Wall clock time and date at job start Tue Mar 31 2020 20:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99708 * 2 1 4 4 O 1.20827 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99498 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46663 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46797 * 180.02562 * 6 5 3 8 8 C 1.33327 * 119.99822 * 96.21768 * 7 6 5 9 9 H 1.08000 * 120.00061 * 221.60235 * 8 7 6 10 10 C 1.46781 * 119.99809 * 41.33403 * 8 7 6 11 11 N 1.29313 * 120.00453 * 9.75471 * 10 8 7 12 12 Si 1.86800 * 119.99863 * 189.74598 * 10 8 7 13 13 H 1.48507 * 109.46772 * 60.00379 * 12 10 8 14 14 H 1.48503 * 109.47089 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47569 * 300.00220 * 12 10 8 16 16 C 1.34776 * 119.99657 * 276.22165 * 7 6 5 17 17 O 1.21476 * 120.00211 * 356.22507 * 16 7 6 18 18 C 1.47707 * 119.99627 * 176.22768 * 16 7 6 19 19 C 1.39610 * 120.12809 * 33.68526 * 18 16 7 20 20 C 1.38433 * 119.78848 * 179.97438 * 19 18 16 21 21 O 1.35902 * 119.98083 * 179.97438 * 20 19 18 22 22 C 1.38878 * 120.03615 * 359.97438 * 20 19 18 23 23 C 1.38268 * 120.25424 * 0.03304 * 22 20 19 24 24 N 1.48015 * 119.88982 * 179.97438 * 23 22 20 25 25 O 1.31705 * 120.00317 * 0.02562 * 24 23 22 26 26 O 1.31704 * 119.99723 * 180.02562 * 24 23 22 27 27 C 1.37976 * 120.21647 * 359.70715 * 23 22 20 28 28 H 1.08996 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47419 * 300.00075 * 1 2 3 30 30 H 1.09003 * 109.47019 * 59.99699 * 1 2 3 31 31 H 1.08998 * 109.47163 * 60.00175 * 5 3 2 32 32 H 1.08992 * 109.47375 * 299.99805 * 5 3 2 33 33 H 1.08998 * 109.47061 * 60.00268 * 6 5 3 34 34 H 1.08992 * 109.47192 * 300.00072 * 6 5 3 35 35 H 0.96995 * 120.00658 * 180.02562 * 11 10 8 36 36 H 1.07997 * 120.11032 * 359.95736 * 19 18 16 37 37 H 0.96706 * 114.00187 * 90.00353 * 21 20 19 38 38 H 1.08000 * 119.87035 * 180.02562 * 22 20 19 39 39 H 1.08000 * 120.02329 * 180.28789 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1222 2.9780 -1.1482 9 1 7.0284 2.4200 -1.3325 10 6 5.6132 3.9072 -2.1640 11 7 4.6392 4.7082 -1.8776 12 14 6.3724 3.9330 -3.8705 13 1 6.2217 2.5961 -4.4995 14 1 5.6839 4.9517 -4.7033 15 1 7.8146 4.2709 -3.7658 16 6 6.1426 2.7284 1.1602 17 8 5.5404 2.6523 2.2124 18 6 7.6196 2.7218 1.1524 19 6 8.3187 3.4618 0.1970 20 6 9.7030 3.4511 0.1965 21 8 10.3874 4.1696 -0.7321 22 6 10.3927 2.7064 1.1444 23 6 9.7020 1.9728 2.0913 24 7 10.4452 1.1816 3.0975 25 8 11.7623 1.1775 3.0902 26 8 9.7895 0.4816 4.0001 27 6 8.3223 1.9803 2.1047 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 3.6100 3.2368 0.8893 34 1 3.6107 3.2357 -0.8906 35 1 4.3025 5.3220 -2.5489 36 1 7.7813 4.0406 -0.5396 37 1 10.5911 5.0742 -0.4576 38 1 11.4726 2.7003 1.1418 39 1 7.7861 1.4098 2.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632394927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:03 Heat of formation + Delta-G solvation = -111.905992 kcal Electronic energy + Delta-G solvation = -29170.570076 eV Core-core repulsion = 24662.567404 eV Total energy + Delta-G solvation = -4508.002672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.91021 -41.51198 -40.45398 -39.67612 -37.81551 -37.50318 -36.97482 -35.64629 -34.18197 -33.61882 -32.11495 -31.32428 -28.79109 -27.89337 -26.77657 -26.09533 -24.02008 -23.46529 -21.95698 -21.41213 -20.50234 -19.40752 -19.00733 -18.38125 -18.35531 -17.96999 -17.69094 -17.56920 -17.27462 -17.20044 -16.86661 -16.26140 -16.18128 -15.88209 -15.45502 -15.11650 -14.71369 -14.26878 -14.00972 -13.84532 -13.71725 -13.56434 -13.30845 -13.21473 -12.93605 -12.82251 -12.67150 -12.59373 -12.47981 -12.13659 -12.01885 -11.97151 -11.95872 -11.82055 -11.63489 -11.13163 -10.74669 -10.49101 -10.18988 -9.74413 -8.46988 -6.07282 -1.88796 -0.45436 -0.09791 -0.01999 1.10495 1.42324 1.51165 1.57290 1.58803 1.75137 2.24522 2.33182 2.66374 2.80732 2.95656 3.41842 3.55869 3.75741 3.80686 3.82982 3.94205 4.08348 4.19922 4.29170 4.30394 4.36781 4.49257 4.55609 4.60934 4.67826 4.87025 4.92968 5.04909 5.14715 5.25549 5.33826 5.41140 5.52523 5.76774 6.28175 6.66926 6.70624 6.81329 7.38525 7.91829 8.48719 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009961 B = 0.004087 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.358777 B = 6848.769325 C = 9120.282880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.535 6.535 5 C -0.118 4.118 6 C 0.126 3.874 7 N -0.400 5.400 8 C -0.414 4.414 9 H 0.108 0.892 10 C 0.030 3.970 11 N -0.846 5.846 12 Si 0.975 3.025 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.247 1.247 16 C 0.481 3.519 17 O -0.626 6.626 18 C -0.086 4.086 19 C -0.033 4.033 20 C 0.116 3.884 21 O -0.482 6.482 22 C -0.057 4.057 23 C -0.009 4.009 24 N -0.008 5.008 25 O -0.156 6.156 26 O -0.220 6.220 27 C -0.027 4.027 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.288 0.712 36 H 0.180 0.820 37 H 0.420 0.580 38 H 0.184 0.816 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -2.197 -3.628 5.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.425 6.425 5 C -0.156 4.156 6 C 0.003 3.997 7 N -0.113 5.113 8 C -0.542 4.542 9 H 0.125 0.875 10 C -0.184 4.184 11 N -0.476 5.476 12 Si 0.796 3.204 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.170 1.170 16 C 0.272 3.728 17 O -0.515 6.515 18 C -0.090 4.090 19 C -0.052 4.052 20 C 0.070 3.930 21 O -0.296 6.296 22 C -0.077 4.077 23 C -0.095 4.095 24 N 0.467 4.533 25 O -0.358 6.358 26 O -0.402 6.402 27 C -0.048 4.048 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.197 0.803 37 H 0.281 0.719 38 H 0.202 0.798 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.916 -1.952 -3.955 5.287 hybrid contribution -0.199 0.340 0.075 0.401 sum 2.718 -1.612 -3.880 5.004 Atomic orbital electron populations 1.23582 0.74719 1.05857 1.02500 1.86510 1.25202 1.32430 1.83838 1.23784 0.92053 0.81293 0.71105 1.90646 1.67810 1.37379 1.46654 1.21682 0.87048 1.00770 1.06133 1.21175 0.82133 0.93027 1.03386 1.42232 1.04732 1.58956 1.05390 1.20494 1.12844 1.26075 0.94739 0.87484 1.27785 0.95233 0.92239 1.03155 1.68885 1.23885 1.17394 1.37418 0.85269 0.79983 0.78606 0.76505 1.19143 1.20775 1.17046 1.18485 0.87030 0.83378 0.83948 1.90623 1.70396 1.58434 1.32062 1.19564 0.93869 0.99333 0.96192 1.23099 0.93832 0.93751 0.94566 1.17810 0.88628 0.96716 0.89890 1.84857 1.74800 1.30742 1.39194 1.21583 1.03467 0.92921 0.89744 1.19867 0.90805 1.03859 0.95007 1.50574 1.02938 0.98775 1.00976 1.96211 0.89312 1.70027 1.80226 1.96308 1.68950 1.42825 1.32117 1.20969 0.90952 0.95540 0.97303 0.84513 0.92164 0.91936 0.86159 0.88112 0.94337 0.87778 0.89998 0.80312 0.71856 0.79842 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.93 10.57 -51.47 -0.54 -11.48 16 3 C 0.47 17.29 7.96 71.24 0.57 17.85 16 4 O -0.54 -22.56 15.73 21.96 0.35 -22.22 16 5 C -0.12 -4.41 6.09 29.85 0.18 -4.22 16 6 C 0.13 5.69 4.17 86.38 0.36 6.05 16 7 N -0.40 -17.79 2.47 -634.09 -1.56 -19.36 16 8 C -0.41 -17.30 6.34 86.70 0.55 -16.75 16 9 H 0.11 4.22 6.36 -2.91 -0.02 4.20 16 10 C 0.03 1.25 5.29 87.30 0.46 1.72 16 11 N -0.85 -38.46 11.21 23.25 0.26 -38.20 16 12 Si 0.97 32.40 29.65 68.60 2.03 34.43 16 13 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 14 H -0.28 -9.50 7.11 99.48 0.71 -8.79 16 15 H -0.25 -7.66 7.11 99.48 0.71 -6.96 16 16 C 0.48 21.45 7.33 86.75 0.64 22.08 16 17 O -0.63 -31.60 16.44 -3.64 -0.06 -31.66 16 18 C -0.09 -3.12 5.47 -20.10 -0.11 -3.23 16 19 C -0.03 -1.03 7.72 22.65 0.17 -0.86 16 20 C 0.12 2.80 6.70 22.47 0.15 2.95 16 21 O -0.48 -9.15 13.50 -92.44 -1.25 -10.39 16 22 C -0.06 -1.37 9.51 22.43 0.21 -1.16 16 23 C -0.01 -0.26 6.87 36.32 0.25 -0.02 16 24 N -0.01 -0.28 4.98 -46.59 -0.23 -0.51 16 25 O -0.16 -4.92 19.14 3.51 0.07 -4.86 16 26 O -0.22 -8.13 19.14 3.51 0.07 -8.06 16 27 C -0.03 -0.92 9.13 22.55 0.21 -0.71 16 28 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 32 H 0.10 3.74 8.14 -2.39 -0.02 3.73 16 33 H 0.04 1.92 7.52 -2.39 -0.02 1.91 16 34 H 0.10 5.03 5.40 -2.39 -0.01 5.02 16 35 H 0.29 12.29 8.26 -92.71 -0.77 11.53 16 36 H 0.18 6.05 5.59 -2.91 -0.02 6.03 16 37 H 0.42 3.49 9.06 -74.05 -0.67 2.82 16 38 H 0.18 3.43 7.56 -2.91 -0.02 3.41 16 39 H 0.15 5.34 7.48 -2.91 -0.02 5.31 16 Total: -1.00 -62.67 355.22 4.44 -58.23 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.48 Total: 28.60 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 4.84 Total: 25.47 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -1.54 Total: -58.07 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -1.37 Total: -88.67 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: 2.03 Total: 34.43 kcal Total: -62.67 4.44 -58.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632394927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.675 kcal (2) G-P(sol) polarization free energy of solvation -62.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds