Wall clock time and date at job start Tue Mar 31 2020 21:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42104 * 109.46991 * 2 1 4 4 C 1.76198 * 103.00259 * 109.05637 * 2 1 3 5 5 C 1.38232 * 120.00188 * 89.99675 * 4 2 1 6 6 C 1.38236 * 120.00270 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99783 * 0.02999 * 6 5 4 8 8 C 1.50700 * 119.99837 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47153 * 89.99293 * 8 7 6 10 10 O 1.20824 * 120.00071 * 0.02562 * 9 8 7 11 11 O 1.34234 * 119.99993 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99958 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46746 * 180.02562 * 12 11 9 14 14 C 1.50698 * 113.00113 * 53.51996 * 13 12 11 15 15 H 1.08003 * 120.00264 * 245.39167 * 14 13 12 16 16 C 1.37881 * 120.00083 * 65.39256 * 14 13 12 17 17 N 1.31513 * 119.99930 * 6.61391 * 16 14 13 18 18 Si 1.86801 * 119.99830 * 186.61000 * 16 14 13 19 19 H 1.48498 * 109.46748 * 90.00287 * 18 16 14 20 20 H 1.48504 * 109.47048 * 209.99859 * 18 16 14 21 21 H 1.48496 * 109.47197 * 330.00209 * 18 16 14 22 22 C 1.54034 * 113.81759 * 281.53109 * 13 12 11 23 23 O 1.44181 * 85.51679 * 223.19970 * 22 13 12 24 24 C 1.44175 * 93.34172 * 24.19113 * 23 22 13 25 25 C 1.38232 * 120.00078 * 0.24801 * 7 6 5 26 26 C 1.38235 * 119.99865 * 269.98276 * 4 2 1 27 27 H 1.09003 * 109.46746 * 310.94630 * 1 2 3 28 28 H 1.08997 * 109.46816 * 70.94221 * 1 2 3 29 29 H 1.09000 * 109.47062 * 190.94188 * 1 2 3 30 30 H 1.08006 * 120.00120 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.99801 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46815 * 209.99613 * 8 7 6 33 33 H 1.09001 * 109.47244 * 329.99801 * 8 7 6 34 34 H 1.08997 * 109.46943 * 300.00089 * 12 11 9 35 35 H 1.08995 * 109.47196 * 59.99895 * 12 11 9 36 36 H 0.97003 * 120.00119 * 180.02562 * 17 16 14 37 37 H 1.09005 * 113.86497 * 337.34377 * 22 13 12 38 38 H 1.08994 * 113.86655 * 109.05406 * 22 13 12 39 39 H 1.08999 * 113.86506 * 221.65662 * 24 23 22 40 40 H 1.08999 * 113.97717 * 89.96728 * 24 23 22 41 41 H 1.07994 * 120.00089 * 179.73078 * 25 7 6 42 42 H 1.07996 * 120.00406 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2105 -0.5605 1.6227 5 6 2.3659 -1.9119 1.8685 6 6 2.6774 -2.3517 3.1414 7 6 2.8329 -1.4400 4.1688 8 6 3.1720 -1.9194 5.5567 9 6 4.6694 -1.9750 5.7172 10 8 5.3876 -1.6574 4.7989 11 8 5.2053 -2.3764 6.8806 12 6 6.6547 -2.4047 6.9637 13 6 7.0764 -2.8849 8.3538 14 6 6.4462 -4.1985 8.7392 15 1 5.7487 -4.2418 9.5627 16 6 6.7601 -5.3450 8.0406 17 7 7.7038 -5.3196 7.1251 18 14 5.8448 -6.9345 8.3947 19 1 4.6505 -7.0240 7.5167 20 1 6.7398 -8.0901 8.1323 21 1 5.4164 -6.9528 9.8164 22 6 6.9766 -1.8007 9.4433 23 8 8.2563 -2.2922 9.8903 24 6 8.5965 -2.8295 8.5964 25 6 2.6718 -0.0890 3.9244 26 6 2.3663 0.3512 2.6500 27 1 -0.3633 0.6735 0.7763 28 1 -0.3633 0.3356 -0.9713 29 1 -0.3633 -1.0090 0.1951 30 1 2.2440 -2.6243 1.0659 31 1 2.7993 -3.4075 3.3332 32 1 2.7531 -1.2315 6.2911 33 1 2.7531 -2.9140 5.7101 34 1 7.0486 -3.0857 6.2094 35 1 7.0482 -1.4032 6.7901 36 1 7.9244 -6.1261 6.6333 37 1 7.0063 -0.7822 9.0560 38 1 6.1681 -1.9644 10.1557 39 1 9.0727 -3.8091 8.6370 40 1 9.1210 -2.1268 7.9489 41 1 2.7890 0.6229 4.7279 42 1 2.2455 1.4070 2.4580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650483563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:16 Heat of formation + Delta-G solvation = -132.144998 kcal Electronic energy + Delta-G solvation = -26412.845632 eV Core-core repulsion = 22450.258546 eV Total energy + Delta-G solvation = -3962.587086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63757 -40.94419 -39.96931 -37.35932 -36.88587 -34.88550 -34.12458 -31.96964 -31.88287 -29.75974 -29.13775 -27.28618 -27.09406 -25.95733 -23.80947 -23.37319 -21.51440 -20.87976 -19.10050 -18.64979 -18.29517 -17.70152 -17.57196 -17.25973 -16.89200 -16.36463 -16.27786 -16.15806 -16.07681 -15.80229 -15.71673 -15.05339 -14.64038 -14.56595 -14.32357 -14.06236 -13.84546 -13.65735 -13.51348 -13.35619 -13.16049 -13.00269 -12.83438 -12.61326 -12.58348 -12.34718 -12.07614 -11.86226 -11.76643 -11.33377 -11.30003 -11.29068 -10.92249 -10.70084 -10.22543 -10.10529 -9.94151 -9.34133 -8.17246 -6.25924 -0.16166 0.38859 0.95346 1.27215 1.43661 1.45901 1.55176 1.73253 1.95934 2.42767 2.68315 2.99849 3.00865 3.22248 3.51226 3.75668 3.81856 4.01368 4.16929 4.20614 4.25997 4.33730 4.40362 4.43855 4.46978 4.51016 4.52792 4.57450 4.64624 4.74182 4.83029 5.02725 5.12869 5.18479 5.19661 5.23238 5.24592 5.45827 5.49376 5.49714 5.71356 5.73848 5.94532 6.23102 6.72644 6.86972 7.40041 8.89907 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.002491 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.853883 B =11239.957968 C =12069.014787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.397 4.603 3 O -0.930 6.930 4 C -0.470 4.470 5 C -0.034 4.034 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.073 4.073 9 C 0.450 3.550 10 O -0.548 6.548 11 O -0.339 6.339 12 C 0.096 3.904 13 C 0.019 3.981 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.024 3.976 17 N -0.911 5.911 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.270 1.270 22 C 0.036 3.964 23 O -0.403 6.403 24 C 0.052 3.948 25 C -0.135 4.135 26 C -0.081 4.081 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.190 0.810 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 3.642 -14.425 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.595 4.405 3 O -0.926 6.926 4 C -0.565 4.565 5 C -0.053 4.053 6 C -0.152 4.152 7 C -0.050 4.050 8 C -0.110 4.110 9 C 0.295 3.705 10 O -0.439 6.439 11 O -0.254 6.254 12 C 0.021 3.979 13 C 0.018 3.982 14 C -0.538 4.538 15 H 0.078 0.922 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.040 4.040 23 O -0.322 6.322 24 C -0.025 4.025 25 C -0.154 4.154 26 C -0.100 4.100 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.207 0.793 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.631 3.894 -15.249 22.181 hybrid contribution -0.580 0.768 1.885 2.117 sum -16.211 4.662 -13.363 21.520 Atomic orbital electron populations 1.27730 1.20311 1.09576 1.07572 1.68588 0.86148 0.96397 0.89349 1.92983 1.76010 1.40829 1.82765 1.27968 1.11961 1.00168 1.16436 1.21364 0.92762 0.93755 0.97402 1.21570 0.99709 1.00470 0.93440 1.19674 0.96679 0.93956 0.94726 1.20490 0.86680 1.07505 0.96346 1.24294 0.93347 0.72679 0.80214 1.90626 1.64389 1.46742 1.42171 1.86533 1.25878 1.76884 1.36149 1.23094 0.75363 0.98074 1.01339 1.21170 0.92666 0.94979 0.89391 1.20767 1.25537 0.91346 1.16165 0.92232 1.25631 0.95322 1.01823 0.94827 1.70000 1.30005 1.29789 1.25060 0.85601 0.78694 0.78938 0.78748 1.19596 1.21238 1.19476 1.24199 0.86173 0.96907 0.96726 1.89466 1.35298 1.77094 1.30341 1.23834 0.98340 0.97403 0.82887 1.21210 1.01070 0.95505 0.97648 1.21083 0.96500 0.99207 0.93179 0.91975 0.85956 0.83874 0.79293 0.83776 0.84458 0.84365 0.92879 0.93670 0.92706 0.90285 0.89516 0.90579 0.91654 0.85615 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.37 10.70 113.37 1.21 -3.16 16 2 S 1.40 18.56 14.19 -56.49 -0.80 17.76 16 3 O -0.93 -26.87 16.90 -148.98 -2.52 -29.39 16 4 C -0.47 -9.20 5.61 22.27 0.12 -9.08 16 5 C -0.03 -0.54 9.75 22.27 0.22 -0.32 16 6 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 7 C -0.05 -1.27 4.37 -19.87 -0.09 -1.35 16 8 C -0.07 -1.84 5.94 29.10 0.17 -1.66 16 9 C 0.45 16.62 7.95 71.24 0.57 17.19 16 10 O -0.55 -23.70 15.78 21.97 0.35 -23.36 16 11 O -0.34 -14.29 9.82 -51.45 -0.51 -14.80 16 12 C 0.10 4.40 4.67 71.98 0.34 4.74 16 13 C 0.02 0.88 0.62 -52.23 -0.03 0.85 16 14 C -0.50 -25.95 7.92 25.60 0.20 -25.75 16 15 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 16 C 0.02 1.25 5.25 84.66 0.44 1.70 16 17 N -0.91 -49.04 11.31 21.45 0.24 -48.80 16 18 Si 0.95 41.25 29.54 68.60 2.03 43.28 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 C 0.04 1.52 8.35 72.27 0.60 2.12 16 23 O -0.40 -18.84 12.40 -148.98 -1.85 -20.68 16 24 C 0.05 2.47 7.91 72.28 0.57 3.04 16 25 C -0.14 -3.56 9.70 22.27 0.22 -3.35 16 26 C -0.08 -2.11 9.44 22.27 0.21 -1.90 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.14 2.73 8.08 -2.39 -0.02 2.71 16 33 H 0.14 2.86 8.09 -2.39 -0.02 2.84 16 34 H 0.05 2.77 7.21 -2.39 -0.02 2.75 16 35 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 36 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.08 2.87 8.03 -2.38 -0.02 2.85 16 38 H 0.09 3.43 8.09 -2.39 -0.02 3.41 16 39 H 0.08 3.93 7.36 -2.39 -0.02 3.91 16 40 H 0.07 2.80 8.10 -2.39 -0.02 2.78 16 41 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 42 H 0.11 3.11 7.45 -2.91 -0.02 3.09 16 Total: -1.00 -80.80 374.35 2.95 -77.86 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.03 Total: 17.66 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.98 Total: -19.53 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.24 Total: -48.80 kcal Atomic # 8 Polarization: -83.70 SS G_CDS: -4.52 Total: -88.23 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -0.80 Total: 17.76 kcal Total: -80.80 2.95 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650483563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.287 kcal (2) G-P(sol) polarization free energy of solvation -80.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds