Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47492 * 269.99700 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99486 * 3 2 1 6 6 H 1.48504 * 109.47253 * 149.99553 * 3 2 1 7 7 C 1.37882 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00188 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42908 * 112.94410 * 309.66788 * 9 7 2 11 11 C 1.53947 * 113.74258 * 81.25596 * 9 7 2 12 12 N 1.47925 * 85.99719 * 138.00758 * 11 9 7 13 13 C 1.34775 * 134.49989 * 155.33807 * 12 11 9 14 14 O 1.21741 * 119.99564 * 174.89929 * 13 12 11 15 15 C 1.46324 * 120.00284 * 354.90707 * 13 12 11 16 16 C 1.38654 * 126.78690 * 98.64209 * 15 13 12 17 17 C 1.50705 * 125.91416 * 0.02562 * 16 15 13 18 18 F 1.39892 * 109.47287 * 209.99836 * 17 16 15 19 19 F 1.39899 * 109.46859 * 330.00012 * 17 16 15 20 20 N 1.32371 * 108.17724 * 179.97438 * 16 15 13 21 21 C 1.32865 * 109.74108 * 359.97438 * 20 16 15 22 22 C 1.40868 * 132.71372 * 179.97438 * 21 20 16 23 23 N 1.31185 * 119.76132 * 180.02562 * 22 21 20 24 24 C 1.33206 * 121.28030 * 0.02562 * 23 22 21 25 25 C 1.35407 * 121.08451 * 0.02562 * 24 23 22 26 26 N 1.36069 * 119.77852 * 359.69132 * 25 24 23 27 27 C 1.47580 * 91.00489 * 335.36092 * 12 11 9 28 28 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 29 29 H 0.96706 * 113.99837 * 50.33019 * 10 9 7 30 30 H 1.09004 * 113.77324 * 252.36651 * 11 9 7 31 31 H 1.09005 * 113.76773 * 23.75953 * 11 9 7 32 32 H 1.09002 * 109.46897 * 89.99692 * 17 16 15 33 33 H 1.08005 * 120.12206 * 359.97438 * 22 21 20 34 34 H 1.08010 * 119.46136 * 180.02562 * 24 23 22 35 35 H 1.08005 * 120.11353 * 179.97438 * 25 24 23 36 36 H 1.09007 * 113.76612 * 270.33976 * 27 12 11 37 37 H 1.08997 * 113.87497 * 138.95145 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0690 -0.3543 -1.0119 11 6 4.1308 -0.9796 1.3941 12 7 5.0933 -2.0370 1.0149 13 6 6.3457 -2.3557 1.3975 14 8 6.8756 -3.3637 0.9669 15 6 7.0684 -1.4905 2.3303 16 6 7.2060 -1.6753 3.6975 17 6 6.6322 -2.8163 4.4975 18 9 6.3594 -2.3824 5.7992 19 9 5.4492 -3.2590 3.8959 20 7 7.9297 -0.6767 4.1784 21 6 8.2694 0.1468 3.1926 22 6 9.0195 1.3387 3.1587 23 7 9.2021 1.9610 2.0184 24 6 8.6903 1.4886 0.8830 25 6 7.9617 0.3474 0.8660 26 7 7.7500 -0.3365 2.0232 27 6 4.1314 -2.6024 0.0490 28 1 -0.4850 0.8400 -0.0004 29 1 3.7031 0.5407 -1.0262 30 1 4.5843 0.0027 1.5268 31 1 3.4716 -1.2597 2.2158 32 1 7.3514 -3.6347 4.5305 33 1 9.4420 1.7392 4.0684 34 1 8.8593 2.0246 -0.0394 35 1 7.5537 -0.0212 -0.0636 36 1 3.4723 -3.3581 0.4765 37 1 4.5835 -2.9156 -0.8920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650007485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = -16.410050 kcal Electronic energy + Delta-G solvation = -30168.218778 eV Core-core repulsion = 25585.562357 eV Total energy + Delta-G solvation = -4582.656421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.07524 -47.09075 -43.51310 -39.96475 -38.91888 -37.74792 -34.85423 -34.66864 -32.68103 -31.75771 -30.48374 -28.99649 -27.47511 -26.19071 -25.59487 -24.39124 -23.89983 -21.93352 -20.71085 -19.62213 -18.39987 -18.20242 -17.79310 -17.61851 -17.20715 -16.76805 -16.64769 -16.45842 -16.26574 -15.82468 -15.60078 -15.10124 -14.76520 -13.91280 -13.88807 -13.77022 -13.45919 -13.40596 -13.35213 -13.22570 -12.93094 -12.88320 -12.52835 -12.34307 -12.08171 -11.66338 -11.45795 -11.13257 -10.91128 -10.77901 -10.42183 -10.29768 -10.22110 -9.55740 -9.46949 -9.19665 -8.89834 -8.53938 -8.34381 -6.53738 -4.60819 0.05505 0.58207 1.62253 2.02595 2.57077 2.85978 2.86822 3.02286 3.05100 3.12418 3.13758 3.69281 3.82945 3.86326 3.90562 4.00219 4.29442 4.46469 4.54757 4.70055 4.73848 4.85265 4.92178 5.10450 5.36693 5.38710 5.63194 5.72935 5.78491 5.82957 6.04710 6.10503 6.17256 6.26368 6.43218 7.03543 7.04440 7.27270 7.84002 7.89703 8.12762 8.31749 8.50959 9.02622 10.58341 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.005211 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.032893 B = 5372.399548 C = 6487.985156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.083 3.917 3 Si 0.856 3.144 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.198 3.802 10 O -0.555 6.555 11 C 0.065 3.935 12 N -0.614 5.614 13 C 0.606 3.394 14 O -0.533 6.533 15 C -0.040 4.040 16 C 0.029 3.971 17 C 0.359 3.641 18 F -0.184 7.184 19 F -0.183 7.183 20 N -0.433 5.433 21 C 0.168 3.832 22 C 0.197 3.803 23 N -0.454 5.454 24 C 0.048 3.952 25 C 0.020 3.980 26 N -0.318 5.318 27 C 0.133 3.867 28 H 0.272 0.728 29 H 0.354 0.646 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.195 0.805 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 1.779 5.318 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.123 4.123 3 Si 0.684 3.316 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.157 3.843 10 O -0.366 6.366 11 C -0.058 4.058 12 N -0.347 5.347 13 C 0.391 3.609 14 O -0.410 6.410 15 C -0.162 4.162 16 C -0.112 4.112 17 C 0.304 3.696 18 F -0.165 7.165 19 F -0.164 7.164 20 N -0.153 5.153 21 C -0.075 4.075 22 C 0.015 3.985 23 N -0.165 5.165 24 C -0.091 4.091 25 C -0.105 4.105 26 N 0.010 4.990 27 C 0.012 3.988 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.212 0.788 34 H 0.204 0.796 35 H 0.196 0.804 36 H 0.121 0.879 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.225 1.662 5.525 17.220 hybrid contribution -0.809 0.740 -0.572 1.237 sum 15.416 2.402 4.952 16.369 Atomic orbital electron populations 1.69835 1.06004 1.27741 1.46991 1.24987 0.94906 0.98864 0.93573 0.87387 0.80390 0.84688 0.79103 1.19175 1.20705 1.18607 1.21167 0.87266 0.95866 1.53151 0.88770 1.20531 0.92920 0.87738 0.83119 1.86433 1.67582 1.25789 1.56817 1.24861 0.88204 0.89646 1.03043 1.50254 1.11381 1.32442 1.40593 1.16096 0.81195 0.83938 0.79653 1.90852 1.68676 1.26150 1.55335 1.21003 1.07327 0.91722 0.96144 1.21779 1.01583 0.98130 0.89664 1.19432 0.84027 0.91477 0.74689 1.93040 1.94656 1.91329 1.37457 1.93095 1.50110 1.89783 1.83414 1.70075 1.14938 1.02540 1.27746 1.22102 1.04277 1.00032 0.81109 1.22913 0.91435 0.86293 0.97863 1.68146 1.19444 1.30884 0.98058 1.22356 0.95632 0.92997 0.98068 1.22890 1.02204 0.95272 0.90162 1.42460 1.31623 1.15866 1.09055 1.23420 0.86855 0.97343 0.91202 0.91723 0.79425 0.91885 0.87949 0.84692 0.78801 0.79588 0.80384 0.87944 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 13.96 55.43 0.77 -22.86 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.86 18.14 24.31 -169.99 -4.13 14.01 16 4 H -0.27 -5.42 7.05 56.52 0.40 -5.02 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.19 5.16 56.52 0.29 -4.90 16 7 C -0.54 -13.20 9.20 -34.44 -0.32 -13.52 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.20 4.21 1.05 -90.85 -0.10 4.12 16 10 O -0.56 -11.88 13.35 -35.23 -0.47 -12.35 16 11 C 0.07 1.28 7.08 -2.77 -0.02 1.26 16 12 N -0.61 -11.72 3.62 -179.69 -0.65 -12.37 16 13 C 0.61 11.40 6.39 -13.01 -0.08 11.31 16 14 O -0.53 -11.11 17.84 5.15 0.09 -11.01 16 15 C -0.04 -0.68 6.48 -81.92 -0.53 -1.21 16 16 C 0.03 0.45 6.79 -82.20 -0.56 -0.11 16 17 C 0.36 4.90 5.78 36.01 0.21 5.11 16 18 F -0.18 -2.60 17.28 2.25 0.04 -2.56 16 19 F -0.18 -2.90 15.88 2.25 0.04 -2.87 16 20 N -0.43 -6.50 11.18 -8.44 -0.09 -6.59 16 21 C 0.17 2.32 7.81 -156.09 -1.22 1.10 16 22 C 0.20 2.09 11.33 -16.83 -0.19 1.90 16 23 N -0.45 -4.93 10.42 -13.10 -0.14 -5.07 16 24 C 0.05 0.49 11.08 -17.97 -0.20 0.29 16 25 C 0.02 0.25 10.95 -16.68 -0.18 0.06 16 26 N -0.32 -4.74 2.96 -58.85 -0.17 -4.92 16 27 C 0.13 2.56 8.23 -2.97 -0.02 2.53 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.35 7.31 3.57 45.56 0.16 7.47 16 30 H 0.06 1.23 6.83 -51.93 -0.35 0.87 16 31 H 0.10 2.00 8.09 -51.93 -0.42 1.58 16 32 H 0.14 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.20 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.19 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.10 1.86 8.09 -51.92 -0.42 1.43 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -31.03 331.16 -5.85 -36.88 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.82 Total: 9.87 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: -3.31 Total: 14.85 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.28 Total: -51.80 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.38 Total: -23.36 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.13 Total: 14.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.03 -5.85 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650007485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.471 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds