Wall clock time and date at job start Tue Mar 31 2020 21:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42098 * 109.46850 * 2 1 4 4 C 1.76201 * 102.99899 * 250.94384 * 2 1 3 5 5 C 1.38237 * 119.99925 * 90.00043 * 4 2 1 6 6 C 1.38235 * 119.99896 * 179.97438 * 5 4 2 7 7 C 1.38231 * 120.00192 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00424 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47240 * 89.99493 * 8 7 6 10 10 O 1.20823 * 120.00357 * 0.02562 * 9 8 7 11 11 O 1.34231 * 120.00151 * 180.27984 * 9 8 7 12 12 C 1.45202 * 117.00227 * 179.72494 * 11 9 8 13 13 C 1.53000 * 109.47277 * 179.97438 * 12 11 9 14 14 C 1.50701 * 112.99627 * 53.52120 * 13 12 11 15 15 H 1.07998 * 120.00078 * 245.39650 * 14 13 12 16 16 C 1.37881 * 120.00113 * 65.39670 * 14 13 12 17 17 N 1.31519 * 119.99867 * 6.62006 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 186.62229 * 16 14 13 19 19 H 1.48497 * 109.47176 * 60.00052 * 18 16 14 20 20 H 1.48497 * 109.47133 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47022 * 299.99768 * 18 16 14 22 22 C 1.54034 * 113.81770 * 281.54079 * 13 12 11 23 23 O 1.44183 * 85.51231 * 223.19148 * 22 13 12 24 24 C 1.44181 * 93.34205 * 24.19321 * 23 22 13 25 25 C 1.38240 * 119.99695 * 0.24973 * 7 6 5 26 26 C 1.38231 * 120.00162 * 269.97817 * 4 2 1 27 27 H 1.09005 * 109.46710 * 169.05850 * 1 2 3 28 28 H 1.09000 * 109.47188 * 289.05428 * 1 2 3 29 29 H 1.08995 * 109.47012 * 49.05995 * 1 2 3 30 30 H 1.07999 * 120.00211 * 359.97240 * 5 4 2 31 31 H 1.08007 * 119.99830 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.47145 * 329.99698 * 8 7 6 33 33 H 1.08995 * 109.47469 * 209.99827 * 8 7 6 34 34 H 1.08998 * 109.46910 * 300.00077 * 12 11 9 35 35 H 1.09009 * 109.46988 * 60.00031 * 12 11 9 36 36 H 0.97001 * 119.99896 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.86153 * 337.33144 * 22 13 12 38 38 H 1.08996 * 113.86946 * 109.04633 * 22 13 12 39 39 H 1.08997 * 113.86015 * 221.65769 * 24 23 22 40 40 H 1.09001 * 113.98348 * 89.96395 * 24 23 22 41 41 H 1.08004 * 119.99648 * 179.72542 * 25 7 6 42 42 H 1.08001 * 120.00000 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3659 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8328 -1.4400 -4.1689 8 6 3.1718 -1.9194 -5.5568 9 6 4.6691 -1.9748 -5.7174 10 8 5.3874 -1.6580 -4.7990 11 8 5.2049 -2.3713 -6.8825 12 6 6.6543 -2.3944 -6.9676 13 6 7.0760 -2.8697 -8.3594 14 6 6.4410 -2.0740 -9.4707 15 1 5.7445 -2.5493 -10.1453 16 6 6.7494 -0.7391 -9.6260 17 7 7.6922 -0.1921 -8.8902 18 14 5.8281 0.2924 -10.8817 19 1 4.3798 0.2946 -10.5535 20 1 6.3438 1.6846 -10.8528 21 1 6.0278 -0.2820 -12.2365 22 6 6.9819 -4.3952 -8.5508 23 8 8.2601 -4.2777 -9.2075 24 6 8.5966 -3.0566 -8.5186 25 6 2.6717 -2.3521 -3.1427 26 6 2.3663 -1.9119 -1.8684 27 1 -0.3633 -1.0091 -0.1951 28 1 -0.3633 0.3355 0.9714 29 1 -0.3633 0.6734 -0.7763 30 1 2.2440 1.4070 -2.4584 31 1 2.7984 0.6237 -4.7260 32 1 2.7528 -1.2316 -6.2913 33 1 2.7529 -2.9139 -5.7101 34 1 7.0445 -1.3920 -6.7918 35 1 7.0516 -3.0761 -6.2154 36 1 7.9089 0.7471 -8.9992 37 1 7.0151 -4.9594 -7.6188 38 1 6.1736 -4.7077 -9.2119 39 1 9.0689 -2.3076 -9.1542 40 1 9.1230 -3.2100 -7.5766 41 1 2.7888 -3.4082 -3.3356 42 1 2.2448 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650483561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:12 Heat of formation + Delta-G solvation = -132.815021 kcal Electronic energy + Delta-G solvation = -26419.988113 eV Core-core repulsion = 22457.371972 eV Total energy + Delta-G solvation = -3962.616141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63264 -40.93391 -39.96646 -37.35505 -36.89494 -34.90513 -34.12321 -31.96761 -31.88351 -29.75852 -29.13605 -27.28944 -27.08881 -25.95018 -23.80748 -23.36988 -21.51187 -20.88416 -19.09850 -18.64693 -18.29921 -17.70602 -17.55490 -17.26472 -16.90037 -16.36609 -16.27847 -16.14225 -16.08188 -15.81057 -15.70834 -15.05813 -14.63939 -14.56903 -14.33264 -14.05999 -13.85845 -13.65575 -13.50922 -13.35384 -13.17606 -12.98592 -12.85624 -12.67521 -12.58573 -12.35981 -12.07471 -11.86100 -11.78919 -11.33211 -11.30299 -11.29249 -10.91845 -10.71596 -10.22207 -10.10447 -9.93809 -9.35188 -8.20908 -6.28728 -0.15848 0.38953 0.96085 1.27157 1.40297 1.40881 1.47882 1.73634 1.96426 2.38316 2.68937 2.99526 3.00641 3.21586 3.51540 3.74578 3.83482 4.01404 4.17648 4.20429 4.27109 4.33523 4.41304 4.44836 4.49096 4.51635 4.53210 4.58485 4.65121 4.75476 4.83941 5.02002 5.14207 5.18622 5.20491 5.23938 5.25203 5.47280 5.50002 5.51014 5.70392 5.71910 5.95873 6.21547 6.70049 6.87331 7.37115 8.85639 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.002504 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.565525 B =11181.525850 C =11945.526096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.400 4.600 3 O -0.933 6.933 4 C -0.470 4.470 5 C -0.083 4.083 6 C -0.143 4.143 7 C -0.050 4.050 8 C -0.073 4.073 9 C 0.450 3.550 10 O -0.548 6.548 11 O -0.339 6.339 12 C 0.095 3.905 13 C 0.017 3.983 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.023 3.977 17 N -0.912 5.912 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.270 1.270 22 C 0.039 3.961 23 O -0.403 6.403 24 C 0.053 3.947 25 C -0.125 4.125 26 C -0.032 4.032 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.158 0.842 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.703 -8.237 18.478 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.598 4.402 3 O -0.929 6.929 4 C -0.565 4.565 5 C -0.102 4.102 6 C -0.162 4.162 7 C -0.050 4.050 8 C -0.110 4.110 9 C 0.295 3.705 10 O -0.439 6.439 11 O -0.255 6.255 12 C 0.021 3.979 13 C 0.016 3.984 14 C -0.536 4.536 15 H 0.079 0.921 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.775 3.225 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.037 4.037 23 O -0.322 6.322 24 C -0.024 4.024 25 C -0.144 4.144 26 C -0.051 4.051 27 H 0.164 0.836 28 H 0.140 0.860 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.176 0.824 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.604 -7.852 19.256 25.999 hybrid contribution -0.595 2.927 -2.623 3.975 sum -16.199 -4.925 16.633 23.734 Atomic orbital electron populations 1.27737 1.20331 1.09660 1.07492 1.68463 0.86094 0.96363 0.89244 1.92990 1.76086 1.40992 1.82816 1.27981 1.11974 1.00415 1.16179 1.21033 0.96767 0.99125 0.93245 1.21193 1.01533 0.95978 0.97497 1.19686 0.96696 0.93679 0.94982 1.20494 0.86702 1.07826 0.96006 1.24287 0.93337 0.72813 0.80089 1.90625 1.64377 1.46401 1.42515 1.86532 1.25906 1.77013 1.36007 1.23098 0.75342 1.00663 0.98772 1.21178 0.92702 0.92429 0.92081 1.20774 1.25412 0.94378 1.13054 0.92067 1.25614 0.95390 0.98881 0.97808 1.69992 1.30287 1.13108 1.41579 0.85728 0.79410 0.77511 0.79804 1.19338 1.21505 1.19557 1.24204 0.86114 0.96628 0.96784 1.89468 1.35597 1.44568 1.62564 1.23823 0.98285 0.84917 0.95425 1.21613 0.99228 1.00696 0.92867 1.21439 0.92475 0.93474 0.97668 0.83607 0.85965 0.92224 0.87846 0.86977 0.85977 0.82885 0.93479 0.93006 0.92904 0.89792 0.89460 0.90868 0.91447 0.82419 0.78683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.36 10.70 113.37 1.21 -3.15 16 2 S 1.40 18.55 14.19 -56.49 -0.80 17.75 16 3 O -0.93 -27.75 16.90 -148.98 -2.52 -30.27 16 4 C -0.47 -9.18 5.61 22.27 0.12 -9.06 16 5 C -0.08 -2.31 9.44 22.27 0.21 -2.10 16 6 C -0.14 -4.13 9.70 22.27 0.22 -3.91 16 7 C -0.05 -1.27 4.37 -19.87 -0.09 -1.35 16 8 C -0.07 -1.84 5.94 29.10 0.17 -1.67 16 9 C 0.45 16.59 7.95 71.23 0.57 17.15 16 10 O -0.55 -23.65 15.78 21.97 0.35 -23.30 16 11 O -0.34 -14.26 9.82 -51.43 -0.51 -14.77 16 12 C 0.10 4.38 4.67 71.98 0.34 4.72 16 13 C 0.02 0.79 0.62 -52.23 -0.03 0.76 16 14 C -0.50 -26.12 7.92 25.60 0.20 -25.92 16 15 H 0.06 3.18 7.82 -2.91 -0.02 3.16 16 16 C 0.02 1.23 5.25 84.65 0.44 1.67 16 17 N -0.91 -50.68 11.31 21.45 0.24 -50.44 16 18 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.04 1.58 8.35 72.27 0.60 2.19 16 23 O -0.40 -18.56 12.40 -148.98 -1.85 -20.41 16 24 C 0.05 2.47 7.91 72.27 0.57 3.04 16 25 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 26 C -0.03 -0.44 9.75 22.27 0.22 -0.23 16 27 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 3.22 7.45 -2.91 -0.02 3.20 16 31 H 0.11 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.12 2.88 8.09 -2.38 -0.02 2.86 16 33 H 0.15 2.60 8.08 -2.39 -0.02 2.58 16 34 H 0.05 2.50 7.21 -2.39 -0.02 2.48 16 35 H 0.05 2.17 8.04 -2.38 -0.02 2.16 16 36 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 38 H 0.09 3.35 8.09 -2.39 -0.02 3.33 16 39 H 0.07 3.80 7.36 -2.39 -0.02 3.79 16 40 H 0.07 2.85 8.10 -2.39 -0.02 2.83 16 41 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -84.02 374.36 2.95 -81.07 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.03 Total: 15.49 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.98 Total: -19.95 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -4.52 Total: -88.75 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 18.55 SS G_CDS: -0.80 Total: 17.75 kcal Total: -84.02 2.95 -81.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650483561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.743 kcal (2) G-P(sol) polarization free energy of solvation -84.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds