Wall clock time and date at job start Tue Mar 31 2020 21:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42098 * 109.46850 * 2 1 4 4 C 1.76201 * 102.99899 * 250.94384 * 2 1 3 5 5 C 1.38237 * 119.99925 * 90.00043 * 4 2 1 6 6 C 1.38235 * 119.99896 * 179.97438 * 5 4 2 7 7 C 1.38231 * 120.00192 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00424 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47240 * 89.99493 * 8 7 6 10 10 O 1.20823 * 120.00357 * 0.02562 * 9 8 7 11 11 O 1.34231 * 120.00151 * 180.27984 * 9 8 7 12 12 C 1.45202 * 117.00227 * 179.72494 * 11 9 8 13 13 C 1.53000 * 109.47277 * 179.97438 * 12 11 9 14 14 C 1.50701 * 112.99627 * 53.52120 * 13 12 11 15 15 H 1.07998 * 120.00078 * 245.39650 * 14 13 12 16 16 C 1.37881 * 120.00113 * 65.39670 * 14 13 12 17 17 N 1.31519 * 119.99867 * 6.62006 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 186.62229 * 16 14 13 19 19 H 1.48497 * 109.47176 * 60.00052 * 18 16 14 20 20 H 1.48497 * 109.47133 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47022 * 299.99768 * 18 16 14 22 22 C 1.54034 * 113.81770 * 281.54079 * 13 12 11 23 23 O 1.44183 * 85.51231 * 223.19148 * 22 13 12 24 24 C 1.44181 * 93.34205 * 24.19321 * 23 22 13 25 25 C 1.38240 * 119.99695 * 0.24973 * 7 6 5 26 26 C 1.38231 * 120.00162 * 269.97817 * 4 2 1 27 27 H 1.09005 * 109.46710 * 169.05850 * 1 2 3 28 28 H 1.09000 * 109.47188 * 289.05428 * 1 2 3 29 29 H 1.08995 * 109.47012 * 49.05995 * 1 2 3 30 30 H 1.07999 * 120.00211 * 359.97240 * 5 4 2 31 31 H 1.08007 * 119.99830 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.47145 * 329.99698 * 8 7 6 33 33 H 1.08995 * 109.47469 * 209.99827 * 8 7 6 34 34 H 1.08998 * 109.46910 * 300.00077 * 12 11 9 35 35 H 1.09009 * 109.46988 * 60.00031 * 12 11 9 36 36 H 0.97001 * 119.99896 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.86153 * 337.33144 * 22 13 12 38 38 H 1.08996 * 113.86946 * 109.04633 * 22 13 12 39 39 H 1.08997 * 113.86015 * 221.65769 * 24 23 22 40 40 H 1.09001 * 113.98348 * 89.96395 * 24 23 22 41 41 H 1.08004 * 119.99648 * 179.72542 * 25 7 6 42 42 H 1.08001 * 120.00000 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3659 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8328 -1.4400 -4.1689 8 6 3.1718 -1.9194 -5.5568 9 6 4.6691 -1.9748 -5.7174 10 8 5.3874 -1.6580 -4.7990 11 8 5.2049 -2.3713 -6.8825 12 6 6.6543 -2.3944 -6.9676 13 6 7.0760 -2.8697 -8.3594 14 6 6.4410 -2.0740 -9.4707 15 1 5.7445 -2.5493 -10.1453 16 6 6.7494 -0.7391 -9.6260 17 7 7.6922 -0.1921 -8.8902 18 14 5.8281 0.2924 -10.8817 19 1 4.3798 0.2946 -10.5535 20 1 6.3438 1.6846 -10.8528 21 1 6.0278 -0.2820 -12.2365 22 6 6.9819 -4.3952 -8.5508 23 8 8.2601 -4.2777 -9.2075 24 6 8.5966 -3.0566 -8.5186 25 6 2.6717 -2.3521 -3.1427 26 6 2.3663 -1.9119 -1.8684 27 1 -0.3633 -1.0091 -0.1951 28 1 -0.3633 0.3355 0.9714 29 1 -0.3633 0.6734 -0.7763 30 1 2.2440 1.4070 -2.4584 31 1 2.7984 0.6237 -4.7260 32 1 2.7528 -1.2316 -6.2913 33 1 2.7529 -2.9139 -5.7101 34 1 7.0445 -1.3920 -6.7918 35 1 7.0516 -3.0761 -6.2154 36 1 7.9089 0.7471 -8.9992 37 1 7.0151 -4.9594 -7.6188 38 1 6.1736 -4.7077 -9.2119 39 1 9.0689 -2.3076 -9.1542 40 1 9.1230 -3.2100 -7.5766 41 1 2.7888 -3.4082 -3.3356 42 1 2.2448 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650483561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:13 Heat of formation + Delta-G solvation = -107.685235 kcal Electronic energy + Delta-G solvation = -26418.898404 eV Core-core repulsion = 22457.371972 eV Total energy + Delta-G solvation = -3961.526431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15703 -39.35283 -38.77390 -35.95966 -35.73557 -33.13700 -32.90735 -31.10437 -30.06655 -29.17104 -28.08994 -25.45005 -25.25085 -24.21795 -22.93657 -22.26345 -20.15928 -19.03134 -18.32923 -17.10298 -16.87520 -16.47905 -16.13489 -15.76991 -15.37782 -15.19550 -15.06458 -14.87141 -14.40705 -14.39819 -14.21089 -14.03071 -13.91369 -13.57192 -13.04569 -12.92543 -12.73682 -12.37314 -12.20009 -12.03630 -11.81349 -11.75852 -11.62346 -11.20806 -11.00615 -10.83556 -10.49860 -10.45091 -10.18900 -9.98168 -9.63346 -9.44676 -9.18811 -9.09149 -9.06092 -8.79266 -8.60842 -8.32940 -6.20711 -4.23599 0.69556 1.27544 1.64394 2.43862 2.73916 3.21778 3.24536 3.29872 3.31893 3.60760 3.79428 4.30523 4.52449 4.63412 4.82278 4.85330 4.86190 4.93173 5.14328 5.14967 5.22981 5.34154 5.45870 5.48678 5.62754 5.71228 5.88308 5.89653 6.01540 6.08150 6.13314 6.15175 6.27648 6.35009 6.40920 6.52259 6.78933 6.93757 7.10125 7.25210 7.31251 7.35104 7.75203 8.14259 8.41964 8.73115 9.40044 10.87624 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.002504 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.565525 B =11181.525850 C =11945.526096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.858 6.858 4 C -0.464 4.464 5 C -0.052 4.052 6 C -0.118 4.118 7 C -0.029 4.029 8 C -0.084 4.084 9 C 0.453 3.547 10 O -0.516 6.516 11 O -0.329 6.329 12 C 0.084 3.916 13 C 0.033 3.967 14 C -0.487 4.487 15 H 0.066 0.934 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.028 3.972 23 O -0.388 6.388 24 C 0.050 3.950 25 C -0.122 4.122 26 C -0.044 4.044 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.129 0.871 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 -5.467 16.924 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.529 4.471 3 O -0.854 6.854 4 C -0.561 4.561 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.029 4.029 8 C -0.122 4.122 9 C 0.296 3.704 10 O -0.406 6.406 11 O -0.244 6.244 12 C 0.010 3.990 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.049 4.049 23 O -0.307 6.307 24 C -0.027 4.027 25 C -0.141 4.141 26 C -0.064 4.064 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.147 0.853 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.370 -5.072 17.722 22.772 hybrid contribution -1.193 2.114 -2.246 3.307 sum -14.563 -2.958 15.476 21.456 Atomic orbital electron populations 1.27781 1.22813 1.07851 1.07114 1.69414 0.85761 0.99587 0.92317 1.93118 1.73066 1.37222 1.81953 1.27555 1.12860 0.99738 1.15913 1.21036 0.94505 0.99350 0.92170 1.21152 0.99895 0.95206 0.97426 1.19581 0.95260 0.93766 0.94287 1.20377 0.91032 1.05419 0.95349 1.23224 0.91304 0.74392 0.81490 1.90645 1.63087 1.45109 1.41709 1.86532 1.27071 1.76445 1.34368 1.23459 0.74019 1.02608 0.98920 1.21108 0.92689 0.90618 0.92339 1.20505 1.25532 0.93875 1.12508 0.91628 1.24960 0.94706 0.97784 0.96169 1.69878 1.29159 1.13260 1.40277 0.86548 0.80219 0.79081 0.81604 1.20069 1.21246 1.20023 1.24093 0.86889 0.98393 0.95517 1.89496 1.34475 1.44847 1.61863 1.23920 0.98208 0.85340 0.95246 1.21128 1.00516 0.99636 0.92805 1.20748 0.95380 0.93481 0.96744 0.87116 0.87800 0.90078 0.85636 0.85649 0.86702 0.86736 0.89740 0.94473 0.92474 0.92886 0.90376 0.88209 0.93490 0.85306 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.96 10.70 101.05 1.08 -1.88 16 2 S 1.33 9.99 14.19 -107.50 -1.53 8.47 16 3 O -0.86 -12.51 16.90 -35.23 -0.60 -13.11 16 4 C -0.46 -4.89 5.61 -39.58 -0.22 -5.11 16 5 C -0.05 -0.69 9.44 -39.58 -0.37 -1.07 16 6 C -0.12 -1.63 9.70 -39.59 -0.38 -2.02 16 7 C -0.03 -0.38 4.37 -104.62 -0.46 -0.84 16 8 C -0.08 -1.12 5.94 -29.04 -0.17 -1.29 16 9 C 0.45 8.48 7.95 36.00 0.29 8.76 16 10 O -0.52 -11.07 15.78 -18.75 -0.30 -11.36 16 11 O -0.33 -7.00 9.82 -39.26 -0.39 -7.39 16 12 C 0.08 1.91 4.67 37.16 0.17 2.09 16 13 C 0.03 0.79 0.62 -154.58 -0.10 0.69 16 14 C -0.49 -12.71 7.92 -34.44 -0.27 -12.98 16 15 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.75 5.25 -17.82 -0.09 1.66 16 17 N -0.89 -24.04 11.31 55.43 0.63 -23.41 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.03 0.60 8.35 37.61 0.31 0.91 16 23 O -0.39 -9.14 12.40 -35.23 -0.44 -9.57 16 24 C 0.05 1.17 7.91 37.61 0.30 1.47 16 25 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 26 C -0.04 -0.39 9.75 -39.59 -0.39 -0.78 16 27 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.75 7.45 -52.49 -0.39 1.36 16 31 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 32 H 0.11 1.40 8.09 -51.93 -0.42 0.98 16 33 H 0.11 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.08 2.18 7.21 -51.93 -0.37 1.80 16 35 H 0.04 0.79 8.04 -51.92 -0.42 0.37 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.05 1.00 8.03 -51.93 -0.42 0.58 16 38 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 39 H 0.10 2.53 7.36 -51.93 -0.38 2.14 16 40 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -36.66 374.36 -8.43 -45.09 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.74 Total: 2.08 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -0.69 Total: -12.09 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.63 Total: -23.41 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.71 Total: -41.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 9.99 SS G_CDS: -1.53 Total: 8.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.66 -8.43 -45.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650483561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.595 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds