260 16 C 0.492 3.508 17 O -0.589 6.589 18 C -0.071 4.071 19 C -0.035 4.035 20 C 0.089 3.911 21 O -0.483 6.483 22 C -0.080 4.080 23 C -0.007 4.007 24 N -0.010 5.010 25 O -0.185 6.185 26 O -0.173 6.173 27 C -0.026 4.026 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.191 0.809 37 H 0.393 0.607 38 H 0.155 0.845 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -1.869 -1.921 3.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.165 4.165 6 C -0.002 4.002 7 N -0.109 5.109 8 C -0.535 4.535 9 H 0.116 0.884 10 C -0.158 4.158 11 N -0.440 5.440 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.184 1.184 16 C 0.281 3.719 17 O -0.476 6.476 18 C -0.075 4.075 19 C -0.054 4.054 20 C 0.043 3.957 21 O -0.293 6.293 22 C -0.100 4.100 23 C -0.093 4.093 24 N 0.468 4.532 25 O -0.377 6.377 26 O -0.367 6.367 27 C -0.046 4.046 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.207 0.793 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.695 -1.581 -2.301 2.877 hybrid contribution 0.429 0.178 -0.410 0.619 sum 1.124 -1.403 -2.711 3.253 Atomic orbital electron populations 1.23183 0.77193 1.03134 1.02374 1.86538 1.22871 1.34276 1.84585 1.23973 0.92269 0.80962 0.71800 1.90658 1.67249 1.36205 1.45039 1.21875 0.86270 1.02978 1.05416 1.21401 0.81717 0.91258 1.05822 1.42086 1.04783 1.59115 1.04916 1.20248 1.12478 1.25784 0.94960 0.88413 1.27090 0.95249 0.92983 1.00439 1.68787 1.22510 1.16479 1.36258 0.86174 0.80249 0.79062 0.80618 1.19007 1.20377 1.18396 1.17974 0.85448 0.83915 0.84540 1.90665 1.69146 1.56824 1.30942 1.19931 0.95795 0.97298 0.94462 1.23260 0.92602 0.94240 0.95293 1.18081 0.89818 0.97331 0.90475 1.84904 1.75598 1.28920 1.39886 1.21322 1.02220 0.95050 0.91430 1.19848 0.91291 1.03497 0.94680 1.50454 1.02984 0.98857 1.00916 1.96240 0.89109 1.71297 1.81006 1.96282 1.68922 1.40787 1.30706 1.21164 0.90237 0.95468 0.97768 0.88544 0.92110 0.92127 0.87679 0.88219 0.91239 0.86215 0.90123 0.79259 0.75048 0.82760 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.62 10.57 -39.27 -0.41 -6.03 16 3 C 0.47 8.36 7.96 36.01 0.29 8.64 16 4 O -0.50 -10.28 15.73 -18.75 -0.29 -10.57 16 5 C -0.13 -2.30 6.09 -27.88 -0.17 -2.47 16 6 C 0.12 2.60 4.17 -4.04 -0.02 2.58 16 7 N -0.40 -8.52 2.47 -114.38 -0.28 -8.80 16 8 C -0.41 -8.49 6.34 -13.45 -0.09 -8.58 16 9 H 0.10 1.97 6.36 -52.49 -0.33 1.64 16 10 C 0.06 1.25 5.29 -15.16 -0.08 1.17 16 11 N -0.81 -18.08 11.21 56.00 0.63 -17.45 16 12 Si 0.91 16.32 29.65 -169.99 -5.04 11.28 16 13 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 14 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 15 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 16 C 0.49 10.57 7.33 -12.39 -0.09 10.48 16 17 O -0.59 -14.10 16.44 5.39 0.09 -14.01 16 18 C -0.07 -1.29 5.47 -104.99 -0.57 -1.86 16 19 C -0.04 -0.57 7.72 -39.00 -0.30 -0.87 16 20 C 0.09 1.23 6.70 -39.27 -0.26 0.97 16 21 O -0.48 -5.75 13.50 -19.43 -0.26 -6.01 16 22 C -0.08 -1.11 9.51 -39.33 -0.37 -1.49 16 23 C -0.01 -0.11 6.87 -80.03 -0.55 -0.66 16 24 N -0.01 -0.17 4.98 33.92 0.17 0.00 16 25 O -0.18 -3.19 19.14 -31.57 -0.60 -3.79 16 26 O -0.17 -3.17 19.14 -31.57 -0.60 -3.77 16 27 C -0.03 -0.44 9.13 -39.15 -0.36 -0.80 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.07 1.62 7.52 -51.93 -0.39 1.23 16 34 H 0.12 2.76 5.40 -51.93 -0.28 2.48 16 35 H 0.29 6.00 8.26 -40.82 -0.34 5.66 16 36 H 0.19 3.32 5.59 -52.49 -0.29 3.02 16 37 H 0.39 2.64 9.06 45.56 0.41 3.05 16 38 H 0.15 1.88 7.56 -52.49 -0.40 1.48 16 39 H 0.16 2.76 7.48 -52.49 -0.39 2.37 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -28.14 355.22 -5.70 -33.83 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -2.92 Total: 11.38 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.51 Total: 8.60 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.52 Total: -26.25 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.09 Total: -44.19 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.04 Total: 11.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.14 -5.70 -33.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632394927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.604 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds