Wall clock time and date at job start Tue Mar 31 2020 20:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.52576 * 109.22839 * 271.23894 * 19 18 16 21 21 C 1.53102 * 109.95797 * 169.00336 * 20 19 18 22 22 S 1.81749 * 108.84060 * 63.02723 * 21 20 19 23 23 O 1.42098 * 109.47157 * 190.74455 * 22 21 20 24 24 C 1.81756 * 102.21805 * 306.73532 * 22 21 20 25 25 C 1.52584 * 109.22635 * 149.99833 * 19 18 16 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 1.09000 * 109.22199 * 30.60310 * 19 18 16 34 34 H 1.09004 * 109.39198 * 289.14722 * 20 19 18 35 35 H 1.08994 * 109.39526 * 48.85574 * 20 19 18 36 36 H 1.08991 * 109.57643 * 303.21538 * 21 20 19 37 37 H 1.09003 * 109.68414 * 182.89314 * 21 20 19 38 38 H 1.09004 * 109.57473 * 293.45700 * 24 22 21 39 39 H 1.08999 * 109.57678 * 173.07556 * 24 22 21 40 40 H 1.08990 * 109.39266 * 311.15089 * 25 19 18 41 41 H 1.09005 * 109.38473 * 70.85029 * 25 19 18 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6176 -7.1972 -1.8881 18 8 0.6629 -8.9978 -1.0337 19 6 0.4679 -9.4957 -2.3837 20 6 -0.8685 -8.9891 -2.9179 21 6 -0.9710 -9.2692 -4.4196 22 16 -0.9378 -11.0668 -4.6850 23 8 -0.7814 -11.3382 -6.0711 24 6 0.5702 -11.5589 -3.7976 25 6 0.4992 -11.0211 -2.3660 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.2715 -9.1276 -3.0215 34 1 -1.6816 -9.4968 -2.3989 35 1 -0.9445 -7.9158 -2.7440 36 1 -0.1288 -8.8082 -4.9353 37 1 -1.9044 -8.8601 -4.8065 38 1 1.4426 -11.1426 -4.3013 39 1 0.6429 -12.6462 -3.7761 40 1 1.3730 -11.3587 -1.8089 41 1 -0.4032 -11.3960 -1.8830 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650481406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:34 Heat of formation + Delta-G solvation = -158.248318 kcal Electronic energy + Delta-G solvation = -26112.061119 eV Core-core repulsion = 22148.342108 eV Total energy + Delta-G solvation = -3963.719011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77930 -40.72779 -38.79935 -37.97828 -36.98320 -36.00297 -34.36928 -33.58175 -32.56504 -30.96368 -29.16392 -27.65789 -27.17823 -24.34711 -23.55693 -23.17131 -22.00321 -21.58508 -19.52561 -18.89767 -18.82331 -18.48128 -17.58088 -17.32677 -16.77973 -16.50000 -16.32805 -16.16218 -16.12481 -15.53812 -15.46440 -15.23262 -15.00167 -14.61802 -14.45533 -14.25973 -14.02386 -13.80394 -13.62902 -13.32495 -13.12316 -12.97832 -12.84409 -12.55351 -12.53190 -12.47395 -12.44045 -12.26084 -12.15561 -11.89878 -11.60772 -11.50087 -11.23705 -10.81650 -10.80423 -9.71632 -9.34918 -9.02244 -8.48761 -6.17395 0.41022 0.56455 0.71473 1.21699 1.32893 1.43295 1.49296 1.52227 1.66186 2.16202 2.72804 2.82136 3.13970 3.39076 3.52096 3.65197 3.68094 3.85771 3.90493 3.97065 4.07139 4.11770 4.26179 4.28729 4.38733 4.46731 4.54322 4.62596 4.65222 4.70974 4.81896 4.93509 4.97018 5.01424 5.09586 5.11700 5.14185 5.26569 5.48546 5.60304 5.68130 5.70705 6.00386 6.19262 6.77669 6.95702 7.76329 8.74404 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.002208 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.527870 B =12679.993158 C =13625.781388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.416 4.416 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.110 3.890 11 C -0.244 4.244 12 C -0.075 4.075 13 C -0.178 4.178 14 C -0.037 4.037 15 C -0.062 4.062 16 C 0.464 3.536 17 O -0.540 6.540 18 O -0.335 6.335 19 C 0.064 3.936 20 C -0.114 4.114 21 C -0.441 4.441 22 S 1.311 4.689 23 O -0.926 6.926 24 C -0.437 4.437 25 C -0.085 4.085 26 C -0.189 4.189 27 H 0.273 0.727 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.137 0.863 33 H 0.050 0.950 34 H 0.138 0.862 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -26.682 1.696 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.060 3.940 11 C -0.263 4.263 12 C -0.093 4.093 13 C -0.196 4.196 14 C -0.037 4.037 15 C -0.098 4.098 16 C 0.308 3.692 17 O -0.429 6.429 18 O -0.252 6.252 19 C 0.009 3.991 20 C -0.152 4.152 21 C -0.578 4.578 22 S 1.510 4.490 23 O -0.922 6.922 24 C -0.575 4.575 25 C -0.123 4.123 26 C -0.208 4.208 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.155 0.845 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.909 -26.920 0.802 27.000 hybrid contribution 2.266 2.724 -1.588 3.883 sum 0.357 -24.196 -0.786 24.211 Atomic orbital electron populations 1.70178 1.07994 1.28875 1.48846 1.26593 0.96883 1.02707 0.95834 0.84655 0.77419 0.74282 0.79897 1.18487 1.19457 1.17912 1.21775 0.92481 0.81502 1.53406 0.88270 1.83934 1.35856 1.12527 1.81629 1.19887 0.91648 0.88014 0.94421 1.21341 0.93216 1.00325 1.11423 1.21143 1.00293 0.91487 0.96350 1.21015 0.93475 0.98178 1.06957 1.19172 0.93814 0.92644 0.98091 1.20413 1.05464 0.93015 0.90944 1.24118 0.73138 0.79139 0.92810 1.90735 1.49176 1.60769 1.42173 1.86530 1.71378 1.34592 1.32699 1.23062 0.98194 0.96783 0.81044 1.21594 0.98300 1.02646 0.92667 1.27627 1.07628 1.21299 1.01283 1.69658 1.02507 0.86951 0.89873 1.92993 1.84785 1.80050 1.34342 1.27585 1.15419 1.10110 1.04402 1.21219 1.08004 0.88667 0.94388 1.20255 0.99529 0.90346 1.10647 0.91799 0.86448 0.83672 0.83215 0.82531 0.84497 0.93142 0.84366 0.93003 0.92358 0.84958 0.91456 0.82954 0.88850 0.84451 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.34 13.67 21.61 0.30 -57.04 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 43.60 29.55 68.60 2.03 45.62 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.42 -24.80 9.49 67.92 0.64 -24.16 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 9 O -0.23 -14.38 9.76 -22.74 -0.22 -14.60 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -11.01 9.17 22.39 0.21 -10.80 16 12 C -0.07 -2.64 10.04 22.25 0.22 -2.41 16 13 C -0.18 -5.54 9.70 22.30 0.22 -5.32 16 14 C -0.04 -1.22 4.37 -19.88 -0.09 -1.30 16 15 C -0.06 -1.32 5.94 29.10 0.17 -1.15 16 16 C 0.46 11.89 7.86 71.24 0.56 12.45 16 17 O -0.54 -19.40 15.26 21.96 0.34 -19.07 16 18 O -0.34 -6.25 9.86 -51.35 -0.51 -6.76 16 19 C 0.06 1.06 2.18 30.32 0.07 1.13 16 20 C -0.11 -1.67 5.36 30.49 0.16 -1.50 16 21 C -0.44 -6.91 6.44 72.02 0.46 -6.44 16 22 S 1.31 14.96 13.75 -56.49 -0.78 14.18 16 23 O -0.93 -25.12 18.14 -148.98 -2.70 -27.82 16 24 C -0.44 -3.98 6.44 72.01 0.46 -3.52 16 25 C -0.08 -0.61 5.40 30.49 0.16 -0.45 16 26 C -0.19 -8.16 9.65 22.39 0.22 -7.94 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 29 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.16 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.14 2.37 8.08 -2.39 -0.02 2.35 16 33 H 0.05 1.18 7.09 -2.39 -0.02 1.16 16 34 H 0.14 0.72 8.06 -2.39 -0.02 0.70 16 35 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.14 -0.12 8.06 -2.38 -0.02 -0.14 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -95.21 366.99 3.58 -91.64 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.04 Total: 20.31 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 4.09 Total: -46.45 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.30 Total: -57.04 kcal Atomic # 8 Polarization: -65.15 SS G_CDS: -3.10 Total: -68.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 14.96 SS G_CDS: -0.78 Total: 14.18 kcal Total: -95.21 3.58 -91.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650481406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.612 kcal (2) G-P(sol) polarization free energy of solvation -95.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds