Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47492 * 269.99700 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99486 * 3 2 1 6 6 H 1.48504 * 109.47253 * 149.99553 * 3 2 1 7 7 C 1.37882 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00188 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42908 * 112.94410 * 309.66788 * 9 7 2 11 11 C 1.53947 * 113.74258 * 81.25596 * 9 7 2 12 12 N 1.47925 * 85.99719 * 138.00758 * 11 9 7 13 13 C 1.34775 * 134.49989 * 155.33807 * 12 11 9 14 14 O 1.21741 * 119.99564 * 174.89929 * 13 12 11 15 15 C 1.46324 * 120.00284 * 354.90707 * 13 12 11 16 16 C 1.38654 * 126.78690 * 98.64209 * 15 13 12 17 17 C 1.50705 * 125.91416 * 0.02562 * 16 15 13 18 18 F 1.39892 * 109.47287 * 209.99836 * 17 16 15 19 19 F 1.39899 * 109.46859 * 330.00012 * 17 16 15 20 20 N 1.32371 * 108.17724 * 179.97438 * 16 15 13 21 21 C 1.32865 * 109.74108 * 359.97438 * 20 16 15 22 22 C 1.40868 * 132.71372 * 179.97438 * 21 20 16 23 23 N 1.31185 * 119.76132 * 180.02562 * 22 21 20 24 24 C 1.33206 * 121.28030 * 0.02562 * 23 22 21 25 25 C 1.35407 * 121.08451 * 0.02562 * 24 23 22 26 26 N 1.36069 * 119.77852 * 359.69132 * 25 24 23 27 27 C 1.47580 * 91.00489 * 335.36092 * 12 11 9 28 28 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 29 29 H 0.96706 * 113.99837 * 50.33019 * 10 9 7 30 30 H 1.09004 * 113.77324 * 252.36651 * 11 9 7 31 31 H 1.09005 * 113.76773 * 23.75953 * 11 9 7 32 32 H 1.09002 * 109.46897 * 89.99692 * 17 16 15 33 33 H 1.08005 * 120.12206 * 359.97438 * 22 21 20 34 34 H 1.08010 * 119.46136 * 180.02562 * 24 23 22 35 35 H 1.08005 * 120.11353 * 179.97438 * 25 24 23 36 36 H 1.09007 * 113.76612 * 270.33976 * 27 12 11 37 37 H 1.08997 * 113.87497 * 138.95145 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 4.0690 -0.3543 -1.0119 11 6 4.1308 -0.9796 1.3941 12 7 5.0933 -2.0370 1.0149 13 6 6.3457 -2.3557 1.3975 14 8 6.8756 -3.3637 0.9669 15 6 7.0684 -1.4905 2.3303 16 6 7.2060 -1.6753 3.6975 17 6 6.6322 -2.8163 4.4975 18 9 6.3594 -2.3824 5.7992 19 9 5.4492 -3.2590 3.8959 20 7 7.9297 -0.6767 4.1784 21 6 8.2694 0.1468 3.1926 22 6 9.0195 1.3387 3.1587 23 7 9.2021 1.9610 2.0184 24 6 8.6903 1.4886 0.8830 25 6 7.9617 0.3474 0.8660 26 7 7.7500 -0.3365 2.0232 27 6 4.1314 -2.6024 0.0490 28 1 -0.4850 0.8400 -0.0004 29 1 3.7031 0.5407 -1.0262 30 1 4.5843 0.0027 1.5268 31 1 3.4716 -1.2597 2.2158 32 1 7.3514 -3.6347 4.5305 33 1 9.4420 1.7392 4.0684 34 1 8.8593 2.0246 -0.0394 35 1 7.5537 -0.0212 -0.0636 36 1 3.4723 -3.3581 0.4765 37 1 4.5835 -2.9156 -0.8920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650007485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = -39.496533 kcal Electronic energy + Delta-G solvation = -30169.219883 eV Core-core repulsion = 25585.562357 eV Total energy + Delta-G solvation = -4583.657526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.18451 -48.20811 -44.54878 -41.50309 -39.95062 -39.24511 -36.34791 -35.83329 -34.60449 -32.81507 -31.62742 -30.45194 -28.55127 -27.73823 -27.26033 -25.58138 -24.87744 -23.12991 -22.09900 -21.02636 -19.73425 -19.34245 -19.22780 -18.84326 -18.49374 -18.22912 -17.85961 -17.69191 -17.39518 -17.12037 -16.79506 -16.20811 -15.99426 -15.66374 -15.34545 -15.03209 -14.96045 -14.63224 -14.53497 -14.39541 -14.20585 -14.17931 -13.96562 -13.86552 -13.12148 -13.10490 -12.78255 -12.69502 -12.53812 -12.12641 -12.04648 -11.69794 -11.31473 -11.23458 -11.03401 -10.66571 -10.49971 -9.94247 -9.54116 -8.47373 -6.60072 -0.84075 -0.46369 0.50611 0.94951 1.15910 1.20355 1.21476 1.33614 1.69871 2.07206 2.11464 2.22550 2.62645 2.70183 2.86860 2.97960 3.03945 3.07004 3.23283 3.47073 3.68936 3.72763 3.84552 3.88509 4.15267 4.22408 4.26525 4.44918 4.45665 4.53623 4.59442 4.65772 4.82155 4.91554 5.19977 5.26422 5.98407 5.99297 6.34342 6.38018 6.50070 6.57655 6.66710 7.07655 8.67935 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.005211 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.032893 B = 5372.399548 C = 6487.985156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 0.914 3.086 4 H -0.248 1.248 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.194 3.806 10 O -0.555 6.555 11 C 0.078 3.922 12 N -0.614 5.614 13 C 0.616 3.384 14 O -0.558 6.558 15 C -0.078 4.078 16 C 0.028 3.972 17 C 0.354 3.646 18 F -0.188 7.188 19 F -0.199 7.199 20 N -0.446 5.446 21 C 0.165 3.835 22 C 0.207 3.793 23 N -0.455 5.455 24 C 0.072 3.928 25 C -0.011 4.011 26 N -0.319 5.319 27 C 0.132 3.868 28 H 0.274 0.726 29 H 0.358 0.642 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.231 0.769 34 H 0.224 0.776 35 H 0.180 0.820 36 H 0.108 0.892 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.678 3.882 5.636 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.171 4.171 3 Si 0.739 3.261 4 H -0.173 1.173 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.153 3.847 10 O -0.366 6.366 11 C -0.045 4.045 12 N -0.346 5.346 13 C 0.402 3.598 14 O -0.437 6.437 15 C -0.199 4.199 16 C -0.114 4.114 17 C 0.299 3.701 18 F -0.169 7.169 19 F -0.180 7.180 20 N -0.166 5.166 21 C -0.078 4.078 22 C 0.026 3.974 23 N -0.167 5.167 24 C -0.066 4.066 25 C -0.135 4.135 26 N 0.009 4.991 27 C 0.011 3.989 28 H 0.084 0.916 29 H 0.210 0.790 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.191 0.809 33 H 0.248 0.752 34 H 0.241 0.759 35 H 0.197 0.803 36 H 0.126 0.874 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.936 3.765 5.838 20.170 hybrid contribution -1.584 0.115 -0.698 1.735 sum 17.352 3.880 5.140 18.509 Atomic orbital electron populations 1.69979 1.07929 1.28825 1.48911 1.25784 0.95584 1.02679 0.93051 0.86413 0.79767 0.79712 0.80205 1.17293 1.21098 1.16392 1.21297 0.89210 0.94786 1.52741 0.92091 1.20459 0.91044 0.89118 0.84084 1.86429 1.67223 1.26052 1.56902 1.24594 0.88124 0.90176 1.01576 1.50156 1.11611 1.32231 1.40614 1.16233 0.80618 0.83748 0.79175 1.90822 1.69039 1.27447 1.56434 1.20606 1.09807 0.93357 0.96158 1.22039 1.01331 0.98531 0.89468 1.19893 0.83970 0.92167 0.74055 1.93025 1.94705 1.91495 1.37645 1.93058 1.51284 1.89922 1.83751 1.70077 1.15559 1.02788 1.28217 1.22700 1.04023 1.00540 0.80586 1.23615 0.89889 0.84697 0.99159 1.68300 1.19352 1.30693 0.98311 1.23006 0.92879 0.91599 0.99158 1.23224 1.04161 0.96377 0.89780 1.42561 1.31134 1.15350 1.10065 1.23392 0.87145 0.96503 0.91855 0.91644 0.79014 0.91204 0.88204 0.80933 0.75236 0.75925 0.80292 0.87399 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.18 13.96 21.45 0.30 -50.88 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.91 36.57 24.31 68.60 1.67 38.23 16 4 H -0.25 -9.20 7.05 99.48 0.70 -8.50 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.24 -8.67 5.16 99.48 0.51 -8.16 16 7 C -0.54 -27.21 9.20 25.60 0.24 -26.97 16 8 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 9 C 0.19 8.17 1.05 -10.88 -0.01 8.16 16 10 O -0.55 -22.81 13.35 -148.98 -1.99 -24.80 16 11 C 0.08 3.00 7.08 86.42 0.61 3.61 16 12 N -0.61 -23.12 3.62 -844.43 -3.05 -26.17 16 13 C 0.62 22.85 6.39 86.35 0.55 23.40 16 14 O -0.56 -23.21 17.84 -4.48 -0.08 -23.29 16 15 C -0.08 -2.55 6.48 40.46 0.26 -2.28 16 16 C 0.03 0.84 6.79 42.58 0.29 1.13 16 17 C 0.35 9.31 5.78 71.24 0.41 9.73 16 18 F -0.19 -5.13 17.28 44.97 0.78 -4.35 16 19 F -0.20 -6.27 15.88 44.97 0.71 -5.55 16 20 N -0.45 -12.60 11.18 -180.62 -2.02 -14.62 16 21 C 0.17 4.15 7.81 134.10 1.05 5.20 16 22 C 0.21 3.63 11.33 85.43 0.97 4.60 16 23 N -0.46 -8.01 10.42 -195.35 -2.04 -10.04 16 24 C 0.07 1.19 11.08 83.83 0.93 2.11 16 25 C -0.01 -0.24 10.95 83.38 0.91 0.68 16 26 N -0.32 -8.93 2.96 -340.12 -1.01 -9.94 16 27 C 0.13 5.10 8.23 86.48 0.71 5.81 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.36 13.88 3.57 -74.05 -0.26 13.61 16 30 H 0.07 2.59 6.83 -2.38 -0.02 2.57 16 31 H 0.10 3.88 8.09 -2.38 -0.02 3.86 16 32 H 0.17 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.18 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.11 3.99 8.09 -2.38 -0.02 3.97 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -68.03 331.16 1.36 -66.67 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.70 Total: 27.54 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 7.38 Total: 37.19 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -7.81 Total: -111.65 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.07 Total: -48.09 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 1.49 Total: -9.90 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.67 Total: 38.23 kcal Total: -68.03 1.36 -66.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650007485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.176 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds