Wall clock time and date at job start Tue Mar 31 2020 21:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42104 * 109.46991 * 2 1 4 4 C 1.76198 * 103.00259 * 109.05637 * 2 1 3 5 5 C 1.38232 * 120.00188 * 89.99675 * 4 2 1 6 6 C 1.38236 * 120.00270 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99783 * 0.02999 * 6 5 4 8 8 C 1.50700 * 119.99837 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47153 * 89.99293 * 8 7 6 10 10 O 1.20824 * 120.00071 * 0.02562 * 9 8 7 11 11 O 1.34234 * 119.99993 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99958 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46746 * 180.02562 * 12 11 9 14 14 C 1.50698 * 113.00113 * 53.51996 * 13 12 11 15 15 H 1.08003 * 120.00264 * 245.39167 * 14 13 12 16 16 C 1.37881 * 120.00083 * 65.39256 * 14 13 12 17 17 N 1.31513 * 119.99930 * 6.61391 * 16 14 13 18 18 Si 1.86801 * 119.99830 * 186.61000 * 16 14 13 19 19 H 1.48498 * 109.46748 * 90.00287 * 18 16 14 20 20 H 1.48504 * 109.47048 * 209.99859 * 18 16 14 21 21 H 1.48496 * 109.47197 * 330.00209 * 18 16 14 22 22 C 1.54034 * 113.81759 * 281.53109 * 13 12 11 23 23 O 1.44181 * 85.51679 * 223.19970 * 22 13 12 24 24 C 1.44175 * 93.34172 * 24.19113 * 23 22 13 25 25 C 1.38232 * 120.00078 * 0.24801 * 7 6 5 26 26 C 1.38235 * 119.99865 * 269.98276 * 4 2 1 27 27 H 1.09003 * 109.46746 * 310.94630 * 1 2 3 28 28 H 1.08997 * 109.46816 * 70.94221 * 1 2 3 29 29 H 1.09000 * 109.47062 * 190.94188 * 1 2 3 30 30 H 1.08006 * 120.00120 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.99801 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46815 * 209.99613 * 8 7 6 33 33 H 1.09001 * 109.47244 * 329.99801 * 8 7 6 34 34 H 1.08997 * 109.46943 * 300.00089 * 12 11 9 35 35 H 1.08995 * 109.47196 * 59.99895 * 12 11 9 36 36 H 0.97003 * 120.00119 * 180.02562 * 17 16 14 37 37 H 1.09005 * 113.86497 * 337.34377 * 22 13 12 38 38 H 1.08994 * 113.86655 * 109.05406 * 22 13 12 39 39 H 1.08999 * 113.86506 * 221.65662 * 24 23 22 40 40 H 1.08999 * 113.97717 * 89.96728 * 24 23 22 41 41 H 1.07994 * 120.00089 * 179.73078 * 25 7 6 42 42 H 1.07996 * 120.00406 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2105 -0.5605 1.6227 5 6 2.3659 -1.9119 1.8685 6 6 2.6774 -2.3517 3.1414 7 6 2.8329 -1.4400 4.1688 8 6 3.1720 -1.9194 5.5567 9 6 4.6694 -1.9750 5.7172 10 8 5.3876 -1.6574 4.7989 11 8 5.2053 -2.3764 6.8806 12 6 6.6547 -2.4047 6.9637 13 6 7.0764 -2.8849 8.3538 14 6 6.4462 -4.1985 8.7392 15 1 5.7487 -4.2418 9.5627 16 6 6.7601 -5.3450 8.0406 17 7 7.7038 -5.3196 7.1251 18 14 5.8448 -6.9345 8.3947 19 1 4.6505 -7.0240 7.5167 20 1 6.7398 -8.0901 8.1323 21 1 5.4164 -6.9528 9.8164 22 6 6.9766 -1.8007 9.4433 23 8 8.2563 -2.2922 9.8903 24 6 8.5965 -2.8295 8.5964 25 6 2.6718 -0.0890 3.9244 26 6 2.3663 0.3512 2.6500 27 1 -0.3633 0.6735 0.7763 28 1 -0.3633 0.3356 -0.9713 29 1 -0.3633 -1.0090 0.1951 30 1 2.2440 -2.6243 1.0659 31 1 2.7993 -3.4075 3.3332 32 1 2.7531 -1.2315 6.2911 33 1 2.7531 -2.9140 5.7101 34 1 7.0486 -3.0857 6.2094 35 1 7.0482 -1.4032 6.7901 36 1 7.9244 -6.1261 6.6333 37 1 7.0063 -0.7822 9.0560 38 1 6.1681 -1.9644 10.1557 39 1 9.0727 -3.8091 8.6370 40 1 9.1210 -2.1268 7.9489 41 1 2.7890 0.6229 4.7279 42 1 2.2455 1.4070 2.4580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650483563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:17 Heat of formation + Delta-G solvation = -107.843347 kcal Electronic energy + Delta-G solvation = -26411.791833 eV Core-core repulsion = 22450.258546 eV Total energy + Delta-G solvation = -3961.533288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15816 -39.35395 -38.77494 -35.96553 -35.73730 -33.13925 -32.91349 -31.10554 -30.06958 -29.17325 -28.09183 -25.45171 -25.25477 -24.22029 -22.93810 -22.26550 -20.16108 -19.03458 -18.33370 -17.10462 -16.88337 -16.47795 -16.14002 -15.77135 -15.38405 -15.18291 -15.07228 -14.88558 -14.41228 -14.39884 -14.21194 -14.01538 -13.92745 -13.57405 -13.02914 -12.95211 -12.74000 -12.34160 -12.25759 -12.00291 -11.85097 -11.74117 -11.62981 -11.21014 -11.04422 -10.80544 -10.50608 -10.45645 -10.19062 -9.97947 -9.63729 -9.44274 -9.19053 -9.09066 -9.06200 -8.79881 -8.60709 -8.33557 -6.21404 -4.24180 0.69336 1.27397 1.63962 2.43681 2.73993 3.21210 3.21837 3.29185 3.32707 3.60184 3.79235 4.29776 4.52792 4.62942 4.82748 4.85060 4.86134 4.93186 5.13871 5.15192 5.22440 5.33726 5.45884 5.48043 5.62548 5.70970 5.88768 5.89012 6.01881 6.09197 6.11843 6.15551 6.27800 6.35159 6.40502 6.52014 6.78716 6.93447 7.09676 7.25206 7.31006 7.34958 7.74775 8.13928 8.41769 8.72893 9.39366 10.87019 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.002491 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.853883 B =11239.957968 C =12069.014787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.859 6.859 4 C -0.464 4.464 5 C -0.043 4.043 6 C -0.120 4.120 7 C -0.029 4.029 8 C -0.084 4.084 9 C 0.453 3.547 10 O -0.516 6.516 11 O -0.329 6.329 12 C 0.084 3.916 13 C 0.033 3.967 14 C -0.486 4.486 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.028 3.972 23 O -0.388 6.388 24 C 0.050 3.950 25 C -0.120 4.120 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.124 0.876 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 4.736 -13.396 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.530 4.470 3 O -0.855 6.855 4 C -0.561 4.561 5 C -0.062 4.062 6 C -0.139 4.139 7 C -0.029 4.029 8 C -0.122 4.122 9 C 0.296 3.704 10 O -0.405 6.405 11 O -0.244 6.244 12 C 0.010 3.990 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.084 0.916 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.049 4.049 23 O -0.307 6.307 24 C -0.027 4.027 25 C -0.139 4.139 26 C -0.072 4.072 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.405 4.978 -14.240 20.180 hybrid contribution -1.187 0.413 1.647 2.072 sum -14.591 5.391 -12.593 20.014 Atomic orbital electron populations 1.27780 1.22789 1.07876 1.07101 1.69458 0.85751 0.99503 0.92328 1.93108 1.73102 1.37260 1.81992 1.27549 1.12876 0.99727 1.15906 1.20772 0.95171 0.93496 0.96792 1.21181 1.00020 0.99883 0.92808 1.19580 0.95252 0.93734 0.94321 1.20379 0.91031 1.05567 0.95201 1.23224 0.91303 0.74278 0.81601 1.90646 1.63097 1.45380 1.41422 1.86531 1.27068 1.76271 1.34559 1.23456 0.74028 0.98635 1.02891 1.21117 0.92683 0.94738 0.88252 1.20552 1.25439 0.90069 1.16244 0.91577 1.24964 0.94699 0.99089 0.94905 1.69891 1.29058 1.29267 1.24368 0.86468 0.79629 0.82410 0.78826 1.20551 1.21187 1.19697 1.24095 0.86879 0.96330 0.97623 1.89495 1.34249 1.76814 1.30122 1.23919 0.98207 0.97997 0.82583 1.21100 1.00392 0.95059 0.97325 1.21015 0.94700 0.99277 0.92184 0.90096 0.87791 0.87089 0.84517 0.85171 0.86909 0.86523 0.89676 0.94519 0.92542 0.92914 0.90374 0.88186 0.93508 0.85778 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.96 10.70 101.05 1.08 -1.88 16 2 S 1.33 10.02 14.19 -107.50 -1.53 8.50 16 3 O -0.86 -12.35 16.90 -35.23 -0.60 -12.94 16 4 C -0.46 -4.89 5.61 -39.58 -0.22 -5.11 16 5 C -0.04 -0.40 9.75 -39.58 -0.39 -0.79 16 6 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 7 C -0.03 -0.38 4.37 -104.63 -0.46 -0.83 16 8 C -0.08 -1.12 5.94 -29.04 -0.17 -1.29 16 9 C 0.45 8.48 7.95 36.00 0.29 8.76 16 10 O -0.52 -11.07 15.78 -18.75 -0.30 -11.37 16 11 O -0.33 -7.00 9.82 -39.27 -0.39 -7.38 16 12 C 0.08 1.91 4.67 37.16 0.17 2.09 16 13 C 0.03 0.78 0.62 -154.58 -0.10 0.68 16 14 C -0.49 -12.58 7.92 -34.44 -0.27 -12.86 16 15 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 16 C 0.07 1.71 5.25 -17.82 -0.09 1.62 16 17 N -0.89 -23.63 11.31 55.43 0.63 -23.01 16 18 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.03 0.59 8.35 37.61 0.31 0.91 16 23 O -0.39 -9.18 12.40 -35.23 -0.44 -9.62 16 24 C 0.05 1.17 7.91 37.61 0.30 1.47 16 25 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 26 C -0.05 -0.68 9.44 -39.58 -0.37 -1.06 16 27 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.12 1.34 8.09 -51.93 -0.42 0.92 16 34 H 0.08 2.17 7.21 -51.93 -0.37 1.80 16 35 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 37 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 38 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 39 H 0.10 2.52 7.36 -51.93 -0.38 2.14 16 40 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.13 1.66 7.45 -52.49 -0.39 1.27 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -36.20 374.35 -8.43 -44.63 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.74 Total: 2.32 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.69 Total: -12.03 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.63 Total: -23.01 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.71 Total: -41.31 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 10.02 SS G_CDS: -1.53 Total: 8.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.20 -8.43 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650483563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.212 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds