Wall clock time and date at job start Tue Mar 31 2020 20:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.52576 * 109.22839 * 271.23894 * 19 18 16 21 21 C 1.53102 * 109.95797 * 169.00336 * 20 19 18 22 22 S 1.81749 * 108.84060 * 63.02723 * 21 20 19 23 23 O 1.42098 * 109.47157 * 190.74455 * 22 21 20 24 24 C 1.81756 * 102.21805 * 306.73532 * 22 21 20 25 25 C 1.52584 * 109.22635 * 149.99833 * 19 18 16 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 1.09000 * 109.22199 * 30.60310 * 19 18 16 34 34 H 1.09004 * 109.39198 * 289.14722 * 20 19 18 35 35 H 1.08994 * 109.39526 * 48.85574 * 20 19 18 36 36 H 1.08991 * 109.57643 * 303.21538 * 21 20 19 37 37 H 1.09003 * 109.68414 * 182.89314 * 21 20 19 38 38 H 1.09004 * 109.57473 * 293.45700 * 24 22 21 39 39 H 1.08999 * 109.57678 * 173.07556 * 24 22 21 40 40 H 1.08990 * 109.39266 * 311.15089 * 25 19 18 41 41 H 1.09005 * 109.38473 * 70.85029 * 25 19 18 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6176 -7.1972 -1.8881 18 8 0.6629 -8.9978 -1.0337 19 6 0.4679 -9.4957 -2.3837 20 6 -0.8685 -8.9891 -2.9179 21 6 -0.9710 -9.2692 -4.4196 22 16 -0.9378 -11.0668 -4.6850 23 8 -0.7814 -11.3382 -6.0711 24 6 0.5702 -11.5589 -3.7976 25 6 0.4992 -11.0211 -2.3660 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.2715 -9.1276 -3.0215 34 1 -1.6816 -9.4968 -2.3989 35 1 -0.9445 -7.9158 -2.7440 36 1 -0.1288 -8.8082 -4.9353 37 1 -1.9044 -8.8601 -4.8065 38 1 1.4426 -11.1426 -4.3013 39 1 0.6429 -12.6462 -3.7761 40 1 1.3730 -11.3587 -1.8089 41 1 -0.4032 -11.3960 -1.8830 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650481406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:35 Heat of formation + Delta-G solvation = -130.749116 kcal Electronic energy + Delta-G solvation = -26110.868664 eV Core-core repulsion = 22148.342108 eV Total energy + Delta-G solvation = -3962.526556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72167 -39.06607 -37.63823 -36.48616 -36.05855 -35.16757 -32.47765 -32.09238 -31.97429 -29.31418 -27.94679 -26.64951 -25.26709 -23.73487 -22.28020 -21.62849 -21.05465 -20.35226 -18.04726 -17.78197 -17.60228 -17.04356 -16.68963 -16.27572 -15.68637 -15.51270 -15.11179 -14.78983 -14.70931 -14.44518 -14.21471 -13.86635 -13.67373 -13.54024 -13.42988 -13.21046 -12.74458 -12.51920 -12.47679 -12.23458 -11.98420 -11.89632 -11.76193 -11.59004 -11.30023 -11.23456 -10.89369 -10.83142 -10.74682 -10.67730 -10.47933 -10.35470 -10.09425 -9.37443 -8.84929 -8.66298 -8.15180 -7.26451 -6.45522 -4.04767 1.14571 1.90963 2.10211 2.29323 2.33567 2.67296 3.12835 3.13831 3.16477 3.39301 3.95770 4.14453 4.31405 4.41081 4.49222 4.61205 4.69109 4.70883 4.85300 4.90741 5.07511 5.11974 5.22053 5.29756 5.34714 5.44992 5.47637 5.55142 5.59165 5.67223 5.70948 5.76936 5.87952 6.12546 6.28652 6.38829 6.61436 6.86444 7.03514 7.18883 7.32405 7.40287 7.76521 7.83401 7.99078 8.99988 9.69575 10.72494 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.002208 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.527870 B =12679.993158 C =13625.781388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.045 4.045 15 C -0.064 4.064 16 C 0.458 3.542 17 O -0.487 6.487 18 O -0.352 6.352 19 C 0.074 3.926 20 C -0.113 4.113 21 C -0.436 4.436 22 S 1.238 4.762 23 O -0.854 6.854 24 C -0.440 4.440 25 C -0.091 4.091 26 C -0.172 4.172 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -23.235 -0.045 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.101 4.101 16 C 0.300 3.700 17 O -0.372 6.372 18 O -0.270 6.270 19 C 0.018 3.982 20 C -0.152 4.152 21 C -0.574 4.574 22 S 1.436 4.564 23 O -0.850 6.850 24 C -0.577 4.577 25 C -0.130 4.130 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.165 -23.404 -0.948 23.636 hybrid contribution 2.532 2.027 -1.090 3.422 sum -0.634 -21.377 -2.038 21.483 Atomic orbital electron populations 1.70030 1.05950 1.27770 1.46065 1.25282 0.95848 0.98805 0.96539 0.85783 0.78706 0.79775 0.79183 1.19532 1.20259 1.19476 1.21273 0.91766 0.80818 1.53006 0.89144 1.83974 1.34229 1.11368 1.78535 1.19268 0.90253 0.87994 0.92473 1.21214 0.93853 0.99069 1.10499 1.20690 0.98476 0.92271 0.97844 1.20366 0.93204 0.97053 1.10825 1.18666 0.93332 0.91541 1.00976 1.20270 1.03665 0.95182 0.90970 1.23929 0.74087 0.78883 0.93096 1.90726 1.46730 1.59306 1.40447 1.86554 1.72397 1.36226 1.31839 1.22741 0.98758 0.94250 0.82409 1.21525 0.97202 1.04030 0.92438 1.27552 1.08377 1.20107 1.01325 1.70537 1.03134 0.89679 0.93025 1.93125 1.82867 1.78931 1.30059 1.27586 1.17276 1.08316 1.04534 1.21132 1.05316 0.91967 0.94548 1.19958 0.99143 0.89961 1.10109 0.91970 0.85509 0.87344 0.87785 0.87145 0.86908 0.89921 0.88971 0.89831 0.89086 0.86008 0.89230 0.85924 0.89714 0.88828 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 10 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 12 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.20 -3.40 9.70 -39.54 -0.38 -3.78 16 14 C -0.04 -0.78 4.37 -104.65 -0.46 -1.24 16 15 C -0.06 -0.80 5.94 -29.03 -0.17 -0.97 16 16 C 0.46 6.38 7.86 36.01 0.28 6.66 16 17 O -0.49 -8.79 15.26 -18.75 -0.29 -9.08 16 18 O -0.35 -3.83 9.86 -39.24 -0.39 -4.22 16 19 C 0.07 0.68 2.18 -27.16 -0.06 0.62 16 20 C -0.11 -0.91 5.36 -26.90 -0.14 -1.05 16 21 C -0.44 -3.44 6.44 37.21 0.24 -3.20 16 22 S 1.24 8.03 13.75 -107.50 -1.48 6.55 16 23 O -0.85 -11.62 18.14 -35.23 -0.64 -12.26 16 24 C -0.44 -2.61 6.44 37.20 0.24 -2.37 16 25 C -0.09 -0.51 5.40 -26.90 -0.15 -0.66 16 26 C -0.17 -3.64 9.65 -39.40 -0.38 -4.02 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 32 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.08 0.95 7.09 -51.93 -0.37 0.59 16 34 H 0.09 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.25 8.06 -51.93 -0.42 -0.16 16 42 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -38.92 366.99 -8.88 -47.79 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.55 Total: 3.24 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -1.80 Total: -23.43 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.76 Total: -24.61 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.31 Total: -30.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.48 Total: 6.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.92 -8.88 -47.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650481406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.955 kcal (2) G-P(sol) polarization free energy of solvation -38.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds